RchiOBHm_Chr4g0433321

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001761
Physical Location & Seq
Forward (+)
57501612 .. 57502598
987 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40184

Sequence Viewer

Length: 642 bp
ATGAGTCGTCGTCTAATTGCCGCAACTATCCTCACATTCACCTTGTTCACCATCGTCATCCTTCCCTCCGCGGCCCAGGAACCAGGCGAGGGACCGGTGAAAGTAGACGGAGGGCACGGCTTGCATGTCGGGTTTTACGCTAAGAGTTGCCCGAATGTTGAGGACATTGTAGCTGATGTTGTAAAACGTGTTCAGCAGAATGATCCCAAGCTTCCTCCTGCCCTCATCCGCCTCTTTTTCCATGATTGTTTTGTCAAGGGTTGTGATGCCTCAATCCTGTTGGACACCACAGCATCTGGCAGCAACCTTGTAGAGAAAACATCAACAGCCAATGGTGAAACACTCAGAGGTCTTGAGGTCATTGATGAGATCAAGGCCGAGCTCGAGAAGCAATGCCCACAAACTGTATCCTGCGCTGACATATTAGCATATGCTGCTCGGGAAGCCGTTGTACTTGCCGGCCTACCACGTCACAATGTCCCCGCCGGTCGCCGTGACAGTAGGACTTCACGTTCTGACGATGCCGATGAAAACCTCCCTACAGCAAGAACGCCTCTGAATGACCTAATACACATTTTCGCCAGGAGAAATTTCACAGTAGAAGAAATGGTTGTCTTTTACAGACAGACTATACACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

213

Amino Acids

23.31

Weight (kDa)

5.87

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 57 - 206 1.5e-48 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 71
AciI CCGC 5 cut(s) 21, 69, 71, 229, 483
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 589
AfaI GTAC 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 2 cut(s) 187, 634
AgeI ACCGGT 1 cut(s) 94
AjiI CACGTC 1 cut(s) 470
AjnI CCWGG 3 cut(s) 75, 82, 581
AloI GAACNNNNNNTCC 2 cut(s) 496, 528
AluBI AGCT 3 cut(s) 173, 211, 382
AluI AGCT 3 cut(s) 173, 211, 382
Alw21I GWGCWC 1 cut(s) 384
AlwI GGATC 1 cut(s) 197
AlwNI CAGNNNCTG 1 cut(s) 296
Ama87I CYCGRG 2 cut(s) 383, 438
AoxI GGCC 3 cut(s) 72, 375, 460
ApeKI GCWGC 2 cut(s) 300, 434
ApoI RAATTY 1 cut(s) 589
AsiGI ACCGGT 1 cut(s) 94
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 2 cut(s) 73, 92
AsuHPI GGTGA 4 cut(s) 31, 40, 109, 347
AvaI CYCGRG 2 cut(s) 383, 438
AvaII GGWCC 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 384
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 312, 421
BccI CCATC 1 cut(s) 59
BceAI ACGGC 3 cut(s) 133, 431, 477
BciT130I CCWGG 3 cut(s) 77, 84, 583
BciVI GTATCC 1 cut(s) 418
BfmI CTRYAG 1 cut(s) 540
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 4 cut(s) 21, 72, 301, 435
BlsI GCNGC 4 cut(s) 22, 73, 302, 436
Bme1390I CCNGG 3 cut(s) 77, 84, 583
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 2 cut(s) 383, 438
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 73, 92
BmiI GGNNCC 2 cut(s) 81, 93
BmrFI CCNGG 3 cut(s) 77, 84, 583
BmsI GCATC 3 cut(s) 256, 302, 511
BpuEI CTTGAG 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 69, 75
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 3 cut(s) 94, 458, 485
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 3 cut(s) 77, 84, 583
BseDI CCNNGG 2 cut(s) 69, 75
BseGI GGATG 2 cut(s) 57, 225
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 358
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 2 cut(s) 312, 421
Bsh1236I CGCG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 490
BshFI GGCC 3 cut(s) 74, 377, 462
BshTI ACCGGT 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 384
BsiHKCI CYCGRG 2 cut(s) 383, 438
BsiSI CCGG 3 cut(s) 95, 459, 486
BslFI GGGAC 2 cut(s) 105, 464
BslI CCNNNNNNNGG 1 cut(s) 89
BsmFI GGGAC 2 cut(s) 105, 464
BsnI GGCC 3 cut(s) 74, 377, 462
BsoBI CYCGRG 2 cut(s) 383, 438
Bsp1286I GDGCHC 2 cut(s) 117, 384
Bsp143I GATC 2 cut(s) 202, 369
BspACI CCGC 5 cut(s) 21, 69, 71, 229, 483
BspANI GGCC 3 cut(s) 74, 377, 462
BspCNI CTCAG 1 cut(s) 357
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 81, 93
BspPI GGATC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 398
BsrFI RCCGGY 3 cut(s) 94, 458, 485
BssAI RCCGGY 3 cut(s) 94, 458, 485
BssECI CCNNGG 2 cut(s) 69, 75
BssMI GATC 2 cut(s) 202, 369
Bst2UI CCWGG 3 cut(s) 77, 84, 583
Bst4CI ACNGT 3 cut(s) 406, 500, 598
BstAPI GCANNNNNTGC 2 cut(s) 121, 434
BstC8I GCNNGC 2 cut(s) 122, 460
BstDEI CTNAG 2 cut(s) 141, 344
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 57, 225
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 2 cut(s) 205, 372
BstMBI GATC 2 cut(s) 202, 369
BstMCI CGRYCG 1 cut(s) 490
BstMWI GCNNNNNNNGC 4 cut(s) 121, 388, 434, 443
BstNI CCWGG 3 cut(s) 77, 84, 583
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 3 cut(s) 75, 82, 581
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 312, 421
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 3 cut(s) 74, 377, 462
BtgI CCRYGG 1 cut(s) 69
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 2 cut(s) 57, 225
Cac8I GCNNGC 2 cut(s) 122, 460
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 1 cut(s) 416
Cfr10I RCCGGY 3 cut(s) 94, 458, 485
Cfr13I GGNCC 2 cut(s) 73, 92
Cfr42I CCGCGG 1 cut(s) 72
Csp6I GTAC 1 cut(s) 452
CspAI ACCGGT 1 cut(s) 94
CviAII CATG 2 cut(s) 125, 242
CviJI RGCY 9 cut(s) 74, 120, 173, 211, 329, 377, 382, 446, 462
CviKI_1 RGCY 9 cut(s) 74, 120, 173, 211, 329, 377, 382, 446, 462
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 2 cut(s) 141, 344
DpnI GATC 2 cut(s) 204, 371
DpnII GATC 2 cut(s) 202, 369
EciI GGCGGA 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 382
Eco88I CYCGRG 2 cut(s) 383, 438
EcoICRI GAGCTC 1 cut(s) 382
EcoRII CCWGG 3 cut(s) 75, 82, 581
EcoT38I GRGCYC 1 cut(s) 384
FaeI CATG 2 cut(s) 128, 245
FaiI YATR 6 cut(s) 126, 243, 422, 430, 432, 632
FaqI GGGAC 2 cut(s) 105, 464
FatI CATG 2 cut(s) 124, 241
FauI CCCGC 1 cut(s) 490
FauNDI CATATG 1 cut(s) 430
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 4 cut(s) 21, 72, 301, 435
FokI GGATG 2 cut(s) 44, 212
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 4 cut(s) 21, 72, 301, 435
GlaI GCGC 1 cut(s) 415
GluI GCNGC 4 cut(s) 21, 72, 301, 435
HaeIII GGCC 3 cut(s) 74, 377, 462
HapII CCGG 3 cut(s) 95, 459, 486
HhaI GCGC 1 cut(s) 416
Hin1II CATG 2 cut(s) 128, 245
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 1 cut(s) 4
HpaII CCGG 3 cut(s) 95, 459, 486
HphI GGTGA 4 cut(s) 31, 40, 109, 347
Hpy166II GTNNAC 2 cut(s) 48, 106
Hpy188I TCNGA 3 cut(s) 347, 517, 558
Hpy188III TCNNGA 3 cut(s) 353, 385, 440
Hpy8I GTNNAC 2 cut(s) 48, 106
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 3 cut(s) 406, 500, 598
HpyCH4IV ACGT 4 cut(s) 187, 469, 511, 636
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 388, 434, 443
HpyF3I CTNAG 2 cut(s) 141, 344
HpySE526I ACGT 4 cut(s) 187, 469, 511, 636
Hsp92II CATG 2 cut(s) 128, 245
HspAI GCGC 1 cut(s) 414
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 2 cut(s) 202, 369
Lsp1109I GCAGC 2 cut(s) 312, 421
LweI GCATC 3 cut(s) 256, 302, 511
MaeII ACGT 4 cut(s) 187, 469, 511, 636
MaeIII GTNAC 2 cut(s) 470, 494
MalI GATC 2 cut(s) 204, 371
MboI GATC 2 cut(s) 202, 369
MboII GAAGA 1 cut(s) 614
MhlI GDGCHC 2 cut(s) 117, 384
MluCI AATT 2 cut(s) 15, 589
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 261
MroNI GCCGGC 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 3 cut(s) 95, 459, 486
MspR9I CCNGG 3 cut(s) 77, 84, 583
MvaI CCWGG 3 cut(s) 77, 84, 583
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 121, 388, 434, 443
NaeI GCCGGC 1 cut(s) 460
NdeI CATATG 1 cut(s) 430
NdeII GATC 2 cut(s) 202, 369
NgoMIV GCCGGC 1 cut(s) 458
NlaIII CATG 2 cut(s) 128, 245
NlaIV GGNNCC 2 cut(s) 81, 93
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 2 cut(s) 470, 494
NspI RCATGY 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 383
PdiI GCCGGC 1 cut(s) 460
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 4 cut(s) 22, 73, 302, 436
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 3 cut(s) 75, 82, 581
PspGI CCWGG 3 cut(s) 75, 82, 581
PspN4I GGNNCC 2 cut(s) 81, 93
PspPI GGNCC 2 cut(s) 73, 92
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PstNI CAGNNNCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
SacI GAGCTC 1 cut(s) 384
SacII CCGCGG 1 cut(s) 72
SatI GCNGC 4 cut(s) 21, 72, 301, 435
Sau3AI GATC 2 cut(s) 202, 369
Sau96I GGNCC 2 cut(s) 73, 92
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 77, 84, 583
SduI GDGCHC 2 cut(s) 117, 384
SfaNI GCATC 3 cut(s) 256, 302, 511
SfcI CTRYAG 1 cut(s) 540
Sfr274I CTCGAG 1 cut(s) 383
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 383
SmlI CTYRAG 2 cut(s) 353, 383
SmoI CTYRAG 2 cut(s) 353, 383
Sse9I AATT 2 cut(s) 15, 589
SsiI CCGC 5 cut(s) 21, 69, 71, 229, 483
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 3 cut(s) 75, 82, 581
TaaI ACNGT 3 cut(s) 406, 500, 598
TaiI ACGT 4 cut(s) 190, 472, 514, 639
TaqI TCGA 1 cut(s) 384
TasI AATT 2 cut(s) 15, 589
TatI WGTACW 1 cut(s) 451
TauI GCSGC 2 cut(s) 23, 74
TseFI GTSAC 2 cut(s) 470, 494
TseI GCWGC 2 cut(s) 300, 434
Tsp45I GTSAC 2 cut(s) 470, 494
TspDTI ATGAA 1 cut(s) 543
TspGWI ACGGA 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 1 cut(s) 589
XceI RCATGY 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.