Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

27392689 .. 27400897

Gene Structure 8209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG260200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCGGCACATTTGCATTTTCAAAGCTATGCTGACAAAATGACTATCTGCCTAGGCGTCGACCCGGATGTACACCCTGATCCTGAAAAGTTGTTGGATGATTTAGAGGATTCACTCAAACTCATGCGCGATGCAGTTGTTATTGCCAGGGAAGAAGCGTGTCTCAGGCTAAATGAGTTCATGTGTGGAACATACCATCCAGATTTTTTTTCCCTTCTTTTGAATATTAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

78

Amino Acids

8.88

Weight (kDa)

4.6

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_C	PF06974	3 - 42	3.2e-10	WS/DGAT C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	23, 223
AjnI	CCWGG	1 cut(s)	146
AloI	GAACNNNNNNTCC	2 cut(s)	181, 213
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	74
AspA2I	CCTAGG	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	65
AvrII	CCTAGG	1 cut(s)	52
BccI	CCATC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	6
BlnI	CCTAGG	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	65, 148
BmrFI	CCNGG	2 cut(s)	65, 148
BmsI	GCATC	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	52, 147
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	52, 147
BseGI	GGATG	3 cut(s)	73, 103, 196
BseMII	CTCAG	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	52, 147
BssMI	GATC	1 cut(s)	79
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	57
BstAUI	TGTACA	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	73, 103, 196
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	63, 146
BstUI	CGCG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	3 cut(s)	73, 103, 196
CfoI	GCGC	1 cut(s)	129
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	2 cut(s)	124, 181
CviJI	RGCY	2 cut(s)	27, 169
CviKI_1	RGCY	2 cut(s)	27, 169
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	2 cut(s)	127, 184
FaiI	YATR	4 cut(s)	30, 125, 182, 193
FatI	CATG	2 cut(s)	123, 180
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	80, 110, 183
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	127, 184
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	61, 73
Hpy188III	TCNNGA	2 cut(s)	83, 200
Hpy8I	GTNNAC	2 cut(s)	61, 73
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	16, 134
HpyF3I	CTNAG	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	127, 184
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	78, 90, 96, 133, 151, 160, 213
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	53
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	1 cut(s)	100
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	65, 148
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	129
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	127, 184
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SalI	GTCGAC	1 cut(s)	59
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	65, 148
SetI	ASST	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	121
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	63, 146
StyI	CCWWGG	1 cut(s)	52
TaqI	TCGA	1 cut(s)	60
TatI	WGTACW	1 cut(s)	70
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	169
XmaJI	CCTAGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.