Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

13800954 .. 13801428

Gene Structure 475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGCAAGCTGATCACTTTGTTGACCAGTACATTTCCAACCTTACCACAAGCCCTCTTGACCTTTCCAAGCCACTATGGGAAGTCCATATCATCAATGTCAAAACCTTTGATGCAAAAGCGGTTGCAGTGACTCGGATTCACCACTCGATGGGGGATGGCGCTTCCCTCATGTCACTTCTACTAGCTTTTACACGAAAAACATCGGACCCTGATGCATTACCTACTCTTCCTGCTACCAAGAGGAAACTGGGGGATAAACTCGAAAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

6.9

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_cat	PF03007	10 - 80	7.8e-12	Wax ester synthase/diacylglycerol acyltransferase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	151
AciI	CCGC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	151
AluBI	AGCT	2 cut(s)	11, 188
AluI	AGCT	2 cut(s)	11, 188
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	208
BccI	CCATC	2 cut(s)	145, 152
BclI	TGATCA	1 cut(s)	13
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	260
BmsI	GCATC	2 cut(s)	103, 205
BmuI	ACTGGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	28, 255
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseNI	ACTGG	2 cut(s)	28, 255
BslI	CCNNNNNNNGG	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	28, 255
BssMI	GATC	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	163
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	4 cut(s)	11, 54, 73, 188
CviKI_1	RGCY	4 cut(s)	11, 54, 73, 188
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	220
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	79, 90, 173
FatI	CATG	1 cut(s)	171
FbaI	TGATCA	1 cut(s)	13
FokI	GGATG	1 cut(s)	170
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	165
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	133, 139
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	138, 208
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	116, 128, 218
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	41, 225, 236, 246
LweI	GCATC	2 cut(s)	103, 205
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	130, 174
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	3 cut(s)	66, 179, 237
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	1 cut(s)	274
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	2 cut(s)	130, 174
NsiI	ATGCAT	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	151
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	274
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	127
SetI	ASST	6 cut(s)	13, 45, 66, 110, 190, 226
SfaNI	GCATC	2 cut(s)	103, 205
SinI	GGWCC	1 cut(s)	208
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	185
TaqI	TCGA	2 cut(s)	149, 264
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	274
Tru9I	TTAA	1 cut(s)	274
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	130, 174
Tsp45I	GTSAC	2 cut(s)	130, 174
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.