Rw4G027930

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001761
Physical Location & Seq
Forward (+)
54661935 .. 54662402
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027930.1

Sequence Viewer

Length: 468 bp
ATGTTCGCCAGAAGAGGCTTGACGAAAGAAGATATGGTTGTCTTGTCCGGTGCACACTCCATTGGCAAAGCACAATGCACCCAATTTACAGACAGACTATACAAGTTTACCCCAGCTGTGCCCAGAGACCCTTCCCTGAACCCAACCTATGCTGATGAGCTAGCAGGAAAGTGCCCAGCAGAGCAGCCTCCGGGGCAAGCATTACGTTTTACGGTGGAATTTGATCCCACAACACCACTTGTCCTCGACAATCAGTACTATCTGAACCTGCAGAAAGGGAGAGGCTTGCTTCAATCGGATCAGCTAATGGCCACTGATCCCGGCACTAGACCAATTGTGGACCAAATGGCTGCTAGCAATGAAGCTTGGGGTAGAAGATTTATCAAGGCCATGATCAAGATGGGAAGAATAAATGTTCTCACCAAAGATGAAGGAGTGATAAGGACAAACTGCCGGGCGTATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

155

Amino Acids

17.31

Weight (kDa)

9.07

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 1 - 119 8.6e-35 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AclWI GGATC 3 cut(s) 218, 306, 311
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 218
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 4 cut(s) 116, 160, 304, 365
AluI AGCT 4 cut(s) 116, 160, 304, 365
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 51
AlwI GGATC 3 cut(s) 218, 306, 311
AoxI GGCC 2 cut(s) 309, 387
ApaLI GTGCAC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 184, 350
ApoI RAATTY 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 3 cut(s) 192, 321, 455
AsuHPI GGTGA 1 cut(s) 412
AsuNHI GCTAGC 2 cut(s) 160, 353
AvaII GGWCC 1 cut(s) 340
BaeGI GKGCMC 3 cut(s) 55, 123, 176
BalI TGGCCA 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 196, 337
BccI CCATC 1 cut(s) 394
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 3 cut(s) 192, 321, 455
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 3 cut(s) 161, 327, 354
BfmI CTRYAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 276
BglI GCCNNNNNGGC 1 cut(s) 193
BisI GCNGC 2 cut(s) 185, 351
BlsI GCNGC 2 cut(s) 186, 352
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 3 cut(s) 192, 321, 455
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmrFI CCNGG 3 cut(s) 192, 321, 455
BmtI GCTAGC 2 cut(s) 164, 357
BpuMI CCSGG 3 cut(s) 192, 321, 455
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 364
BseSI GKGCMC 3 cut(s) 55, 123, 176
BseXI GCAGC 2 cut(s) 196, 337
BseYI CCCAGC 2 cut(s) 112, 175
BshFI GGCC 2 cut(s) 311, 389
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 4 cut(s) 48, 191, 321, 454
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 2 cut(s) 311, 389
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 3 cut(s) 55, 123, 176
Bsp143I GATC 4 cut(s) 223, 298, 316, 393
BspANI GGCC 2 cut(s) 311, 389
BspMAI CTGCAG 1 cut(s) 273
BspMI ACCTGC 1 cut(s) 276
BspOI GCTAGC 2 cut(s) 164, 357
BspPI GGATC 3 cut(s) 218, 306, 311
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 4 cut(s) 223, 298, 316, 393
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 7
BstC8I GCNNGC 4 cut(s) 162, 198, 287, 355
BstKTI GATC 4 cut(s) 226, 301, 319, 396
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 4 cut(s) 223, 298, 316, 393
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstSCI CCNGG 3 cut(s) 190, 319, 453
BstSFI CTRYAG 1 cut(s) 269
BstSLI GKGCMC 3 cut(s) 55, 123, 176
BstV1I GCAGC 2 cut(s) 196, 337
BsuRI GGCC 2 cut(s) 311, 389
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 4 cut(s) 162, 198, 287, 355
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 256
CviAII CATG 1 cut(s) 391
CviQI GTAC 1 cut(s) 256
DpnI GATC 4 cut(s) 225, 300, 318, 395
DpnII GATC 4 cut(s) 223, 298, 316, 393
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 340
FaeI CATG 1 cut(s) 394
FaiI YATR 4 cut(s) 35, 100, 150, 392
FatI CATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 185, 351
Fsp4HI GCNGC 2 cut(s) 185, 351
FspBI CTAG 3 cut(s) 161, 327, 354
GluI GCNGC 2 cut(s) 185, 351
GsaI CCCAGC 2 cut(s) 116, 179
HaeIII GGCC 2 cut(s) 311, 389
HapII CCGG 4 cut(s) 48, 191, 321, 454
Hin1II CATG 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 363
HpaII CCGG 4 cut(s) 48, 191, 321, 454
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 3 cut(s) 53, 108, 340
Hpy188I TCNGA 2 cut(s) 264, 298
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 3 cut(s) 53, 108, 340
HpyAV CCTTC 2 cut(s) 141, 425
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 3 cut(s) 53, 78, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 4 cut(s) 223, 298, 316, 393
Lsp1109I GCAGC 2 cut(s) 196, 337
MaeI CTAG 3 cut(s) 161, 327, 354
MaeII ACGT 1 cut(s) 205
MalI GATC 4 cut(s) 225, 300, 318, 395
MboI GATC 4 cut(s) 223, 298, 316, 393
MboII GAAGA 4 cut(s) 24, 41, 387, 417
MfeI CAATTG 1 cut(s) 333
MhlI GDGCHC 3 cut(s) 55, 123, 176
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 3 cut(s) 83, 218, 333
MluNI TGGCCA 1 cut(s) 311
MnlI CCTC 4 cut(s) 8, 198, 254, 275
Mox20I TGGCCA 1 cut(s) 311
MscI TGGCCA 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 4 cut(s) 48, 191, 321, 454
MspR9I CCNGG 3 cut(s) 192, 321, 455
MunI CAATTG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 3 cut(s) 192, 321, 455
NdeII GATC 4 cut(s) 223, 298, 316, 393
NheI GCTAGC 2 cut(s) 160, 353
NlaIII CATG 1 cut(s) 394
PkrI GCNGC 2 cut(s) 186, 352
PspFI CCCAGC 2 cut(s) 112, 175
PspPI GGNCC 1 cut(s) 340
PstI CTGCAG 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SatI GCNGC 2 cut(s) 185, 351
Sau3AI GATC 4 cut(s) 223, 298, 316, 393
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 257
ScrFI CCNGG 3 cut(s) 192, 321, 455
SduI GDGCHC 3 cut(s) 55, 123, 176
SetI ASST 7 cut(s) 118, 149, 162, 208, 270, 306, 367
SfcI CTRYAG 1 cut(s) 269
SinI GGWCC 1 cut(s) 340
Sse9I AATT 3 cut(s) 83, 218, 333
SspMI CTAG 3 cut(s) 161, 327, 354
StyD4I CCNGG 3 cut(s) 190, 319, 453
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 83, 218, 333
TatI WGTACW 1 cut(s) 255
TscAI CASTG 1 cut(s) 319
TseI GCWGC 2 cut(s) 184, 350
TspDTI ATGAA 2 cut(s) 375, 444
TspRI CASTG 1 cut(s) 319
VneI GTGCAC 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XspI CTAG 3 cut(s) 161, 327, 354
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.