Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

25294181 .. 25323903

Gene Structure 29723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG252600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGTTCGAGAGAGAAATCGATCAAAGGTTGGAGTGAACGAGGATAAAATATTAGGTGAAAAAAAGAGATGGGAACGAGTTTCAGTAAAAATTGAAGACCATGTCATTGTCCCAGACTTGGATTCGGAGATGAAGCATGCTGAACAGTTTGTTGACCAGTACATTTCCAACCTTACCACAAGCCCTCTTGACCTTTCCAAGCCACTATGGGAAGTCCATATCCTCAATGTCAAAACCTCTGATGCAGAAGTTGTTGCAGTGATTCGGATTCACCACTCGATGGGGGATGGGGCATCCCTCATGTCACTTCTACTAGCTTGTGCTCGAAAAACATCAGGGTCCCTGATGCATTGCCTACTGTTCCAACCAAGAGGAAACAGGAGGATAGTTCTTCAAGTGATTCGGGCGTGTTCTGACCATCAACGATGTTATATTGGGAGTGACACAAGCAGGTTTCTCGCGGTATTTGAACAGCAGATATGGTTGAAATGCTTGGCAATAAGCTTTGATTCAACTCTAGCTGTTACTGGTTCTGAAGATGGATCTGTCCATATTGTAAATATAACTACTGGAAAGCAAGCAACAATTATGGGTCCAGCCGACAACCCATTTATTGGAGGTGTTTTCCTTGTATCCATTCACTTCCCACCCAATTACCATTTCAAGCCACTTAAGGTATCCATTCACTTCCCACTCAATTACCATTTCAAGCCACTTAAGGCGGCGCATTTTCATTTTCAAAGCTATGCTTACAAAATGACTATCTGCCTAGGCGTCGACCCGGATGTACACCCTGATCCTGAAAAGTTGTTGGATGATTTAGAGGATTCACTCAAACTCATGCGCGATACAGTTGTTATTGCCAGGGAAGAAGCGTGTCTCAGGCTAAATGAGTTCATGAGATGTGGAACATACCATCCGGATTTTTTTTCCCTTCTTTTAAATATTAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

318

Amino Acids

36.04

Weight (kDa)

6.75

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_cat	PF03007	24 - 108	4.8e-08	Wax ester synthase/diacylglycerol acyltransferase catalytic domain
WS_DGAT_C	PF06974	240 - 281	3.4e-08	WS/DGAT C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	441
AccB7I	CCANNNNNTGG	2 cut(s)	280, 614
AccI	GTMKAC	1 cut(s)	777
AccII	CGCG	2 cut(s)	461, 846
AccIII	TCCGGA	1 cut(s)	919
AciI	CCGC	2 cut(s)	461, 722
AclWI	GGATC	2 cut(s)	550, 791
AcuI	CTGAAG	1 cut(s)	555
AcyI	GRCGYC	1 cut(s)	774
AfaI	GTAC	2 cut(s)	161, 789
AfiI	CCNNNNNNNGG	3 cut(s)	118, 280, 614
AflII	CTTAAG	2 cut(s)	671, 716
AgsI	TTSAA	8 cut(s)	95, 395, 470, 487, 513, 664, 709, 740
AjnI	CCWGG	1 cut(s)	863
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AloI	GAACNNNNNNTCC	2 cut(s)	901, 933
AluBI	AGCT	4 cut(s)	317, 504, 521, 744
AluI	AGCT	4 cut(s)	317, 504, 521, 744
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	884
AlwI	GGATC	2 cut(s)	550, 791
Aor13HI	TCCGGA	1 cut(s)	919
AspA2I	CCTAGG	1 cut(s)	769
AspLEI	GCGC	2 cut(s)	727, 846
AspS9I	GGNCC	2 cut(s)	339, 593
AsuC2I	CCSGG	1 cut(s)	782
AsuHPI	GGTGA	2 cut(s)	68, 263
AvaII	GGWCC	2 cut(s)	339, 593
AvrII	CCTAGG	1 cut(s)	769
BaeI	ACNNNNGTAYC	2 cut(s)	840, 873
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	6 cut(s)	63, 274, 281, 426, 533, 924
BcgI	CGANNNNNNTGC	2 cut(s)	439, 473
BciT130I	CCWGG	1 cut(s)	865
BciVI	GTATCC	2 cut(s)	643, 688
BcnI	CCSGG	1 cut(s)	782
BcoDI	GTCTC	1 cut(s)	884
BfaI	CTAG	3 cut(s)	314, 518, 770
BfrI	CTTAAG	2 cut(s)	671, 716
BfuAI	ACCTGC	1 cut(s)	441
BfuI	GTATCC	2 cut(s)	643, 688
BisI	GCNGC	1 cut(s)	723
BlnI	CCTAGG	1 cut(s)	769
BlsI	GCNGC	1 cut(s)	724
Bme1390I	CCNGG	2 cut(s)	782, 865
Bme18I	GGWCC	2 cut(s)	339, 593
BmgT120I	GGNCC	2 cut(s)	339, 593
BmiI	GGNNCC	3 cut(s)	340, 341, 594
BmrFI	CCNGG	2 cut(s)	782, 865
BmsI	GCATC	3 cut(s)	232, 302, 336
BpiI	GAAGAC	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	782
Bsa29I	ATCGAT	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	774
BsaJI	CCNNGG	2 cut(s)	769, 864
BsaWI	WCCGGW	1 cut(s)	919
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 280, 614
Bse1I	ACTGG	3 cut(s)	157, 532, 574
Bse3DI	GCAATG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	919
BseBI	CCWGG	1 cut(s)	865
BseCI	ATCGAT	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	769, 864
BseGI	GGATG	5 cut(s)	292, 293, 790, 820, 916
BseLI	CCNNNNNNNGG	3 cut(s)	118, 280, 614
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	895
BseNI	ACTGG	3 cut(s)	157, 532, 574
Bsh1236I	CGCG	2 cut(s)	461, 846
BshVI	ATCGAT	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	782, 920
BslFI	GGGAC	2 cut(s)	95, 325
BslI	CCNNNNNNNGG	3 cut(s)	118, 280, 614
BsmAI	GTCTC	1 cut(s)	884
BsmFI	GGGAC	2 cut(s)	95, 325
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp13I	TCCGGA	1 cut(s)	919
Bsp1407I	TGTACA	1 cut(s)	787
Bsp143I	GATC	3 cut(s)	20, 542, 796
BspACI	CCGC	2 cut(s)	461, 722
BspCNI	CTCAG	1 cut(s)	894
BspDI	ATCGAT	1 cut(s)	19
BspEI	TCCGGA	1 cut(s)	919
BspFNI	CGCG	2 cut(s)	461, 846
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	3 cut(s)	340, 341, 594
BspMI	ACCTGC	1 cut(s)	441
BspPI	GGATC	2 cut(s)	550, 791
BspTI	CTTAAG	2 cut(s)	671, 716
BsrDI	GCAATG	1 cut(s)	349
BsrGI	TGTACA	1 cut(s)	787
BsrI	ACTGG	3 cut(s)	157, 532, 574
BssECI	CCNNGG	2 cut(s)	769, 864
BssMI	GATC	3 cut(s)	20, 542, 796
BssNI	GRCGYC	1 cut(s)	774
BssT1I	CCWWGG	1 cut(s)	769
Bst2UI	CCWGG	1 cut(s)	865
Bst4CI	ACNGT	3 cut(s)	147, 360, 853
BstACI	GRCGYC	1 cut(s)	774
BstAFI	CTTAAG	2 cut(s)	671, 716
BstAUI	TGTACA	1 cut(s)	787
BstC8I	GCNNGC	2 cut(s)	138, 579
BstDEI	CTNAG	1 cut(s)	881
BstF5I	GGATG	5 cut(s)	292, 293, 790, 820, 916
BstFNI	CGCG	2 cut(s)	461, 846
BstHHI	GCGC	2 cut(s)	727, 846
BstKTI	GATC	3 cut(s)	23, 545, 799
BstMAI	GTCTC	1 cut(s)	884
BstMBI	GATC	3 cut(s)	20, 542, 796
BstNI	CCWGG	1 cut(s)	865
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	780, 863
BstUI	CGCG	2 cut(s)	461, 846
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	19
BsuI	GTATCC	2 cut(s)	643, 688
BsuTUI	ATCGAT	1 cut(s)	19
BtsCI	GGATG	5 cut(s)	292, 293, 790, 820, 916
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	138, 579
CciI	TCATGA	1 cut(s)	897
CfoI	GCGC	2 cut(s)	727, 846
Cfr13I	GGNCC	2 cut(s)	339, 593
ClaI	ATCGAT	1 cut(s)	19
CseI	GACGC	1 cut(s)	763
Csp6I	GTAC	2 cut(s)	160, 788
CviAII	CATG	5 cut(s)	101, 137, 301, 841, 898
CviQI	GTAC	2 cut(s)	160, 788
DdeI	CTNAG	1 cut(s)	881
DpnI	GATC	3 cut(s)	22, 544, 798
DpnII	GATC	3 cut(s)	20, 542, 796
DraI	TTTAAA	1 cut(s)	942
Eco130I	CCWWGG	1 cut(s)	769
Eco47I	GGWCC	2 cut(s)	339, 593
Eco57I	CTGAAG	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	863
EcoT14I	CCWWGG	1 cut(s)	769
EcoT22I	ATGCAT	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	769
FaeI	CATG	5 cut(s)	104, 140, 304, 844, 901
FalI	AAGNNNNNCTT	2 cut(s)	733, 765
FaqI	GGGAC	2 cut(s)	95, 325
FatI	CATG	5 cut(s)	100, 136, 300, 840, 897
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	1 cut(s)	723
FokI	GGATG	5 cut(s)	280, 299, 797, 827, 903
Fsp4HI	GCNGC	1 cut(s)	723
FspBI	CTAG	3 cut(s)	314, 518, 770
GlaI	GCGC	2 cut(s)	726, 845
GluI	GCNGC	1 cut(s)	723
HapII	CCGG	2 cut(s)	782, 920
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	2 cut(s)	727, 846
Hin1I	GRCGYC	1 cut(s)	774
Hin1II	CATG	5 cut(s)	104, 140, 304, 844, 901
Hin6I	GCGC	2 cut(s)	725, 844
HinP1I	GCGC	2 cut(s)	725, 844
HincII	GTYRAC	2 cut(s)	154, 778
HindII	GTYRAC	2 cut(s)	154, 778
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	6 cut(s)	122, 262, 268, 400, 509, 827
HpaII	CCGG	2 cut(s)	782, 920
HphI	GGTGA	2 cut(s)	68, 263
Hpy166II	GTNNAC	4 cut(s)	37, 154, 778, 790
Hpy188I	TCNGA	5 cut(s)	127, 241, 267, 415, 535
Hpy188III	TCNNGA	5 cut(s)	8, 188, 800, 898, 920
Hpy8I	GTNNAC	4 cut(s)	37, 154, 778, 790
Hpy99I	CGWCG	1 cut(s)	779
HpyAV	CCTTC	1 cut(s)	944
HpyCH4III	ACNGT	3 cut(s)	147, 360, 853
HpyCH4V	TGCA	3 cut(s)	245, 257, 349
HpyF3I	CTNAG	1 cut(s)	881
Hsp92I	GRCGYC	1 cut(s)	774
Hsp92II	CATG	5 cut(s)	104, 140, 304, 844, 901
HspAI	GCGC	2 cut(s)	725, 844
KflI	GGGWCCC	1 cut(s)	339
Kpn2I	TCCGGA	1 cut(s)	919
Kzo9I	GATC	3 cut(s)	20, 542, 796
LweI	GCATC	3 cut(s)	232, 302, 336
MaeI	CTAG	3 cut(s)	314, 518, 770
MaeIII	GTNAC	3 cut(s)	303, 440, 523
MalI	GATC	3 cut(s)	22, 544, 798
MboI	GATC	3 cut(s)	20, 542, 796
MboII	GAAGA	4 cut(s)	107, 383, 548, 881
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	4 cut(s)	90, 585, 652, 697
MmeI	TCCRAC	4 cut(s)	10, 192, 388, 792
MnlI	CCTC	9 cut(s)	34, 195, 233, 247, 308, 365, 375, 611, 817
Mph1103I	ATGCAT	1 cut(s)	351
MroI	TCCGGA	1 cut(s)	919
MseI	TTAA	3 cut(s)	672, 717, 941
MspCI	CTTAAG	2 cut(s)	671, 716
MspI	CCGG	2 cut(s)	782, 920
MspR9I	CCNGG	2 cut(s)	782, 865
MvaI	CCWGG	1 cut(s)	865
MvnI	CGCG	2 cut(s)	461, 846
NciI	CCSGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	20, 542, 796
NlaIII	CATG	5 cut(s)	104, 140, 304, 844, 901
NlaIV	GGNNCC	3 cut(s)	340, 341, 594
NmuCI	GTSAC	2 cut(s)	303, 440
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	897
PfeI	GAWTC	6 cut(s)	122, 262, 268, 400, 509, 827
PflFI	GACNNNGTC	1 cut(s)	101
PflMI	CCANNNNNTGG	2 cut(s)	280, 614
PkrI	GCNGC	1 cut(s)	724
PpuMI	RGGWCCY	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	863
PspGI	CCWGG	1 cut(s)	863
PspN4I	GGNNCC	3 cut(s)	340, 341, 594
PspPI	GGNCC	2 cut(s)	339, 593
PspPPI	RGGWCCY	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	542
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	161, 789
RsaNI	GTAC	2 cut(s)	160, 788
SalI	GTCGAC	1 cut(s)	776
SaqAI	TTAA	3 cut(s)	672, 717, 941
SatI	GCNGC	1 cut(s)	723
Sau3AI	GATC	3 cut(s)	20, 542, 796
Sau96I	GGNCC	2 cut(s)	339, 593
ScrFI	CCNGG	2 cut(s)	782, 865
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	3 cut(s)	232, 302, 336
SinI	GGWCC	2 cut(s)	339, 593
SmlI	CTYRAG	2 cut(s)	671, 716
SmoI	CTYRAG	2 cut(s)	671, 716
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	4 cut(s)	90, 585, 652, 697
SsiI	CCGC	2 cut(s)	461, 722
SspI	AATATT	2 cut(s)	51, 946
SspMI	CTAG	3 cut(s)	314, 518, 770
StyD4I	CCNGG	2 cut(s)	780, 863
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	3 cut(s)	147, 360, 853
TaqI	TCGA	5 cut(s)	7, 19, 278, 325, 777
TasI	AATT	4 cut(s)	90, 585, 652, 697
TatI	WGTACW	2 cut(s)	159, 787
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	6 cut(s)	122, 262, 268, 400, 509, 827
Tru1I	TTAA	3 cut(s)	672, 717, 941
Tru9I	TTAA	3 cut(s)	672, 717, 941
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	2 cut(s)	303, 440
Tsp45I	GTSAC	2 cut(s)	303, 440
TspDTI	ATGAA	3 cut(s)	146, 722, 886
TspRI	CASTG	1 cut(s)	264
Tth111I	GACNNNGTC	1 cut(s)	101
Van91I	CCANNNNNTGG	2 cut(s)	280, 614
Vha464I	CTTAAG	2 cut(s)	671, 716
VpaK11BI	GGWCC	2 cut(s)	339, 593
XceI	RCATGY	1 cut(s)	140
XmaJI	CCTAGG	1 cut(s)	769
XmiI	GTMKAC	1 cut(s)	777
XspI	CTAG	3 cut(s)	314, 518, 770
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.