Rh7AG394400

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001761
Physical Location & Seq
Reverse (-)
51664918 .. 51666084
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG394400.1

Sequence Viewer

Length: 612 bp
ATGGGTGGTCGTCTAATTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCATCATCCTTCCCTCCGAGGCCAAGGGAGAAGGCAAAGGGAACGGCTTACATGTTGGGTTTTACGCTTCGAGTTGCCCCAAGGTTGAGGACATTGTTACTGAGGTTGTGGGCCGTGTGCATGAGCGAGATCCAAGCTCCCTCCTGCCCTCCTCCGCCTCTTTTTCCATGACTGTTTTGTCAAGACATGTTCGGCAGGAGAAATCCCACACTAGAAGATATGGTTGTCTTGTTCGGTGCACACTCCATTGGCGAAGCACAATGCACCCAATTGAACACAGACTATACAAATATAGCAAAGCTCAGCCCCGAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAGGCGGAAAGTGCTCAGCACTAGACACATTGCCTGCAGAGCAAGCATTACGTATAATGGTGGGCTTTGATCCAACAACACCACTTGACCTTGACAATCAGTACTATGTGAACCTGATGAGAGGGAGAGGCTTGCTTCAATCAGATCAAGTACTGACTACTGATCCCCAAACAGGAGCAATTATGTTCAGAATGGTTGATTGCTCTGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

203

Amino Acids

22.57

Weight (kDa)

7.04

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 106 - 196 1.8e-15 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 229
AciI CCGC 3 cut(s) 21, 207, 402
AclWI GGATC 3 cut(s) 176, 461, 554
AfaI GTAC 2 cut(s) 500, 549
AfiI CCNNNNNNNGG 2 cut(s) 373, 569
AflIII ACRYGT 2 cut(s) 103, 238
AgsI TTSAA 2 cut(s) 326, 536
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 3 cut(s) 189, 353, 397
AluI AGCT 3 cut(s) 189, 353, 397
Alw21I GWGCWC 2 cut(s) 293, 413
Alw26I GTCTC 2 cut(s) 357, 599
Alw44I GTGCAC 1 cut(s) 289
AlwI GGATC 3 cut(s) 176, 461, 554
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 2 cut(s) 72, 163
ApaLI GTGCAC 1 cut(s) 289
AspS9I GGNCC 2 cut(s) 163, 376
AsuHPI GGTGA 3 cut(s) 25, 31, 40
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 293
Bbv12I GWGCWC 2 cut(s) 293, 413
BccI CCATC 1 cut(s) 59
BceAI ACGGC 2 cut(s) 112, 150
BciT130I CCWGG 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 357, 599
BfaI CTAG 3 cut(s) 264, 398, 419
BfmI CTRYAG 1 cut(s) 432
BisI GCNGC 1 cut(s) 21
BlpI GCTNAGC 2 cut(s) 354, 412
BlsI GCNGC 1 cut(s) 22
BmcAI AGTACT 2 cut(s) 500, 549
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 376
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 2 cut(s) 163, 376
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 374
Bpu1102I GCTNAGC 2 cut(s) 354, 412
BsaAI YACGTR 1 cut(s) 449
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 4 cut(s) 69, 75, 132, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 569
Bse3DI GCAATG 1 cut(s) 425
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 4 cut(s) 69, 75, 132, 372
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 373, 569
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 4 cut(s) 144, 368, 426, 594
BseRI GAGGAG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 293
BshFI GGCC 2 cut(s) 74, 165
BsiHKAI GWGCWC 2 cut(s) 293, 413
BsiHKCI CYCGRG 1 cut(s) 360
BslI CCNNNNNNNGG 2 cut(s) 373, 569
BsmAI GTCTC 2 cut(s) 357, 599
BsnI GGCC 2 cut(s) 74, 165
Bso31I GGTCTC 1 cut(s) 357
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 293, 413
Bsp143I GATC 4 cut(s) 181, 466, 541, 559
Bsp1720I GCTNAGC 2 cut(s) 354, 412
BspACI CCGC 3 cut(s) 21, 207, 402
BspANI GGCC 2 cut(s) 74, 165
BspCNI CTCAG 4 cut(s) 145, 367, 425, 595
BspLI GGNNCC 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 436
BspPI GGATC 3 cut(s) 176, 461, 554
BspTNI GGTCTC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 425
BssECI CCNNGG 4 cut(s) 69, 75, 132, 372
BssMI GATC 4 cut(s) 181, 466, 541, 559
BssT1I CCWWGG 2 cut(s) 75, 132
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 226
BstBAI YACGTR 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 432, 441, 530
BstDEI CTNAG 4 cut(s) 153, 354, 412, 603
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 4 cut(s) 184, 469, 544, 562
BstMAI GTCTC 2 cut(s) 357, 599
BstMBI GATC 4 cut(s) 181, 466, 541, 559
BstMWI GCNNNNNNNGC 3 cut(s) 408, 436, 440
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 2 cut(s) 107, 242
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 293
BstSNI TACGTA 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 2 cut(s) 74, 165
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 3 cut(s) 432, 441, 530
Cfr13I GGNCC 2 cut(s) 163, 376
Csp6I GTAC 2 cut(s) 499, 548
CviAII CATG 4 cut(s) 104, 173, 220, 239
CviJI RGCY 9 cut(s) 74, 99, 165, 189, 353, 358, 397, 462, 528
CviKI_1 RGCY 9 cut(s) 74, 99, 165, 189, 353, 358, 397, 462, 528
CviQI GTAC 2 cut(s) 499, 548
DdeI CTNAG 4 cut(s) 153, 354, 412, 603
DpnI GATC 4 cut(s) 183, 468, 543, 561
DpnII GATC 4 cut(s) 181, 466, 541, 559
DrdI GACNNNNNNGTC 1 cut(s) 229
DseDI GACNNNNNNGTC 1 cut(s) 229
EciI GGCGGA 2 cut(s) 196, 417
Eco105I TACGTA 1 cut(s) 449
Eco130I CCWWGG 2 cut(s) 75, 132
Eco31I GGTCTC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 75, 132
ErhI CCWWGG 2 cut(s) 75, 132
FaeI CATG 4 cut(s) 107, 176, 223, 242
FatI CATG 4 cut(s) 103, 172, 219, 238
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 3 cut(s) 264, 398, 419
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 74, 165
Hin1II CATG 4 cut(s) 107, 176, 223, 242
HphI GGTGA 3 cut(s) 25, 31, 40
Hpy166II GTNNAC 3 cut(s) 48, 291, 508
Hpy188I TCNGA 4 cut(s) 70, 541, 587, 604
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 3 cut(s) 48, 291, 508
HpyAV CCTTC 4 cut(s) 46, 71, 77, 378
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 4 cut(s) 172, 291, 316, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 408, 436, 440
HpyF3I CTNAG 4 cut(s) 153, 354, 412, 603
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 4 cut(s) 107, 176, 223, 242
Kzo9I GATC 4 cut(s) 181, 466, 541, 559
LmnI GCTCC 2 cut(s) 194, 572
LpnPI CCDG 7 cut(s) 209, 233, 359, 386, 444, 524, 555
MaeI CTAG 3 cut(s) 264, 398, 419
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 1 cut(s) 148
MalI GATC 4 cut(s) 183, 468, 543, 561
MboI GATC 4 cut(s) 181, 466, 541, 559
MboII GAAGA 1 cut(s) 279
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 293, 413
MluCI AATT 3 cut(s) 15, 321, 576
MmeI TCCRAC 1 cut(s) 494
MspR9I CCNGG 1 cut(s) 374
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 3 cut(s) 408, 436, 440
NdeII GATC 4 cut(s) 181, 466, 541, 559
NlaIII CATG 4 cut(s) 107, 176, 223, 242
NlaIV GGNNCC 1 cut(s) 378
NspI RCATGY 2 cut(s) 107, 242
PciI ACATGT 2 cut(s) 103, 238
PkrI GCNGC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 449
PscI ACATGT 2 cut(s) 103, 238
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 163, 376
PstI CTGCAG 1 cut(s) 436
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 500, 549
RsaNI GTAC 2 cut(s) 499, 548
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 4 cut(s) 181, 466, 541, 559
Sau96I GGNCC 2 cut(s) 163, 376
ScaI AGTACT 2 cut(s) 500, 549
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 2 cut(s) 293, 413
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 1 cut(s) 376
SnaBI TACGTA 1 cut(s) 449
Sse9I AATT 3 cut(s) 15, 321, 576
SsiI CCGC 3 cut(s) 21, 207, 402
SspMI CTAG 3 cut(s) 264, 398, 419
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 2 cut(s) 75, 132
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 451
TaqI TCGA 1 cut(s) 122
TasI AATT 3 cut(s) 15, 321, 576
TatI WGTACW 2 cut(s) 498, 547
TauI GCSGC 1 cut(s) 23
VneI GTGCAC 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 376
XceI RCATGY 2 cut(s) 107, 242
XspI CTAG 3 cut(s) 264, 398, 419
ZrmI AGTACT 2 cut(s) 500, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.