FvH4_4g25140

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001761
Physical Location & Seq
Reverse (-)
27018619 .. 27019995
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25140.t1

Sequence Viewer

Length: 1050 bp
ATGGAGATCTGTCATCGTCCAATTGCCGCAATTATCCTCATCTTCACCTTGTTCGCCAATATCATCCTTCCTTCCGAGGCCAGAGGACAAGGCCTAGGGAATGATTTACATGTTGGGTTTTATTCTAAAACTTGCCCCCAGGTTGAGGACATTGTCTCAGATGTTGTAAAACGTTTTCAGGCGCAAGATCCCAAGCTTCCTCCTGCACTCCTCCGCCTGTTTTTCCATGATTGTTTTGTCAAGGGTTGTGATGCTTCCATCTTGTTGGATGCCACACCATCTGGTCAGCCTGTAGAGAAATTATCTGAAGCCAATGGCAAAACACTGCGAGGTCTTGAGGTTATTGATGAGATCAAGGCCGAGCTCGAGAAGAGTTGCCCACGAACTGTATCCTGCGCTGACATAATAGCGTATGCGGCTAGGGAAGCCGTTGCACTTGCCGGCCTACCGCGTCACGATGTCCCCGCCGGTCGCCGTGACAGTACCACTTCACGTGCTACAGATGCCGATGTCAGCCTCCCTACACCTACAATGCCTCTGCAACAAATAATAGGAATATTCAACCAGAGAAATTTCTCACTAGAAGATATTGTTGTCATGTCTGGTGCACACTCTATTGGCGAGTCACAATGTAACCAAGTTAACCGTAGAATATACACGTTTGCCCCAAATGTGCCCAGAGACCCTGCCCTAGATCCAGCCTATGCTGATGAGCTAGCCCAAAAGTGCCCAGCACAGGTGCCTCCGGACCAAGAGTTAAATTTTAAGGTGAACCTTGATCCTGTAACACCAGAAGTGCTCGACAATCAGTACTATTTGAACCTGCAGCAAAAGAAAGGCTTGTTTCGATCGGATCAGGCACTGGCTACTGATCCCGGCACCCAAGAAATTGTGAACCAAATGGCTGCTAGCAATGAAGCTTGGACTAAAAGGTTTATCAAGAACATGATCAAGATGGGGAGATCACAAGTTCTCACCAGGGATGAGGGAGAGATAAGGTTAAACTGTCGGGAGTTTAACAAAGAGCCGGACAGGATCGACAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

350

Amino Acids

38.67

Weight (kDa)

5.31

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 303 1e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 831
AccB1I GGYRCC 2 cut(s) 739, 878
AccII CGCG 1 cut(s) 451
AccIII TCCGGA 1 cut(s) 745
AciI CCGC 5 cut(s) 27, 214, 416, 449, 465
AclI AACGTT 1 cut(s) 172
AclWI GGATC 6 cut(s) 182, 689, 773, 861, 866, 1043
AcsI RAATTY 2 cut(s) 571, 760
AcuI CTGAAG 1 cut(s) 327
AcvI CACGTG 1 cut(s) 494
AfaI GTAC 2 cut(s) 484, 812
AfiI CCNNNNNNNGG 2 cut(s) 145, 736
AflIII ACRYGT 2 cut(s) 109, 657
AgsI TTSAA 2 cut(s) 562, 820
AjnI CCWGG 2 cut(s) 138, 977
AluBI AGCT 4 cut(s) 196, 364, 715, 920
AluI AGCT 4 cut(s) 196, 364, 715, 920
Alw21I GWGCWC 3 cut(s) 366, 610, 801
Alw26I GTCTC 2 cut(s) 160, 675
Alw44I GTGCAC 1 cut(s) 606
AlwI GGATC 6 cut(s) 182, 689, 773, 861, 866, 1043
AlwNI CAGNNNCTG 1 cut(s) 862
Ama87I CYCGRG 1 cut(s) 365
Aor13HI TCCGGA 1 cut(s) 745
AoxI GGCC 4 cut(s) 78, 91, 357, 442
ApaLI GTGCAC 1 cut(s) 606
ApeKI GCWGC 2 cut(s) 826, 905
ApoI RAATTY 2 cut(s) 571, 760
AspA2I CCTAGG 1 cut(s) 94
AspLEI GCGC 2 cut(s) 184, 398
AspS9I GGNCC 1 cut(s) 748
AsuC2I CCSGG 1 cut(s) 876
AsuHPI GGTGA 3 cut(s) 37, 781, 967
AsuNHI GCTAGC 2 cut(s) 715, 908
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 748
AvrII CCTAGG 1 cut(s) 94
BaeGI GKGCMC 3 cut(s) 610, 678, 731
BanI GGYRCC 2 cut(s) 739, 878
BanII GRGCYC 1 cut(s) 366
BbrPI CACGTG 1 cut(s) 494
Bbv12I GWGCWC 3 cut(s) 366, 610, 801
BbvI GCAGC 2 cut(s) 838, 892
BccI CCATC 3 cut(s) 266, 286, 949
BceAI ACGGC 2 cut(s) 413, 459
BciT130I CCWGG 2 cut(s) 140, 979
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 1 cut(s) 948
BcnI CCSGG 1 cut(s) 876
BcoDI GTCTC 2 cut(s) 160, 675
BfaI CTAG 6 cut(s) 95, 420, 581, 692, 716, 909
BfmI CTRYAG 3 cut(s) 291, 498, 824
BfuAI ACCTGC 1 cut(s) 831
BfuI GTATCC 1 cut(s) 400
BglII AGATCT 1 cut(s) 6
BisI GCNGC 4 cut(s) 27, 417, 827, 906
BlnI CCTAGG 1 cut(s) 94
BlsI GCNGC 4 cut(s) 28, 418, 828, 907
BmcAI AGTACT 1 cut(s) 812
Bme1390I CCNGG 3 cut(s) 140, 876, 979
Bme18I GGWCC 1 cut(s) 748
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 748
BmiI GGNNCC 2 cut(s) 741, 880
BmrFI CCNGG 3 cut(s) 140, 876, 979
BmsI GCATC 3 cut(s) 241, 259, 493
BmtI GCTAGC 2 cut(s) 719, 912
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 876
BsaAI YACGTR 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 675
BsaJI CCNNGG 4 cut(s) 75, 94, 138, 978
BsaWI WCCGGW 1 cut(s) 745
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 736
Bse118I RCCGGY 2 cut(s) 440, 467
Bse1I ACTGG 1 cut(s) 867
Bse3DI GCAATG 1 cut(s) 919
BseAI TCCGGA 1 cut(s) 745
BseBI CCWGG 2 cut(s) 140, 979
BseDI CCNNGG 4 cut(s) 75, 94, 138, 978
BseGI GGATG 3 cut(s) 63, 274, 988
BseLI CCNNNNNNNGG 2 cut(s) 145, 736
BseMI GCAATG 1 cut(s) 919
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 867
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 3 cut(s) 610, 678, 731
BseXI GCAGC 2 cut(s) 838, 892
BseYI CCCAGC 1 cut(s) 730
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 451
Bsh1285I CGRYCG 2 cut(s) 472, 851
BshFI GGCC 4 cut(s) 80, 93, 359, 444
BshNI GGYRCC 2 cut(s) 739, 878
BsiEI CGRYCG 2 cut(s) 472, 851
BsiHKAI GWGCWC 3 cut(s) 366, 610, 801
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 5 cut(s) 441, 468, 746, 876, 1028
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 2 cut(s) 145, 736
BsmAI GTCTC 2 cut(s) 160, 675
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 4 cut(s) 80, 93, 359, 444
Bso31I GGTCTC 1 cut(s) 675
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 5 cut(s) 366, 610, 678, 731, 801
Bsp13I TCCGGA 1 cut(s) 745
BspACI CCGC 5 cut(s) 27, 214, 416, 449, 465
BspANI GGCC 4 cut(s) 80, 93, 359, 444
BspCNI CTCAG 1 cut(s) 170
BspEI TCCGGA 1 cut(s) 745
BspFNI CGCG 1 cut(s) 451
BspLI GGNNCC 2 cut(s) 741, 880
BspMAI CTGCAG 1 cut(s) 828
BspMI ACCTGC 1 cut(s) 831
BspOI GCTAGC 2 cut(s) 719, 912
BspPI GGATC 6 cut(s) 182, 689, 773, 861, 866, 1043
BspT107I GGYRCC 2 cut(s) 739, 878
BspTNI GGTCTC 1 cut(s) 675
BsrDI GCAATG 1 cut(s) 919
BsrFI RCCGGY 2 cut(s) 440, 467
BsrI ACTGG 1 cut(s) 867
BssAI RCCGGY 2 cut(s) 440, 467
BssECI CCNNGG 4 cut(s) 75, 94, 138, 978
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 2 cut(s) 140, 979
Bst4CI ACNGT 4 cut(s) 388, 482, 647, 1007
Bst6I CTCTTC 1 cut(s) 365
BstBAI YACGTR 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 442, 717, 910
BstDEI CTNAG 1 cut(s) 157
BstF5I GGATG 3 cut(s) 63, 274, 988
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 2 cut(s) 184, 398
BstMAI GTCTC 2 cut(s) 160, 675
BstMCI CGRYCG 2 cut(s) 472, 851
BstMWI GCNNNNNNNGC 3 cut(s) 416, 425, 503
BstNI CCWGG 2 cut(s) 140, 979
BstNSI RCATGY 1 cut(s) 113
BstSCI CCNGG 3 cut(s) 138, 874, 977
BstSFI CTRYAG 3 cut(s) 291, 498, 824
BstSLI GKGCMC 3 cut(s) 610, 678, 731
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 2 cut(s) 838, 892
BstX2I RGATCY 3 cut(s) 6, 187, 694
BstXI CCANNNNNNTGG 1 cut(s) 265
BstYI RGATCY 3 cut(s) 6, 187, 694
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 4 cut(s) 80, 93, 359, 444
BtsCI GGATG 3 cut(s) 63, 274, 988
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 2 cut(s) 323, 860
BveI ACCTGC 1 cut(s) 831
Cac8I GCNNGC 3 cut(s) 442, 717, 910
CaiI CAGNNNCTG 1 cut(s) 862
CfoI GCGC 2 cut(s) 184, 398
Cfr10I RCCGGY 2 cut(s) 440, 467
Cfr13I GGNCC 1 cut(s) 748
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 483, 811
CviAII CATG 4 cut(s) 110, 227, 598, 946
CviQI GTAC 2 cut(s) 483, 811
DdeI CTNAG 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
EciI GGCGGA 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 675
Eco47I GGWCC 1 cut(s) 748
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 327
Eco72I CACGTG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 364
EcoRII CCWGG 2 cut(s) 138, 977
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 113, 230, 601, 949
FaiI YATR 8 cut(s) 111, 228, 404, 414, 599, 655, 705, 947
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 1 cut(s) 446
FatI CATG 4 cut(s) 109, 226, 597, 945
FauI CCCGC 1 cut(s) 472
FbaI TGATCA 1 cut(s) 948
Fnu4HI GCNGC 4 cut(s) 27, 417, 827, 906
FokI GGATG 3 cut(s) 50, 281, 995
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 4 cut(s) 27, 417, 827, 906
FspBI CTAG 6 cut(s) 95, 420, 581, 692, 716, 909
GlaI GCGC 2 cut(s) 183, 397
GluI GCNGC 4 cut(s) 27, 417, 827, 906
GsaI CCCAGC 1 cut(s) 734
HaeIII GGCC 4 cut(s) 80, 93, 359, 444
HapII CCGG 5 cut(s) 441, 468, 746, 876, 1028
HgaI GACGC 1 cut(s) 440
HhaI GCGC 2 cut(s) 184, 398
Hin1II CATG 4 cut(s) 113, 230, 601, 949
Hin6I GCGC 2 cut(s) 182, 396
HinP1I GCGC 2 cut(s) 182, 396
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 2 cut(s) 194, 918
HinfI GANTC 1 cut(s) 623
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 5 cut(s) 441, 468, 746, 876, 1028
HphI GGTGA 3 cut(s) 37, 781, 967
Hpy166II GTNNAC 4 cut(s) 608, 643, 772, 895
Hpy188I TCNGA 4 cut(s) 76, 160, 307, 853
Hpy188III TCNNGA 7 cut(s) 335, 367, 455, 746, 940, 952, 1010
Hpy8I GTNNAC 4 cut(s) 608, 643, 772, 895
HpyAV CCTTC 2 cut(s) 77, 81
HpyCH4III ACNGT 4 cut(s) 388, 482, 647, 1007
HpyCH4IV ACGT 3 cut(s) 172, 493, 659
HpyCH4V TGCA 5 cut(s) 206, 434, 541, 608, 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 425, 503
HpyF3I CTNAG 1 cut(s) 157
HpySE526I ACGT 3 cut(s) 172, 493, 659
Hsp92II CATG 4 cut(s) 113, 230, 601, 949
HspAI GCGC 2 cut(s) 182, 396
Kpn2I TCCGGA 1 cut(s) 745
KroI GCCGGC 1 cut(s) 440
KroNI GCCGGC 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 948
KspAI GTTAAC 1 cut(s) 643
Lsp1109I GCAGC 2 cut(s) 838, 892
LweI GCATC 3 cut(s) 241, 259, 493
MaeI CTAG 6 cut(s) 95, 420, 581, 692, 716, 909
MaeII ACGT 3 cut(s) 172, 493, 659
MaeIII GTNAC 5 cut(s) 452, 476, 624, 632, 784
MboII GAAGA 3 cut(s) 34, 382, 596
MfeI CAATTG 1 cut(s) 21
MflI RGATCY 3 cut(s) 6, 187, 694
MhlI GDGCHC 5 cut(s) 366, 610, 678, 731, 801
MluCI AATT 6 cut(s) 21, 30, 299, 571, 760, 888
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 1 cut(s) 246
MroI TCCGGA 1 cut(s) 745
MroNI GCCGGC 1 cut(s) 440
MseI TTAA 6 cut(s) 642, 758, 765, 1001, 1017, 1048
MspI CCGG 5 cut(s) 441, 468, 746, 876, 1028
MspR9I CCNGG 3 cut(s) 140, 876, 979
MunI CAATTG 1 cut(s) 21
MvaI CCWGG 2 cut(s) 140, 979
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 3 cut(s) 416, 425, 503
NaeI GCCGGC 1 cut(s) 442
NciI CCSGG 1 cut(s) 876
NgoMIV GCCGGC 1 cut(s) 440
NheI GCTAGC 2 cut(s) 715, 908
NlaIII CATG 4 cut(s) 113, 230, 601, 949
NlaIV GGNNCC 2 cut(s) 741, 880
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 3 cut(s) 452, 476, 624
NspI RCATGY 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 365
PceI AGGCCT 1 cut(s) 93
PciI ACATGT 1 cut(s) 109
PdiI GCCGGC 1 cut(s) 442
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 4 cut(s) 28, 418, 828, 907
Ple19I CGATCG 1 cut(s) 851
PleI GAGTC 1 cut(s) 631
PmaCI CACGTG 1 cut(s) 494
PmlI CACGTG 1 cut(s) 494
PpsI GAGTC 1 cut(s) 631
Ppu21I YACGTR 1 cut(s) 494
PscI ACATGT 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 366
Psp1406I AACGTT 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 138, 977
PspCI CACGTG 1 cut(s) 494
PspFI CCCAGC 1 cut(s) 730
PspGI CCWGG 2 cut(s) 138, 977
PspN4I GGNNCC 2 cut(s) 741, 880
PspPI GGNCC 1 cut(s) 748
PstI CTGCAG 1 cut(s) 828
PstNI CAGNNNCTG 1 cut(s) 862
PsuI RGATCY 3 cut(s) 6, 187, 694
PsyI GACNNNGTC 1 cut(s) 152
PvuI CGATCG 1 cut(s) 851
RsaI GTAC 2 cut(s) 484, 812
RsaNI GTAC 2 cut(s) 483, 811
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 6 cut(s) 642, 758, 765, 1001, 1017, 1048
SatI GCNGC 4 cut(s) 27, 417, 827, 906
Sau96I GGNCC 1 cut(s) 748
ScaI AGTACT 1 cut(s) 812
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 3 cut(s) 140, 876, 979
SduI GDGCHC 5 cut(s) 366, 610, 678, 731, 801
SfaNI GCATC 3 cut(s) 241, 259, 493
SfcI CTRYAG 3 cut(s) 291, 498, 824
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 1 cut(s) 748
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 335, 365
SmoI CTYRAG 2 cut(s) 335, 365
Sse9I AATT 6 cut(s) 21, 30, 299, 571, 760, 888
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 5 cut(s) 27, 214, 416, 449, 465
SspI AATATT 1 cut(s) 558
SspMI CTAG 6 cut(s) 95, 420, 581, 692, 716, 909
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 1 cut(s) 93
StyD4I CCNGG 3 cut(s) 138, 874, 977
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 4 cut(s) 388, 482, 647, 1007
TaiI ACGT 3 cut(s) 175, 496, 662
TaqI TCGA 4 cut(s) 366, 801, 847, 1038
TasI AATT 6 cut(s) 21, 30, 299, 571, 760, 888
TatI WGTACW 1 cut(s) 810
TauI GCSGC 2 cut(s) 29, 419
Tru1I TTAA 6 cut(s) 642, 758, 765, 1001, 1017, 1048
Tru9I TTAA 6 cut(s) 642, 758, 765, 1001, 1017, 1048
TscAI CASTG 2 cut(s) 330, 867
TseFI GTSAC 3 cut(s) 452, 476, 624
TseI GCWGC 2 cut(s) 826, 905
Tsp45I GTSAC 3 cut(s) 452, 476, 624
TspDTI ATGAA 1 cut(s) 930
TspRI CASTG 2 cut(s) 330, 867
Tth111I GACNNNGTC 1 cut(s) 152
VneI GTGCAC 1 cut(s) 606
VpaK11BI GGWCC 1 cut(s) 748
XapI RAATTY 2 cut(s) 571, 760
XceI RCATGY 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 365
XmaJI CCTAGG 1 cut(s) 94
XspI CTAG 6 cut(s) 95, 420, 581, 692, 716, 909
ZrmI AGTACT 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.