Rh4BG320900

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001761
Physical Location & Seq
Reverse (-)
48697400 .. 48699503
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG320900.1

Sequence Viewer

Length: 1023 bp
ATGGGTCGTCGTCTAATTGCCGCAACTATCCTCACCTTCACCTTGTTCACCATCGTCATCCTTCCCTCCGAGGCCAAGGGAGAAGGCAAAGGGAACGGCTTACATGTCAGGTTTTACGCTTCGAGTTGCCCCAAGGTTGAGGACATTGTTGCTGAGGTTGTGGCCCGTGTTCATGAGCAAGATCCCAAACTCCCTCCTGCCCTCCTCCGCCTTTTTTTCCATGATTGCTTTGTCAAGGGTTGTGATGCCTCGATCTTGTTGGACGCGACACCATCTGGTGAGCCTATAGAGAAAACATCACCAGCCAATGGTGAAACACTCAGAGGTCTTGAGGTTGTTGATGAGATCAAAGCCCAGGTAGAGCAGGAGTGCCCCCAAACTGTATCCTGCGCTGACATATTAGCATTTGCTGCTCGGGAAGCCGTTTACCTAGCCGGCCTACCCCGTCACAATGTCCCAGCCGGTCGCCGTGACAGTAGGACTTCACGTGCTTCTGATGTCAATGTCAACCTCCCTACACCTGTAACGCCTTTGGGAGACATTATAGACATGTTCGCCAAAAGAGGCTTGACAACAGAAGATATGGTTGTCTTGTCCGGTGCACACTCCATTGGCGAAGCACAATGCACCCAAATTAAAGACAGATTATACAAATATAGCGAAGCTCAGCCCCAAGACCCTTCCCTGGACCCAACCTATGCTGATGAGCTAGCCAGAAAGTGCCCAGCACCAGACACATTACCTGCGAAGCAAGCATTACGTACAATGGTGGACTTTGATCCAACAACACCACTTGACCTCGACAATCAGTACTATGTGAACCTGATGAGAGGGAGAGGCTTGCTTCAATCGGATCAAGTACAGACTACTGATCCCCAAACCGGAGCAATTGTGTACAGAATGGCCGCTAGCTCTGAAACTTGGAGTAAAAAATTTCTCAAGGCCATGATCAACATGGGGAGAATAAATGTTCTCACCAAAGATGAAGGAGAGATAAGGACAAACTGCCGGGCGTATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

340

Amino Acids

37.32

Weight (kDa)

5.53

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 50 - 303 9.3e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 751
AccB7I CCANNNNNTGG 1 cut(s) 308
AccII CGCG 1 cut(s) 266
AciI CCGC 3 cut(s) 21, 208, 906
AclWI GGATC 4 cut(s) 176, 773, 861, 866
AcoI YGGCCR 1 cut(s) 903
AcsI RAATTY 1 cut(s) 932
AcvI CACGTG 1 cut(s) 488
AfaI GTAC 4 cut(s) 763, 812, 861, 896
AfiI CCNNNNNNNGG 3 cut(s) 308, 685, 881
AflIII ACRYGT 2 cut(s) 103, 549
AgsI TTSAA 1 cut(s) 848
AjnI CCWGG 2 cut(s) 354, 684
AluBI AGCT 3 cut(s) 665, 709, 912
AluI AGCT 3 cut(s) 665, 709, 912
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 1 cut(s) 531
Alw44I GTGCAC 1 cut(s) 600
AlwI GGATC 4 cut(s) 176, 773, 861, 866
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 5 cut(s) 72, 162, 436, 903, 942
ApaLI GTGCAC 1 cut(s) 600
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 932
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 2 cut(s) 163, 688
AsuC2I CCSGG 1 cut(s) 1010
AsuHPI GGTGA 7 cut(s) 25, 31, 40, 290, 291, 323, 967
AsuNHI GCTAGC 2 cut(s) 709, 908
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 1 cut(s) 688
BaeGI GKGCMC 3 cut(s) 374, 604, 725
BbrPI CACGTG 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 604
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 59, 280
BceAI ACGGC 3 cut(s) 112, 407, 453
BciT130I CCWGG 2 cut(s) 356, 686
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 1 cut(s) 948
BcnI CCSGG 1 cut(s) 1010
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 3 cut(s) 431, 710, 909
BfmI CTRYAG 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 751
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 3 cut(s) 21, 411, 906
BlpI GCTNAGC 1 cut(s) 666
BlsI GCNGC 3 cut(s) 22, 412, 907
BmcAI AGTACT 1 cut(s) 812
Bme1390I CCNGG 3 cut(s) 356, 686, 1010
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 2 cut(s) 163, 688
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 3 cut(s) 356, 686, 1010
BmsI GCATC 1 cut(s) 235
BmtI GCTAGC 2 cut(s) 713, 912
Bpu10I CCTNAGC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 350, 923
BpuMI CCSGG 1 cut(s) 1010
BsaAI YACGTR 2 cut(s) 488, 761
BsaJI CCNNGG 5 cut(s) 69, 75, 132, 354, 684
BsaWI WCCGGW 2 cut(s) 596, 881
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 685, 881
Bse118I RCCGGY 2 cut(s) 434, 461
BseBI CCWGG 2 cut(s) 356, 686
BseDI CCNNGG 5 cut(s) 69, 75, 132, 354, 684
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 3 cut(s) 308, 685, 881
BseMII CTCAG 3 cut(s) 144, 334, 680
BseRI GAGGAG 1 cut(s) 194
BseSI GKGCMC 3 cut(s) 374, 604, 725
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 2 cut(s) 457, 724
Bsh1236I CGCG 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 5 cut(s) 74, 164, 438, 905, 944
BsiEI CGRYCG 1 cut(s) 466
BsiHKAI GWGCWC 1 cut(s) 604
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 5 cut(s) 435, 462, 597, 882, 1009
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 3 cut(s) 308, 685, 881
BsmAI GTCTC 1 cut(s) 531
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 5 cut(s) 74, 164, 438, 905, 944
BsoBI CYCGRG 1 cut(s) 414
Bsp1286I GDGCHC 3 cut(s) 374, 604, 725
Bsp1407I TGTACA 1 cut(s) 894
Bsp143I GATC 7 cut(s) 181, 252, 345, 778, 853, 871, 948
Bsp1720I GCTNAGC 1 cut(s) 666
BspACI CCGC 3 cut(s) 21, 208, 906
BspANI GGCC 5 cut(s) 74, 164, 438, 905, 944
BspCNI CTCAG 3 cut(s) 145, 333, 679
BspFNI CGCG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 690
BspMI ACCTGC 1 cut(s) 751
BspOI GCTAGC 2 cut(s) 713, 912
BspPI GGATC 4 cut(s) 176, 773, 861, 866
BsrFI RCCGGY 2 cut(s) 434, 461
BsrGI TGTACA 1 cut(s) 894
BssAI RCCGGY 2 cut(s) 434, 461
BssECI CCNNGG 5 cut(s) 69, 75, 132, 354, 684
BssMI GATC 7 cut(s) 181, 252, 345, 778, 853, 871, 948
BssT1I CCWWGG 2 cut(s) 75, 132
Bst2UI CCWGG 2 cut(s) 356, 686
Bst4CI ACNGT 2 cut(s) 382, 476
BstAPI GCANNNNNTGC 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 894
BstBAI YACGTR 2 cut(s) 488, 761
BstC8I GCNNGC 5 cut(s) 436, 711, 753, 842, 910
BstDEI CTNAG 3 cut(s) 153, 320, 666
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 7 cut(s) 184, 255, 348, 781, 856, 874, 951
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 7 cut(s) 181, 252, 345, 778, 853, 871, 948
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 3 cut(s) 410, 419, 752
BstNI CCWGG 2 cut(s) 356, 686
BstNSI RCATGY 2 cut(s) 107, 553
BstSCI CCNGG 3 cut(s) 354, 684, 1008
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 3 cut(s) 374, 604, 725
BstSNI TACGTA 1 cut(s) 761
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 5 cut(s) 74, 164, 438, 905, 944
BtsCI GGATG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 5 cut(s) 436, 711, 753, 842, 910
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 392
Cfr10I RCCGGY 2 cut(s) 434, 461
Cfr13I GGNCC 2 cut(s) 163, 688
CseI GACGC 1 cut(s) 272
Csp6I GTAC 4 cut(s) 762, 811, 860, 895
CviAII CATG 6 cut(s) 104, 173, 221, 550, 946, 955
CviQI GTAC 4 cut(s) 762, 811, 860, 895
DdeI CTNAG 3 cut(s) 153, 320, 666
DpnI GATC 7 cut(s) 183, 254, 347, 780, 855, 873, 950
DpnII GATC 7 cut(s) 181, 252, 345, 778, 853, 871, 948
EaeI YGGCCR 1 cut(s) 903
EciI GGCGGA 1 cut(s) 197
Eco105I TACGTA 1 cut(s) 761
Eco130I CCWWGG 2 cut(s) 75, 132
Eco47I GGWCC 1 cut(s) 688
Eco72I CACGTG 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 354, 684
EcoT14I CCWWGG 2 cut(s) 75, 132
ErhI CCWWGG 2 cut(s) 75, 132
FaeI CATG 6 cut(s) 107, 176, 224, 553, 949, 958
FaqI GGGAC 1 cut(s) 440
FatI CATG 6 cut(s) 103, 172, 220, 549, 945, 954
FbaI TGATCA 1 cut(s) 948
Fnu4HI GCNGC 3 cut(s) 21, 411, 906
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 21, 411, 906
FspBI CTAG 3 cut(s) 431, 710, 909
GlaI GCGC 1 cut(s) 391
GluI GCNGC 3 cut(s) 21, 411, 906
GsaI CCCAGC 2 cut(s) 461, 728
HaeIII GGCC 5 cut(s) 74, 164, 438, 905, 944
HapII CCGG 5 cut(s) 435, 462, 597, 882, 1009
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 392
Hin1II CATG 6 cut(s) 107, 176, 224, 553, 949, 958
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HpaII CCGG 5 cut(s) 435, 462, 597, 882, 1009
HphI GGTGA 7 cut(s) 25, 31, 40, 290, 291, 323, 967
Hpy166II GTNNAC 7 cut(s) 48, 427, 508, 602, 772, 820, 895
Hpy188I TCNGA 5 cut(s) 70, 323, 496, 853, 916
Hpy188III TCNNGA 3 cut(s) 173, 329, 416
Hpy8I GTNNAC 7 cut(s) 48, 427, 508, 602, 772, 820, 895
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 5 cut(s) 46, 71, 77, 690, 980
HpyCH4III ACNGT 2 cut(s) 382, 476
HpyCH4IV ACGT 2 cut(s) 487, 760
HpyCH4V TGCA 2 cut(s) 602, 627
HpyF10VI GCNNNNNNNGC 3 cut(s) 410, 419, 752
HpyF3I CTNAG 3 cut(s) 153, 320, 666
HpySE526I ACGT 2 cut(s) 487, 760
Hsp92II CATG 6 cut(s) 107, 176, 224, 553, 949, 958
HspAI GCGC 1 cut(s) 390
KroI GCCGGC 1 cut(s) 434
KroNI GCCGGC 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 7 cut(s) 181, 252, 345, 778, 853, 871, 948
LmnI GCTCC 1 cut(s) 884
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 235
MaeI CTAG 3 cut(s) 431, 710, 909
MaeII ACGT 2 cut(s) 487, 760
MaeIII GTNAC 3 cut(s) 446, 470, 523
MalI GATC 7 cut(s) 183, 254, 347, 780, 855, 873, 950
MboI GATC 7 cut(s) 181, 252, 345, 778, 853, 871, 948
MboII GAAGA 1 cut(s) 590
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 3 cut(s) 374, 604, 725
MluCI AATT 4 cut(s) 15, 633, 888, 932
MmeI TCCRAC 2 cut(s) 240, 806
MroNI GCCGGC 1 cut(s) 434
MseI TTAA 1 cut(s) 636
MspI CCGG 5 cut(s) 435, 462, 597, 882, 1009
MspR9I CCNGG 3 cut(s) 356, 686, 1010
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 2 cut(s) 356, 686
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 410, 419, 752
NaeI GCCGGC 1 cut(s) 436
NciI CCSGG 1 cut(s) 1010
NdeII GATC 7 cut(s) 181, 252, 345, 778, 853, 871, 948
NgoMIV GCCGGC 1 cut(s) 434
NheI GCTAGC 2 cut(s) 709, 908
NlaIII CATG 6 cut(s) 107, 176, 224, 553, 949, 958
NlaIV GGNNCC 1 cut(s) 690
NmuCI GTSAC 2 cut(s) 446, 470
NspI RCATGY 2 cut(s) 107, 553
PagI TCATGA 1 cut(s) 172
PciI ACATGT 2 cut(s) 103, 549
PdiI GCCGGC 1 cut(s) 436
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 3 cut(s) 22, 412, 907
PmaCI CACGTG 1 cut(s) 488
PmlI CACGTG 1 cut(s) 488
Ppu21I YACGTR 2 cut(s) 488, 761
PscI ACATGT 2 cut(s) 103, 549
Psp6I CCWGG 2 cut(s) 354, 684
PspCI CACGTG 1 cut(s) 488
PspFI CCCAGC 2 cut(s) 457, 724
PspGI CCWGG 2 cut(s) 354, 684
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 2 cut(s) 163, 688
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 4 cut(s) 763, 812, 861, 896
RsaNI GTAC 4 cut(s) 762, 811, 860, 895
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 3 cut(s) 21, 411, 906
Sau3AI GATC 7 cut(s) 181, 252, 345, 778, 853, 871, 948
Sau96I GGNCC 2 cut(s) 163, 688
ScaI AGTACT 1 cut(s) 812
ScrFI CCNGG 3 cut(s) 356, 686, 1010
SduI GDGCHC 3 cut(s) 374, 604, 725
SfaNI GCATC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 688
SmlI CTYRAG 2 cut(s) 329, 938
SmoI CTYRAG 2 cut(s) 329, 938
SnaBI TACGTA 1 cut(s) 761
Sse9I AATT 4 cut(s) 15, 633, 888, 932
SsiI CCGC 3 cut(s) 21, 208, 906
SspMI CTAG 3 cut(s) 431, 710, 909
StyD4I CCNGG 3 cut(s) 354, 684, 1008
StyI CCWWGG 2 cut(s) 75, 132
TaaI ACNGT 2 cut(s) 382, 476
TaiI ACGT 2 cut(s) 490, 763
TaqI TCGA 3 cut(s) 122, 251, 801
TasI AATT 4 cut(s) 15, 633, 888, 932
TatI WGTACW 3 cut(s) 810, 859, 894
TauI GCSGC 2 cut(s) 23, 908
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TseFI GTSAC 2 cut(s) 446, 470
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 2 cut(s) 446, 470
TspDTI ATGAA 2 cut(s) 161, 999
Van91I CCANNNNNTGG 1 cut(s) 308
VneI GTGCAC 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 688
XapI RAATTY 1 cut(s) 932
XceI RCATGY 2 cut(s) 107, 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XspI CTAG 3 cut(s) 431, 710, 909
ZrmI AGTACT 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.