Rroxscaffold_5G00374910

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001761
Physical Location & Seq
Forward (+)
55835218 .. 55836462
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374910.1

Sequence Viewer

Length: 1017 bp
ATGGTTCGTCCTCTAATTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCGTCATCCTTCCCTTCGAGGTCAAGGGACAAGGCAAAGGGAACGACTTATATGTCGGGTTTTACGCTTCCGGTTGCCCCAAGGTTGAGGACATTGTTGCTGAGGTTGTGGCCCGTGTTCATGAGCAAGATCCCAAGCTCCCTCCTGCCCTTCTCCGCCTCTTTTTCCATGATTGCTTTGTCAAGGGTTGTGATGCCTCGATCCTGTTGGACGCGACATCATCTGGTGAGCCTATAGAGAAAGCATCAACAGCTAATGGTGAAACACTTAGAGGTCTTGAGGTTGTTGATGAGATCAAGGCCCAGGTAGAGCAGGAGTGCCCCAAAACTGTATCCTGCGCCGACATATTAGCATTTGCTGCTCGGGAAGCCGTTTATCTCGCCGGCCTACCCCGTCATAATGTCCCAGCCGGTCGCCGTGACAGTAGGACTTCACGTGCTTCTGATGTCGATGTCAACCTCCCTACACCTGCAACGCCTGTGGAAGACATTATAAACATGTTCGCCAGAAGAGGCTTGACGAAAGAAGATATGGTTGTCTTGTCCGGTGCACACTCCATTGGCAAAGCACAATGCACCCAATTTACAGACAGACTATACAAGTTTACCCCAGCTGTGCCCAGAGACCCTTCCCTGAACCCAACCTATGCTGATGAGCTAGCAGGAAAGTGCCCAGCAGAGCAGCCTCCGGGGCAAGCATTACGTTTTACGGTGGACTTTGATCCCACAACGCCACTTGTCCTCGACAATCAATACTATCTGAACCTGCAGAAAGGGAGAGGCTTGCTTCAATCGGATCAGCTAATGGCTACTGATCCCGGCACCAGACCAATTGTAGACCAAATGGCTGCTAGCAATGAAGCTTGGGGTAAAAGATTTATCAGGGCCATGATCAAAATGGGAAGAATAAATGTTCTCACCGAAAATGAAGGAGTGATAAGGACAAACTGCCGGGCGTCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

338

Amino Acids

36.93

Weight (kDa)

5.71

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 50 - 301 2.3e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AarI CACCTGC 1 cut(s) 529
AasI GACNNNNNNGTC 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 529, 825
AccB1I GGYRCC 1 cut(s) 872
AccI GTMKAC 1 cut(s) 888
AccII CGCG 1 cut(s) 266
AciI CCGC 2 cut(s) 21, 208
AclWI GGATC 5 cut(s) 176, 247, 767, 855, 860
AcvI CACGTG 1 cut(s) 488
AcyI GRCGYC 1 cut(s) 1007
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 1 cut(s) 842
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 6 cut(s) 190, 305, 665, 709, 853, 914
AluI AGCT 6 cut(s) 190, 305, 665, 709, 853, 914
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 1 cut(s) 669
Alw44I GTGCAC 1 cut(s) 600
AlwI GGATC 5 cut(s) 176, 247, 767, 855, 860
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 4 cut(s) 162, 351, 436, 936
ApaLI GTGCAC 1 cut(s) 600
ApeKI GCWGC 3 cut(s) 410, 733, 899
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 163, 352, 936
AsuC2I CCSGG 3 cut(s) 741, 870, 1004
AsuHPI GGTGA 6 cut(s) 25, 31, 40, 290, 323, 961
AsuNHI GCTAGC 2 cut(s) 709, 902
AvaI CYCGRG 1 cut(s) 414
BaeGI GKGCMC 4 cut(s) 374, 604, 672, 725
BanI GGYRCC 1 cut(s) 872
BbrPI CACGTG 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 604
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 397, 745, 886
BccI CCATC 1 cut(s) 59
BceAI ACGGC 2 cut(s) 407, 453
BciT130I CCWGG 1 cut(s) 356
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 1 cut(s) 942
BcnI CCSGG 3 cut(s) 741, 870, 1004
BcoDI GTCTC 1 cut(s) 669
BfaI CTAG 2 cut(s) 710, 903
BfmI CTRYAG 2 cut(s) 285, 818
BfuAI ACCTGC 2 cut(s) 529, 825
BfuI GTATCC 1 cut(s) 394
BglI GCCNNNNNGGC 1 cut(s) 742
BisI GCNGC 4 cut(s) 21, 411, 734, 900
BlsI GCNGC 4 cut(s) 22, 412, 735, 901
Bme1390I CCNGG 4 cut(s) 356, 741, 870, 1004
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 3 cut(s) 163, 352, 936
BmiI GGNNCC 1 cut(s) 874
BmrFI CCNGG 4 cut(s) 356, 741, 870, 1004
BmsI GCATC 2 cut(s) 235, 305
BmtI GCTAGC 2 cut(s) 713, 906
BpiI GAAGAC 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 3 cut(s) 741, 870, 1004
BsaAI YACGTR 1 cut(s) 488
BsaHI GRCGYC 1 cut(s) 1007
BsaI GGTCTC 1 cut(s) 669
BsaJI CCNNGG 3 cut(s) 132, 354, 740
BsaWI WCCGGW 2 cut(s) 122, 596
Bse118I RCCGGY 2 cut(s) 434, 461
Bse3DI GCAATG 1 cut(s) 913
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 3 cut(s) 132, 354, 740
BseGI GGATG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 1 cut(s) 144
BseSI GKGCMC 4 cut(s) 374, 604, 672, 725
BseXI GCAGC 3 cut(s) 397, 745, 886
BseYI CCCAGC 3 cut(s) 457, 661, 724
Bsh1236I CGCG 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 4 cut(s) 164, 353, 438, 938
BshNI GGYRCC 1 cut(s) 872
BsiEI CGRYCG 1 cut(s) 466
BsiHKAI GWGCWC 1 cut(s) 604
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 7 cut(s) 123, 435, 462, 597, 740, 870, 1003
BslFI GGGAC 2 cut(s) 93, 440
BsmAI GTCTC 1 cut(s) 669
BsmFI GGGAC 2 cut(s) 93, 440
BsnI GGCC 4 cut(s) 164, 353, 438, 938
Bso31I GGTCTC 1 cut(s) 669
BsoBI CYCGRG 1 cut(s) 414
Bsp1286I GDGCHC 4 cut(s) 374, 604, 672, 725
Bsp143I GATC 7 cut(s) 181, 252, 345, 772, 847, 865, 942
BspACI CCGC 2 cut(s) 21, 208
BspANI GGCC 4 cut(s) 164, 353, 438, 938
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 874
BspMAI CTGCAG 1 cut(s) 822
BspMI ACCTGC 2 cut(s) 529, 825
BspOI GCTAGC 2 cut(s) 713, 906
BspPI GGATC 5 cut(s) 176, 247, 767, 855, 860
BspT107I GGYRCC 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 669
BsrDI GCAATG 1 cut(s) 913
BsrFI RCCGGY 2 cut(s) 434, 461
BssAI RCCGGY 2 cut(s) 434, 461
BssECI CCNNGG 3 cut(s) 132, 354, 740
BssMI GATC 7 cut(s) 181, 252, 345, 772, 847, 865, 942
BssNI GRCGYC 1 cut(s) 1007
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 3 cut(s) 382, 476, 763
Bst6I CTCTTC 1 cut(s) 556
BstACI GRCGYC 1 cut(s) 1007
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 488
BstC8I GCNNGC 5 cut(s) 436, 711, 747, 836, 904
BstDEI CTNAG 2 cut(s) 153, 320
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 7 cut(s) 184, 255, 348, 775, 850, 868, 945
BstMAI GTCTC 1 cut(s) 669
BstMBI GATC 7 cut(s) 181, 252, 345, 772, 847, 865, 942
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 4 cut(s) 302, 410, 419, 742
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 4 cut(s) 354, 739, 868, 1002
BstSFI CTRYAG 2 cut(s) 285, 818
BstSLI GKGCMC 4 cut(s) 374, 604, 672, 725
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 3 cut(s) 397, 745, 886
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 4 cut(s) 164, 353, 438, 938
BtsCI GGATG 1 cut(s) 57
BveI ACCTGC 2 cut(s) 529, 825
Cac8I GCNNGC 5 cut(s) 436, 711, 747, 836, 904
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 392
Cfr10I RCCGGY 2 cut(s) 434, 461
Cfr13I GGNCC 3 cut(s) 163, 352, 936
CseI GACGC 2 cut(s) 272, 996
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 4 cut(s) 173, 221, 550, 940
DdeI CTNAG 2 cut(s) 153, 320
DpnI GATC 7 cut(s) 183, 254, 347, 774, 849, 867, 944
DpnII GATC 7 cut(s) 181, 252, 345, 772, 847, 865, 942
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
EciI GGCGGA 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 669
Eco72I CACGTG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 4 cut(s) 176, 224, 553, 943
FaqI GGGAC 2 cut(s) 93, 440
FatI CATG 4 cut(s) 172, 220, 549, 939
FbaI TGATCA 1 cut(s) 942
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 4 cut(s) 21, 411, 734, 900
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 21, 411, 734, 900
FspBI CTAG 2 cut(s) 710, 903
GlaI GCGC 1 cut(s) 391
GluI GCNGC 4 cut(s) 21, 411, 734, 900
GsaI CCCAGC 3 cut(s) 461, 665, 728
HaeIII GGCC 4 cut(s) 164, 353, 438, 938
HapII CCGG 7 cut(s) 123, 435, 462, 597, 740, 870, 1003
HgaI GACGC 2 cut(s) 272, 996
HhaI GCGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 1007
Hin1II CATG 4 cut(s) 176, 224, 553, 943
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 912
HpaII CCGG 7 cut(s) 123, 435, 462, 597, 740, 870, 1003
HphI GGTGA 6 cut(s) 25, 31, 40, 290, 323, 961
Hpy166II GTNNAC 6 cut(s) 48, 508, 602, 657, 766, 889
Hpy188I TCNGA 3 cut(s) 496, 813, 847
Hpy188III TCNNGA 3 cut(s) 173, 329, 416
Hpy8I GTNNAC 6 cut(s) 48, 508, 602, 657, 766, 889
HpyAV CCTTC 6 cut(s) 46, 71, 76, 212, 690, 974
HpyCH4III ACNGT 3 cut(s) 382, 476, 763
HpyCH4IV ACGT 2 cut(s) 487, 754
HpyCH4V TGCA 4 cut(s) 524, 602, 627, 820
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 410, 419, 742
HpyF3I CTNAG 2 cut(s) 153, 320
HpySE526I ACGT 2 cut(s) 487, 754
Hsp92I GRCGYC 1 cut(s) 1007
Hsp92II CATG 4 cut(s) 176, 224, 553, 943
HspAI GCGC 1 cut(s) 390
KroI GCCGGC 1 cut(s) 434
KroNI GCCGGC 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 942
Kzo9I GATC 7 cut(s) 181, 252, 345, 772, 847, 865, 942
LmnI GCTCC 1 cut(s) 195
Lsp1109I GCAGC 3 cut(s) 397, 745, 886
LweI GCATC 2 cut(s) 235, 305
MaeI CTAG 2 cut(s) 710, 903
MaeII ACGT 2 cut(s) 487, 754
MaeIII GTNAC 1 cut(s) 470
MalI GATC 7 cut(s) 183, 254, 347, 774, 849, 867, 944
MboI GATC 7 cut(s) 181, 252, 345, 772, 847, 865, 942
MboII GAAGA 4 cut(s) 548, 573, 590, 966
MfeI CAATTG 1 cut(s) 882
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 4 cut(s) 374, 604, 672, 725
MluCI AATT 3 cut(s) 15, 632, 882
MmeI TCCRAC 1 cut(s) 240
MroNI GCCGGC 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 7 cut(s) 123, 435, 462, 597, 740, 870, 1003
MspR9I CCNGG 4 cut(s) 356, 741, 870, 1004
MunI CAATTG 1 cut(s) 882
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 4 cut(s) 302, 410, 419, 742
NaeI GCCGGC 1 cut(s) 436
NciI CCSGG 3 cut(s) 741, 870, 1004
NdeII GATC 7 cut(s) 181, 252, 345, 772, 847, 865, 942
NgoMIV GCCGGC 1 cut(s) 434
NheI GCTAGC 2 cut(s) 709, 902
NlaIII CATG 4 cut(s) 176, 224, 553, 943
NlaIV GGNNCC 1 cut(s) 874
NmuCI GTSAC 1 cut(s) 470
NspI RCATGY 1 cut(s) 553
PagI TCATGA 1 cut(s) 172
PaqCI CACCTGC 1 cut(s) 529
PciI ACATGT 1 cut(s) 549
PdiI GCCGGC 1 cut(s) 436
PkrI GCNGC 4 cut(s) 22, 412, 735, 901
PmaCI CACGTG 1 cut(s) 488
PmlI CACGTG 1 cut(s) 488
Ppu21I YACGTR 1 cut(s) 488
PscI ACATGT 1 cut(s) 549
PsiI TTATAA 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 354
PspCI CACGTG 1 cut(s) 488
PspFI CCCAGC 3 cut(s) 457, 661, 724
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 874
PspPI GGNCC 3 cut(s) 163, 352, 936
PstI CTGCAG 1 cut(s) 822
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 665
SatI GCNGC 4 cut(s) 21, 411, 734, 900
Sau3AI GATC 7 cut(s) 181, 252, 345, 772, 847, 865, 942
Sau96I GGNCC 3 cut(s) 163, 352, 936
ScrFI CCNGG 4 cut(s) 356, 741, 870, 1004
SduI GDGCHC 4 cut(s) 374, 604, 672, 725
SfaNI GCATC 2 cut(s) 235, 305
SfcI CTRYAG 2 cut(s) 285, 818
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 3 cut(s) 15, 632, 882
SsiI CCGC 2 cut(s) 21, 208
SspMI CTAG 2 cut(s) 710, 903
StyD4I CCNGG 4 cut(s) 354, 739, 868, 1002
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 382, 476, 763
TaiI ACGT 2 cut(s) 490, 757
TaqI TCGA 4 cut(s) 69, 251, 501, 795
TasI AATT 3 cut(s) 15, 632, 882
TauI GCSGC 1 cut(s) 23
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 3 cut(s) 410, 733, 899
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 3 cut(s) 161, 924, 993
VneI GTGCAC 1 cut(s) 600
XceI RCATGY 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 2 cut(s) 710, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.