Rh4CG345500

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001761
Physical Location & Seq
Forward (+)
60466641 .. 60468097
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG345500.1

Sequence Viewer

Length: 1050 bp
ATGAGTCGTTGTCTAATTGCCGCAACCATCCTCGCATTCACCTTGTTCACCATCGTCATCCTTCCCTCCGAGGCCCAGGAACCAGGCGAGGGACCGGTGAAAGTAGACGGAGGGCACGGATTGCATGTCGGGTATTACGCTAAGACTTGCCCGAATGTTGAGGACATTGTAGCTGATGTTGTAAAACGTGTTCAGCAGAATGATCCCAAGCTTCCTCCTGCCCTCATCCGCCTCTTTTTCCATGATTGTTTTGTCAAGGGTTGTGATGCCTCAATCCTGTTGGACACCACAGCATCTAGCGGCAACAGTGTAGAGAAAACATCAACAACCAATGGTGAAACACTCAGAGGTCTTGAGGTCATTGATGAGATCAAGGCCGAGCTCGAGAAGCAATGCCCACAAACTGTATCCTGCGCTGACATATTAGCATATGCTGCTCGGGAAGCCGTTGTACTTGCCGGCCTACCACGTCACAATGTCCCCGCCGGTCGCCATGACAGTAGGACTTCACGTTCTGACGATGCCGATGAAAACCTCCCTACACCAAGAACGCCTCTGAATGACCTAATACACATTTTCGCCAGGAGAAATCTCACAGTAGAAGAAATGGTTGTCTTGTCCGGTGCACACTCCATTGGCGAAGCACAATGTACCCAAGTTACAGACAGACTATACACGTTTAGCCCAGTTGTGCCCAGAGACCCTGCCCTAGACCCAGCCTTTGCTAATGAGCTAGCAGGAAAGTGCCCAGCAGAGCAGCCTCCGGGGCAAGCATTACAATTTAAGGTGGACTTTGATACCACAACACCACTTGTCCTCGACAATAATTACTATTGGAACCTGCAGAAAGGGAGAGGCTTGCTTCAATCGGATCAGGTACTGGCTATTGATCCCGTCACCAGACCATTTGTGGACCAAATGGCTGCTAGCAATGAAGCTTGGACTAAACGATTTTTAAAGGCCATGATCAAGATGGGGAGAATAAATGTTCTCACCAAAACTGAAGGAGAGATAAGGACAAACTGTCGGGCGGTAAATCCTACTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

349

Amino Acids

38.18

Weight (kDa)

5.46

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 57 - 309 2.5e-82 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 849
AccI GTMKAC 1 cut(s) 105
AciI CCGC 5 cut(s) 21, 229, 300, 483, 1031
AclWI GGATC 3 cut(s) 197, 879, 884
AcuI CTGAAG 1 cut(s) 1023
AfaI GTAC 3 cut(s) 453, 652, 879
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 2 cut(s) 187, 675
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 1 cut(s) 866
AhdI GACNNNNNGTC 1 cut(s) 1023
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 3 cut(s) 75, 82, 581
AloI GAACNNNNNNTCC 2 cut(s) 496, 528
AluBI AGCT 5 cut(s) 173, 211, 382, 733, 938
AluI AGCT 5 cut(s) 173, 211, 382, 733, 938
Alw21I GWGCWC 2 cut(s) 384, 628
Alw26I GTCTC 1 cut(s) 693
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 3 cut(s) 197, 879, 884
AlwNI CAGNNNCTG 1 cut(s) 880
Ama87I CYCGRG 2 cut(s) 383, 438
AoxI GGCC 4 cut(s) 72, 375, 460, 960
ApaLI GTGCAC 1 cut(s) 624
ApeKI GCWGC 3 cut(s) 434, 757, 923
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AsiGI ACCGGT 1 cut(s) 94
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 3 cut(s) 73, 92, 913
AsuC2I CCSGG 1 cut(s) 765
AsuHPI GGTGA 6 cut(s) 31, 40, 109, 347, 889, 985
AsuNHI GCTAGC 2 cut(s) 733, 926
AvaI CYCGRG 2 cut(s) 383, 438
AvaII GGWCC 2 cut(s) 92, 913
BaeGI GKGCMC 4 cut(s) 117, 628, 696, 749
BanII GRGCYC 1 cut(s) 384
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
Bbv12I GWGCWC 2 cut(s) 384, 628
BbvI GCAGC 3 cut(s) 421, 769, 910
BccI CCATC 3 cut(s) 35, 59, 967
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 3 cut(s) 77, 84, 583
BciVI GTATCC 1 cut(s) 418
BclI TGATCA 1 cut(s) 966
BcnI CCSGG 1 cut(s) 765
BcoDI GTCTC 1 cut(s) 693
BfaI CTAG 4 cut(s) 297, 710, 734, 927
BfmI CTRYAG 1 cut(s) 842
BfuAI ACCTGC 1 cut(s) 849
BfuI GTATCC 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 766
BisI GCNGC 5 cut(s) 21, 301, 435, 758, 924
BlsI GCNGC 5 cut(s) 22, 302, 436, 759, 925
Bme1390I CCNGG 4 cut(s) 77, 84, 583, 765
Bme18I GGWCC 2 cut(s) 92, 913
BmeRI GACNNNNNGTC 1 cut(s) 1023
BmeT110I CYCGRG 2 cut(s) 383, 438
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 3 cut(s) 73, 92, 913
BmiI GGNNCC 3 cut(s) 81, 93, 839
BmrFI CCNGG 4 cut(s) 77, 84, 583, 765
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 3 cut(s) 256, 302, 511
BmtI GCTAGC 2 cut(s) 737, 930
BmuI ACTGGG 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 765
BsaI GGTCTC 1 cut(s) 693
BsaJI CCNNGG 3 cut(s) 69, 75, 764
BsaWI WCCGGW 2 cut(s) 94, 620
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 3 cut(s) 94, 458, 485
Bse1I ACTGG 2 cut(s) 686, 885
Bse3DI GCAATG 2 cut(s) 398, 937
BseBI CCWGG 3 cut(s) 77, 84, 583
BseDI CCNNGG 3 cut(s) 69, 75, 764
BseGI GGATG 3 cut(s) 27, 57, 225
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 2 cut(s) 398, 937
BseMII CTCAG 1 cut(s) 358
BseNI ACTGG 2 cut(s) 686, 885
BseSI GKGCMC 4 cut(s) 117, 628, 696, 749
BseXI GCAGC 3 cut(s) 421, 769, 910
BseYI CCCAGC 2 cut(s) 715, 748
Bsh1285I CGRYCG 1 cut(s) 490
BshFI GGCC 4 cut(s) 74, 377, 462, 962
BshTI ACCGGT 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 490
BsiHKAI GWGCWC 2 cut(s) 384, 628
BsiHKCI CYCGRG 2 cut(s) 383, 438
BsiSI CCGG 5 cut(s) 95, 459, 486, 621, 764
BslFI GGGAC 2 cut(s) 105, 464
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 693
BsmFI GGGAC 2 cut(s) 105, 464
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 4 cut(s) 74, 377, 462, 962
Bso31I GGTCTC 1 cut(s) 693
BsoBI CYCGRG 2 cut(s) 383, 438
Bsp1286I GDGCHC 5 cut(s) 117, 384, 628, 696, 749
Bsp143I GATC 5 cut(s) 202, 369, 871, 889, 966
BspACI CCGC 5 cut(s) 21, 229, 300, 483, 1031
BspANI GGCC 4 cut(s) 74, 377, 462, 962
BspCNI CTCAG 1 cut(s) 357
BspLI GGNNCC 3 cut(s) 81, 93, 839
BspMAI CTGCAG 1 cut(s) 846
BspMI ACCTGC 1 cut(s) 849
BspOI GCTAGC 2 cut(s) 737, 930
BspPI GGATC 3 cut(s) 197, 879, 884
BspTNI GGTCTC 1 cut(s) 693
BsrDI GCAATG 2 cut(s) 398, 937
BsrFI RCCGGY 3 cut(s) 94, 458, 485
BsrI ACTGG 2 cut(s) 686, 885
BssAI RCCGGY 3 cut(s) 94, 458, 485
BssECI CCNNGG 3 cut(s) 69, 75, 764
BssMI GATC 5 cut(s) 202, 369, 871, 889, 966
Bst2UI CCWGG 3 cut(s) 77, 84, 583
Bst4CI ACNGT 5 cut(s) 308, 406, 500, 598, 1025
BstAPI GCANNNNNTGC 2 cut(s) 121, 434
BstC8I GCNNGC 5 cut(s) 460, 735, 771, 860, 928
BstDEI CTNAG 2 cut(s) 141, 344
BstF5I GGATG 3 cut(s) 27, 57, 225
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 5 cut(s) 205, 372, 874, 892, 969
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 5 cut(s) 202, 369, 871, 889, 966
BstMCI CGRYCG 1 cut(s) 490
BstMWI GCNNNNNNNGC 5 cut(s) 121, 388, 434, 443, 766
BstNI CCWGG 3 cut(s) 77, 84, 583
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 4 cut(s) 75, 82, 581, 763
BstSFI CTRYAG 1 cut(s) 842
BstSLI GKGCMC 4 cut(s) 117, 628, 696, 749
BstV1I GCAGC 3 cut(s) 421, 769, 910
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 4 cut(s) 74, 377, 462, 962
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 3 cut(s) 27, 57, 225
BtsIMutI CAGTG 1 cut(s) 313
BveI ACCTGC 1 cut(s) 849
Cac8I GCNNGC 5 cut(s) 460, 735, 771, 860, 928
CaiI CAGNNNCTG 1 cut(s) 880
CfoI GCGC 1 cut(s) 416
Cfr10I RCCGGY 3 cut(s) 94, 458, 485
Cfr13I GGNCC 3 cut(s) 73, 92, 913
Csp6I GTAC 3 cut(s) 452, 651, 878
CspAI ACCGGT 1 cut(s) 94
CviAII CATG 4 cut(s) 125, 242, 494, 964
CviQI GTAC 3 cut(s) 452, 651, 878
DdeI CTNAG 2 cut(s) 141, 344
DpnI GATC 5 cut(s) 204, 371, 873, 891, 968
DpnII GATC 5 cut(s) 202, 369, 871, 889, 966
DraI TTTAAA 1 cut(s) 957
DriI GACNNNNNGTC 1 cut(s) 1023
Eam1105I GACNNNNNGTC 1 cut(s) 1023
EciI GGCGGA 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 92, 913
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 1023
Eco88I CYCGRG 2 cut(s) 383, 438
EcoICRI GAGCTC 1 cut(s) 382
EcoRII CCWGG 3 cut(s) 75, 82, 581
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 4 cut(s) 128, 245, 497, 967
FaiI YATR 8 cut(s) 126, 243, 422, 430, 432, 495, 673, 965
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FaqI GGGAC 2 cut(s) 105, 464
FatI CATG 4 cut(s) 124, 241, 493, 963
FauI CCCGC 1 cut(s) 490
FauNDI CATATG 1 cut(s) 430
FbaI TGATCA 1 cut(s) 966
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 5 cut(s) 21, 301, 435, 758, 924
FokI GGATG 3 cut(s) 14, 44, 212
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 5 cut(s) 21, 301, 435, 758, 924
FspBI CTAG 4 cut(s) 297, 710, 734, 927
GlaI GCGC 1 cut(s) 415
GluI GCNGC 5 cut(s) 21, 301, 435, 758, 924
GsaI CCCAGC 2 cut(s) 719, 752
HaeIII GGCC 4 cut(s) 74, 377, 462, 962
HapII CCGG 5 cut(s) 95, 459, 486, 621, 764
HhaI GCGC 1 cut(s) 416
Hin1II CATG 4 cut(s) 128, 245, 497, 967
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HindIII AAGCTT 2 cut(s) 209, 936
HinfI GANTC 1 cut(s) 4
HpaII CCGG 5 cut(s) 95, 459, 486, 621, 764
HphI GGTGA 6 cut(s) 31, 40, 109, 347, 889, 985
Hpy166II GTNNAC 5 cut(s) 48, 106, 626, 790, 913
Hpy188I TCNGA 5 cut(s) 70, 347, 517, 558, 871
Hpy188III TCNNGA 4 cut(s) 353, 385, 440, 970
Hpy8I GTNNAC 5 cut(s) 48, 106, 626, 790, 913
HpyAV CCTTC 2 cut(s) 71, 998
HpyCH4III ACNGT 5 cut(s) 308, 406, 500, 598, 1025
HpyCH4IV ACGT 4 cut(s) 187, 469, 511, 677
HpyCH4V TGCA 3 cut(s) 124, 626, 844
HpyF10VI GCNNNNNNNGC 5 cut(s) 121, 388, 434, 443, 766
HpyF3I CTNAG 2 cut(s) 141, 344
HpySE526I ACGT 4 cut(s) 187, 469, 511, 677
Hsp92II CATG 4 cut(s) 128, 245, 497, 967
HspAI GCGC 1 cut(s) 414
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 966
Kzo9I GATC 5 cut(s) 202, 369, 871, 889, 966
Lsp1109I GCAGC 3 cut(s) 421, 769, 910
LweI GCATC 3 cut(s) 256, 302, 511
MaeI CTAG 4 cut(s) 297, 710, 734, 927
MaeII ACGT 4 cut(s) 187, 469, 511, 677
MaeIII GTNAC 3 cut(s) 470, 658, 895
MalI GATC 5 cut(s) 204, 371, 873, 891, 968
MboI GATC 5 cut(s) 202, 369, 871, 889, 966
MboII GAAGA 1 cut(s) 614
MhlI GDGCHC 5 cut(s) 117, 384, 628, 696, 749
MluCI AATT 3 cut(s) 15, 779, 826
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 261
MroNI GCCGGC 1 cut(s) 458
MseI TTAA 2 cut(s) 783, 956
MspI CCGG 5 cut(s) 95, 459, 486, 621, 764
MspR9I CCNGG 4 cut(s) 77, 84, 583, 765
Mva1269I GAATGC 1 cut(s) 35
MvaI CCWGG 3 cut(s) 77, 84, 583
MwoI GCNNNNNNNGC 5 cut(s) 121, 388, 434, 443, 766
NaeI GCCGGC 1 cut(s) 460
NciI CCSGG 1 cut(s) 765
NdeI CATATG 1 cut(s) 430
NdeII GATC 5 cut(s) 202, 369, 871, 889, 966
NgoMIV GCCGGC 1 cut(s) 458
NheI GCTAGC 2 cut(s) 733, 926
NlaIII CATG 4 cut(s) 128, 245, 497, 967
NlaIV GGNNCC 3 cut(s) 81, 93, 839
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 2 cut(s) 470, 895
NspI RCATGY 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 383
PctI GAATGC 1 cut(s) 35
PdiI GCCGGC 1 cut(s) 460
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 5 cut(s) 22, 302, 436, 759, 925
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 3 cut(s) 75, 82, 581
PspFI CCCAGC 2 cut(s) 715, 748
PspGI CCWGG 3 cut(s) 75, 82, 581
PspN4I GGNNCC 3 cut(s) 81, 93, 839
PspPI GGNCC 3 cut(s) 73, 92, 913
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PstI CTGCAG 1 cut(s) 846
PstNI CAGNNNCTG 1 cut(s) 880
RsaI GTAC 3 cut(s) 453, 652, 879
RsaNI GTAC 3 cut(s) 452, 651, 878
SacI GAGCTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 783, 956
SatI GCNGC 5 cut(s) 21, 301, 435, 758, 924
Sau3AI GATC 5 cut(s) 202, 369, 871, 889, 966
Sau96I GGNCC 3 cut(s) 73, 92, 913
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 4 cut(s) 77, 84, 583, 765
SduI GDGCHC 5 cut(s) 117, 384, 628, 696, 749
SfaNI GCATC 3 cut(s) 256, 302, 511
SfcI CTRYAG 1 cut(s) 842
Sfr274I CTCGAG 1 cut(s) 383
SinI GGWCC 2 cut(s) 92, 913
SlaI CTCGAG 1 cut(s) 383
SmlI CTYRAG 2 cut(s) 353, 383
SmoI CTYRAG 2 cut(s) 353, 383
Sse9I AATT 3 cut(s) 15, 779, 826
SsiI CCGC 5 cut(s) 21, 229, 300, 483, 1031
SspMI CTAG 4 cut(s) 297, 710, 734, 927
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 4 cut(s) 75, 82, 581, 763
TaaI ACNGT 5 cut(s) 308, 406, 500, 598, 1025
TaiI ACGT 4 cut(s) 190, 472, 514, 680
TaqI TCGA 2 cut(s) 384, 819
TasI AATT 3 cut(s) 15, 779, 826
TatI WGTACW 1 cut(s) 451
TauI GCSGC 2 cut(s) 23, 303
Tru1I TTAA 2 cut(s) 783, 956
Tru9I TTAA 2 cut(s) 783, 956
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 470, 895
TseI GCWGC 3 cut(s) 434, 757, 923
Tsp45I GTSAC 2 cut(s) 470, 895
TspDTI ATGAA 2 cut(s) 543, 948
TspGWI ACGGA 2 cut(s) 123, 132
TspRI CASTG 1 cut(s) 313
VneI GTGCAC 1 cut(s) 624
VpaK11BI GGWCC 2 cut(s) 92, 913
XceI RCATGY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 2 cut(s) 907, 970
XhoI CTCGAG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 4 cut(s) 297, 710, 734, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.