MD13G1097600.v1.1

Belongs to the peroxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0001761
Physical Location & Seq
Forward (+)
6930968 .. 6932144
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1097600.v1.1.491

Sequence Viewer

Length: 1020 bp
ATGGAGATAGGCCCTCGTTTAATTACAGCGGCGGTTTTTGCCGTCACCTTGTGTTCCATGATCACTGTTCCTTGTTCGGCAGATGAAGTGAACAACCCGGGGAATGGGTTGCATGTGGGATTTTACGATCGGAAATGTCCCAATTTGGAGGAAATTGTGACTGACGTTGTGGCCAAGGCTGTAGAGACGGACCAAAAGCTTCCTGCTGGCCTCATTCGCCTCTTTTTCCACGATTGCTTTGTGAAGGGATGCGATGCATCAATTCTGTTGGATTCAACGCCCTCTAACGAGCCCGTAGAGATGCAATCACCGGCCAACGGTGGAATCCGAGGTATCGAAGTCATTGAAGAGATCAAGGCTAGGCTAGAGCAGGAATGCCCGGAAACCGTCTCATGTGCCGACATACTAGCCTTTGCCACACGGGAAGCTGTGGCTTTCTCCGGTTTACCCCGTCACCAAGTCCCCGCTGGACGCCGCGACAGCCGCACTTCCCGTGCCTCCGACGTCATTCTTCCTTCTCCCGCAACACCAATGGACGAGATCATAGACTTCTTCTCCAGAAGAAACTTGACCCCAGAGGAAATGGTCGTCTTGTTTGGCGCGCACTCCATCGGCACCGTCCACTGCAGCTTCTTCGACTATAGGCTGTACAATTTCGCACCAGGTCAGCCGCAAGATCCTTCACTAAACCCAGTATTTGCGGCTGACCTGGCTCAACAGTGCCCTGCACCCAACACATTGCAGGGTGAGGAGGCTGAAAACAAGGTTGTTGACTTAGATACTACACCGCTTGTCCTGGACAATCACTACTACATGAACCTGATACAGGGGAGAGCATTGATGCAATCGGATCAGGCTCTGGCGACCAATCCTCGCACCGGCGCGGAGGTGGCGAAACTGGCTATTAGGTCTGATTCTTGGGCTCGGCAATTTGTTAGGGCCATAATTAAGATGGGGAGAATCAACGTTCTCACTGGGGATGCAGGAGAGATAAGAAAAAATTGTCGGAACTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

340

Amino Acids

37.12

Weight (kDa)

5.03

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 301 8e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 507
AccB1I GGYRCC 1 cut(s) 614
AccII CGCG 3 cut(s) 477, 602, 884
AclI AACGTT 1 cut(s) 966
AclWI GGATC 2 cut(s) 671, 858
AcoI YGGCCR 2 cut(s) 171, 312
AcyI GRCGYC 2 cut(s) 472, 504
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 4 cut(s) 104, 317, 826, 878
AgsI TTSAA 2 cut(s) 276, 347
AjnI CCWGG 3 cut(s) 661, 708, 795
AluBI AGCT 3 cut(s) 199, 428, 630
AluI AGCT 3 cut(s) 199, 428, 630
Alw26I GTCTC 2 cut(s) 179, 394
AlwI GGATC 2 cut(s) 671, 858
AlwNI CAGNNNCTG 1 cut(s) 859
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 5 cut(s) 10, 171, 208, 312, 939
ApeKI GCWGC 1 cut(s) 627
AspLEI GCGC 3 cut(s) 602, 604, 884
AspS9I GGNCC 3 cut(s) 11, 190, 939
AsuC2I CCSGG 3 cut(s) 98, 99, 380
AsuHPI GGTGA 4 cut(s) 37, 300, 446, 758
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 725
BalI TGGCCA 1 cut(s) 173
BanI GGYRCC 1 cut(s) 614
BanII GRGCYC 2 cut(s) 294, 925
BbvI GCAGC 1 cut(s) 639
BccI CCATC 2 cut(s) 617, 946
BceAI ACGGC 1 cut(s) 26
BcgI CGANNNNNNTGC 2 cut(s) 616, 650
BciT130I CCWGG 3 cut(s) 663, 710, 797
BclI TGATCA 1 cut(s) 60
BcnI CCSGG 3 cut(s) 98, 99, 380
BcoDI GTCTC 2 cut(s) 179, 394
BfaI CTAG 3 cut(s) 360, 365, 407
BfmI CTRYAG 3 cut(s) 180, 625, 640
BisI GCNGC 6 cut(s) 30, 475, 484, 628, 671, 702
BlsI GCNGC 6 cut(s) 31, 476, 485, 629, 672, 703
Bme1390I CCNGG 6 cut(s) 98, 99, 380, 663, 710, 797
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 11, 190, 939
BmiI GGNNCC 1 cut(s) 616
BmrFI CCNGG 6 cut(s) 98, 99, 380, 663, 710, 797
BmrI ACTGGG 2 cut(s) 686, 984
BmsI GCATC 6 cut(s) 239, 244, 266, 291, 831, 970
BmuI ACTGGG 2 cut(s) 686, 984
BpmI CTGGAG 1 cut(s) 541
BpuMI CCSGG 3 cut(s) 98, 99, 380
BsaHI GRCGYC 2 cut(s) 472, 504
BsaJI CCNNGG 4 cut(s) 97, 98, 174, 328
BsaWI WCCGGW 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 317, 826, 878
Bse118I RCCGGY 2 cut(s) 310, 878
Bse1I ACTGG 3 cut(s) 692, 903, 979
Bse3DI GCAATG 1 cut(s) 737
BseBI CCWGG 3 cut(s) 663, 710, 797
BseDI CCNNGG 4 cut(s) 97, 98, 174, 328
BseGI GGATG 2 cut(s) 254, 985
BseLI CCNNNNNNNGG 4 cut(s) 104, 317, 826, 878
BseMI GCAATG 1 cut(s) 737
BseNI ACTGG 3 cut(s) 692, 903, 979
BsePI GCGCGC 1 cut(s) 600
BseRI GAGGAG 1 cut(s) 764
BseSI GKGCMC 1 cut(s) 725
BseXI GCAGC 1 cut(s) 639
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 3 cut(s) 477, 602, 884
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 5 cut(s) 12, 173, 210, 314, 941
BshNI GGYRCC 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 5 cut(s) 98, 311, 380, 441, 879
BslFI GGGAC 2 cut(s) 123, 446
BslI CCNNNNNNNGG 4 cut(s) 104, 317, 826, 878
BsmAI GTCTC 2 cut(s) 179, 394
BsmBI CGTCTC 2 cut(s) 179, 394
BsmFI GGGAC 2 cut(s) 123, 446
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 5 cut(s) 12, 173, 210, 314, 941
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 3 cut(s) 294, 725, 925
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 6 cut(s) 60, 127, 351, 540, 676, 850
BspANI GGCC 5 cut(s) 12, 173, 210, 314, 941
BspFNI CGCG 3 cut(s) 477, 602, 884
BspLI GGNNCC 1 cut(s) 616
BspMAI CTGCAG 1 cut(s) 629
BspPI GGATC 2 cut(s) 671, 858
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 737
BsrFI RCCGGY 2 cut(s) 310, 878
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 3 cut(s) 692, 903, 979
BssAI RCCGGY 2 cut(s) 310, 878
BssECI CCNNGG 4 cut(s) 97, 98, 174, 328
BssHII GCGCGC 1 cut(s) 600
BssMI GATC 6 cut(s) 60, 127, 351, 540, 676, 850
BssNI GRCGYC 2 cut(s) 472, 504
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 3 cut(s) 663, 710, 797
Bst4CI ACNGT 5 cut(s) 67, 320, 388, 619, 720
Bst6I CTCTTC 1 cut(s) 342
BstACI GRCGYC 2 cut(s) 472, 504
BstAUI TGTACA 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 208, 602
BstDEI CTNAG 1 cut(s) 775
BstENI CCTNNNNNAGG 1 cut(s) 824
BstF5I GGATG 2 cut(s) 254, 985
BstFNI CGCG 3 cut(s) 477, 602, 884
BstHHI GCGC 3 cut(s) 602, 604, 884
BstKTI GATC 6 cut(s) 63, 130, 354, 543, 679, 853
BstMAI GTCTC 2 cut(s) 179, 394
BstMBI GATC 6 cut(s) 60, 127, 351, 540, 676, 850
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 7 cut(s) 38, 216, 480, 483, 710, 890, 899
BstNI CCWGG 3 cut(s) 663, 710, 797
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 6 cut(s) 96, 97, 378, 661, 708, 795
BstSFI CTRYAG 3 cut(s) 180, 625, 640
BstSLI GKGCMC 1 cut(s) 725
BstUI CGCG 3 cut(s) 477, 602, 884
BstV1I GCAGC 1 cut(s) 639
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 5 cut(s) 12, 173, 210, 314, 941
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 254, 985
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 4 cut(s) 63, 622, 725, 972
Cac8I GCNNGC 2 cut(s) 208, 602
CaiI CAGNNNCTG 1 cut(s) 859
CfoI GCGC 3 cut(s) 602, 604, 884
Cfr10I RCCGGY 2 cut(s) 310, 878
Cfr13I GGNCC 3 cut(s) 11, 190, 939
Cfr9I CCCGGG 1 cut(s) 97
CseI GACGC 1 cut(s) 480
CsiI ACCWGGT 1 cut(s) 661
Csp6I GTAC 1 cut(s) 649
CviAII CATG 4 cut(s) 58, 113, 393, 814
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 1 cut(s) 775
DpnI GATC 6 cut(s) 62, 129, 353, 542, 678, 852
DpnII GATC 6 cut(s) 60, 127, 351, 540, 676, 850
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 2 cut(s) 171, 312
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 2 cut(s) 294, 925
Eco47I GGWCC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 97
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoO109I RGGNCCY 1 cut(s) 11
EcoRII CCWGG 3 cut(s) 661, 708, 795
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 2 cut(s) 294, 925
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 2 cut(s) 179, 394
FaeI CATG 4 cut(s) 61, 116, 396, 817
FaiI YATR 8 cut(s) 59, 114, 394, 404, 545, 642, 815, 944
FaqI GGGAC 2 cut(s) 123, 446
FatI CATG 4 cut(s) 57, 112, 392, 813
FauI CCCGC 2 cut(s) 472, 529
FbaI TGATCA 1 cut(s) 60
Fnu4HI GCNGC 6 cut(s) 30, 475, 484, 628, 671, 702
FokI GGATG 2 cut(s) 261, 992
FriOI GRGCYC 2 cut(s) 294, 925
Fsp4HI GCNGC 6 cut(s) 30, 475, 484, 628, 671, 702
FspBI CTAG 3 cut(s) 360, 365, 407
GlaI GCGC 3 cut(s) 601, 603, 883
GluI GCNGC 6 cut(s) 30, 475, 484, 628, 671, 702
GsuI CTGGAG 1 cut(s) 541
HaeIII GGCC 5 cut(s) 12, 173, 210, 314, 941
HapII CCGG 5 cut(s) 98, 311, 380, 441, 879
HgaI GACGC 1 cut(s) 480
HhaI GCGC 3 cut(s) 602, 604, 884
Hin1I GRCGYC 2 cut(s) 472, 504
Hin1II CATG 4 cut(s) 61, 116, 396, 817
Hin6I GCGC 3 cut(s) 600, 602, 882
HinP1I GCGC 3 cut(s) 600, 602, 882
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 272, 324, 914, 960
HpaII CCGG 5 cut(s) 98, 311, 380, 441, 879
HphI GGTGA 4 cut(s) 37, 300, 446, 758
Hpy166II GTNNAC 4 cut(s) 91, 446, 622, 772
Hpy188I TCNGA 6 cut(s) 132, 329, 502, 850, 913, 1008
Hpy188III TCNNGA 1 cut(s) 558
Hpy8I GTNNAC 4 cut(s) 91, 446, 622, 772
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 3 cut(s) 238, 525, 690
HpyCH4III ACNGT 5 cut(s) 67, 320, 388, 619, 720
HpyCH4IV ACGT 3 cut(s) 165, 504, 966
HpyCH4V TGCA 8 cut(s) 112, 257, 304, 627, 728, 742, 844, 983
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 216, 480, 483, 710, 890, 899
HpyF3I CTNAG 1 cut(s) 775
HpySE526I ACGT 3 cut(s) 165, 504, 966
Hsp92I GRCGYC 2 cut(s) 472, 504
Hsp92II CATG 4 cut(s) 61, 116, 396, 817
HspAI GCGC 3 cut(s) 600, 602, 882
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 6 cut(s) 60, 127, 351, 540, 676, 850
Lsp1109I GCAGC 1 cut(s) 639
LweI GCATC 6 cut(s) 239, 244, 266, 291, 831, 970
MabI ACCWGGT 1 cut(s) 661
MaeI CTAG 3 cut(s) 360, 365, 407
MaeII ACGT 3 cut(s) 165, 504, 966
MaeIII GTNAC 3 cut(s) 43, 157, 452
MalI GATC 6 cut(s) 62, 129, 353, 542, 678, 852
MboI GATC 6 cut(s) 60, 127, 351, 540, 676, 850
MboII GAAGA 5 cut(s) 359, 503, 544, 573, 625
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 3 cut(s) 294, 725, 925
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 8 cut(s) 21, 142, 153, 261, 652, 929, 945, 1000
MluNI TGGCCA 1 cut(s) 173
MmeI TCCRAC 3 cut(s) 249, 525, 986
Mox20I TGGCCA 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 259
MscI TGGCCA 1 cut(s) 173
MseI TTAA 3 cut(s) 20, 948, 1014
Msp20I TGGCCA 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 29, 467
MspI CCGG 5 cut(s) 98, 311, 380, 441, 879
MspR9I CCNGG 6 cut(s) 98, 99, 380, 663, 710, 797
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 3 cut(s) 663, 710, 797
MvnI CGCG 3 cut(s) 477, 602, 884
MwoI GCNNNNNNNGC 7 cut(s) 38, 216, 480, 483, 710, 890, 899
NciI CCSGG 3 cut(s) 98, 99, 380
NdeII GATC 6 cut(s) 60, 127, 351, 540, 676, 850
NlaIII CATG 4 cut(s) 61, 116, 396, 817
NlaIV GGNNCC 1 cut(s) 616
NmeAIII GCCGAG 1 cut(s) 904
NmuCI GTSAC 3 cut(s) 43, 157, 452
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 1 cut(s) 116
PauI GCGCGC 1 cut(s) 600
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 4 cut(s) 272, 324, 914, 960
PfoI TCCNGGA 1 cut(s) 795
PkrI GCNGC 6 cut(s) 31, 476, 485, 629, 672, 703
Ple19I CGATCG 1 cut(s) 130
Psp1406I AACGTT 1 cut(s) 966
Psp6I CCWGG 3 cut(s) 661, 708, 795
PspGI CCWGG 3 cut(s) 661, 708, 795
PspN4I GGNNCC 1 cut(s) 616
PspPI GGNCC 3 cut(s) 11, 190, 939
PstI CTGCAG 1 cut(s) 629
PstNI CAGNNNCTG 1 cut(s) 859
PsuI RGATCY 1 cut(s) 676
PteI GCGCGC 1 cut(s) 600
PvuI CGATCG 1 cut(s) 130
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
SaqAI TTAA 3 cut(s) 20, 948, 1014
SatI GCNGC 6 cut(s) 30, 475, 484, 628, 671, 702
Sau3AI GATC 6 cut(s) 60, 127, 351, 540, 676, 850
Sau96I GGNCC 3 cut(s) 11, 190, 939
ScrFI CCNGG 6 cut(s) 98, 99, 380, 663, 710, 797
SduI GDGCHC 3 cut(s) 294, 725, 925
SexAI ACCWGGT 1 cut(s) 661
SfaNI GCATC 6 cut(s) 239, 244, 266, 291, 831, 970
SfcI CTRYAG 3 cut(s) 180, 625, 640
SgrAI CRCCGGYG 1 cut(s) 878
SinI GGWCC 1 cut(s) 190
SmaI CCCGGG 1 cut(s) 99
Sse9I AATT 8 cut(s) 21, 142, 153, 261, 652, 929, 945, 1000
SspMI CTAG 3 cut(s) 360, 365, 407
StyD4I CCNGG 6 cut(s) 96, 97, 378, 661, 708, 795
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 5 cut(s) 67, 320, 388, 619, 720
TaiI ACGT 3 cut(s) 168, 507, 969
TaqI TCGA 2 cut(s) 336, 636
TasI AATT 8 cut(s) 21, 142, 153, 261, 652, 929, 945, 1000
TatI WGTACW 1 cut(s) 648
TauI GCSGC 5 cut(s) 32, 477, 486, 673, 704
TfiI GAWTC 4 cut(s) 272, 324, 914, 960
Tru1I TTAA 3 cut(s) 20, 948, 1014
Tru9I TTAA 3 cut(s) 20, 948, 1014
TscAI CASTG 4 cut(s) 70, 629, 725, 979
TseFI GTSAC 3 cut(s) 43, 157, 452
TseI GCWGC 1 cut(s) 627
Tsp45I GTSAC 3 cut(s) 43, 157, 452
TspDTI ATGAA 2 cut(s) 99, 830
TspGWI ACGGA 1 cut(s) 203
TspMI CCCGGG 1 cut(s) 97
TspRI CASTG 4 cut(s) 70, 629, 725, 979
VpaK11BI GGWCC 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 824
XceI RCATGY 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 2 cut(s) 464, 949
XmaI CCCGGG 1 cut(s) 97
XspI CTAG 3 cut(s) 360, 365, 407
ZraI GACGTC 1 cut(s) 505
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.