Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257897.1

Orthogroup ID

OG0001761

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 260

Gene Structure 260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 238 bp

atgggtcgtcgtctaattgccgcaactatcctcaccttcaccttgttcaccatcgtcatccttccctccgaggccaagggagaaggcaaagggaacggcttacatgtcgggttttacgcttcgagttgccccaaggttgaggacactgttgctgaggttgtggcccgtgttcatgagcaagatcccaagctccctcctgccctcctccgcctttttttccatgattggctttgtcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

79

Amino Acids

8.72

Weight (kDa)

6.81

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001761)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25120 FvH4_4g25140
malus_domestica	MD13G1097600.v1.1 MD13G1097700.v1.1 MD16G1098700.v1.1 MD16G1098800.v1.1
prunus_persica	Prupe.1G247700_v2.0.a1 Prupe.1G247800_v2.0.a1
pyrus_communis	pycom13g08540
rosa_chinensis	RchiOBHm_Chr4g0432321 RchiOBHm_Chr4g0432331 RchiOBHm_Chr4g0433321 RchiOBHm_Chr4g0433341
rosa_laevigata	RLG00000001640 RLG00000006762 RLG00000006763 RLG00000006853
rosa_multiflora	Rmu_co8257897.1_g000001 Rmu_co8369943.1_g000001 Rmu_sc0000354.1_g000009 Rmu_sc0000354.1_g000012 Rmu_sc0001772.1_g000035
rosa_roxburghii	Rroxscaffold_3G00232110 Rroxscaffold_5G00374880 Rroxscaffold_5G00374910
rosa_rugosa	Rorug04G0257100 Rorug04G0268000
rosa_samantha	Rh4AG313300 Rh4AG322600 Rh4AG322700 Rh4BG320900 Rh4BG330100 Rh4BG330200 Rh4CG336100 Rh4CG345500 Rh4CG345600 Rh4CG345800 Rh4DG316400 Rh4DG316500 Rh4DG326800 Rh4DG326900 Rh7AG394400
rosa_wichuraiana	Rw0G000490 Rw0G023850 Rw4G027240 Rw4G027920 Rw4G027930 Rw7G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	21, 208
AclWI	GGATC	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	103
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	2 cut(s)	72, 162
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	25, 31, 40
BbvCI	CCTCAGC	1 cut(s)	153
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	163
Bpu10I	CCTNAGC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	69, 75, 132
BseDI	CCNNGG	3 cut(s)	69, 75, 132
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	74, 164
BsnI	GGCC	2 cut(s)	74, 164
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	2 cut(s)	21, 208
BspANI	GGCC	2 cut(s)	74, 164
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	172
BspPI	GGATC	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	69, 75, 132
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	2 cut(s)	75, 132
Bst4CI	ACNGT	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	74, 164
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	144
CciI	TCATGA	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	3 cut(s)	104, 173, 221
CviJI	RGCY	5 cut(s)	74, 99, 164, 190, 229
CviKI_1	RGCY	5 cut(s)	74, 99, 164, 190, 229
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	75, 132
EcoT14I	CCWWGG	2 cut(s)	75, 132
ErhI	CCWWGG	2 cut(s)	75, 132
FaeI	CATG	3 cut(s)	107, 176, 224
FaiI	YATR	3 cut(s)	105, 174, 222
FatI	CATG	3 cut(s)	103, 172, 220
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	74, 164
Hin1II	CATG	3 cut(s)	107, 176, 224
HphI	GGTGA	3 cut(s)	25, 31, 40
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	3 cut(s)	46, 71, 77
HpyCH4III	ACNGT	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	107, 176, 224
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	1 cut(s)	210
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	8 cut(s)	41, 64, 76, 133, 148, 204, 212, 215
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	3 cut(s)	107, 176, 224
NspI	RCATGY	1 cut(s)	107
PagI	TCATGA	1 cut(s)	172
PciI	ACATGT	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	22
PscI	ACATGT	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	181
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	163
SetI	ASST	5 cut(s)	38, 44, 138, 159, 192
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	2 cut(s)	21, 208
StyI	CCWWGG	2 cut(s)	75, 132
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	15
TauI	GCSGC	1 cut(s)	23
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	151
XceI	RCATGY	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.