Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Forward (+)

66288259 .. 66289543

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60399

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGAACACAAGCAGCTTGCTACTGAGCTTTGAGGCAGAGATGGAAGATCGTCTAAGCCCGGCAGCGCGTCTGTTTCACTCACCGAAGTTCAGCTGCTATATTGTCATAAGAATGGGGTGCAGCATCAGGATCAATCCTGAAGTAATCAGCGCCGGCTTGAAGGAAATCTTGTATAAGCATCCTCGCTTCTCTAGCAAAAATGGTAAACATATTTCTATTTGTGTTTCTTTTGTGATCAAATGCACCTTTTGTTCATTGTTCTATACATGTTCTTACAAGGTGGTACTACTGCTACTAGGAGCCTTTTTATTTCCAAACTTTATCAGAACCCCACATTTTAAACATCGCATGGTTGAAGCCATGGATGTAAAGAGAAGAAAAGATGGAAAATACAAGAGACCTACATGTAATCAAAAACAAAAAATTGGACAATGTCATGATGAATACTTATTCTCTAATAAAGATCCAAAGCCTAATTCTAAGCTCGGCAGCAGTTTGTTTCGTTCACCGAAATTCAGCTGTTACATTGTTTTAACAATAGGCAGCAAGACAAGAATCAATCTGGAAGTTGTTAAAGCCGGCTTGAAGCAAAACTTTCCTGATCATCCTTGCTTCTCTAGCATAATGGTCTACAATAGTTGCTTTTCTCTTGCTTGGTTAAATGCGTTTCTTTTTCTTTTTCCTGGATTTGCTTTCAGTACATGGATCTTAGTTTATGCCATTTCAATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

245

Amino Acids

28.11

Weight (kDa)

9.58

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	633
AccII	CGCG	1 cut(s)	70
AclWI	GGATC	3 cut(s)	140, 461, 716
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	288, 703
AflIII	ACRYGT	2 cut(s)	269, 407
AgsI	TTSAA	4 cut(s)	163, 359, 589, 729
AjnI	CCWGG	1 cut(s)	685
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
AluBI	AGCT	5 cut(s)	18, 30, 96, 487, 522
AluI	AGCT	5 cut(s)	18, 30, 96, 487, 522
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	3 cut(s)	140, 461, 716
ApeKI	GCWGC	6 cut(s)	15, 65, 96, 123, 492, 546
ApoI	RAATTY	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	70, 155
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	75, 501
BbvI	GCAGC	6 cut(s)	27, 77, 83, 135, 504, 558
BccI	CCATC	2 cut(s)	37, 380
BciT130I	CCWGG	1 cut(s)	687
BclI	TGATCA	2 cut(s)	237, 604
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	3 cut(s)	195, 299, 621
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	6 cut(s)	16, 66, 97, 124, 493, 547
BlsI	GCNGC	6 cut(s)	17, 67, 98, 125, 494, 548
Bme1390I	CCNGG	2 cut(s)	62, 687
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	62, 687
BmsI	GCATC	2 cut(s)	135, 190
BpuMI	CCSGG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	363
Bse118I	RCCGGY	2 cut(s)	155, 581
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	3 cut(s)	181, 373, 607
BseMII	CTCAG	1 cut(s)	17
BseXI	GCAGC	6 cut(s)	27, 77, 83, 135, 504, 558
BsgI	GTGCAG	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	62, 156, 582
BsmAI	GTCTC	1 cut(s)	394
Bso31I	GGTCTC	1 cut(s)	394
Bsp143I	GATC	6 cut(s)	49, 132, 237, 466, 604, 708
Bsp19I	CCATGG	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	3 cut(s)	140, 461, 716
BspTNI	GGTCTC	1 cut(s)	394
BsrFI	RCCGGY	2 cut(s)	155, 581
BssAI	RCCGGY	2 cut(s)	155, 581
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	6 cut(s)	49, 132, 237, 466, 604, 708
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	687
BstC8I	GCNNGC	3 cut(s)	20, 157, 583
BstDEI	CTNAG	4 cut(s)	26, 56, 483, 712
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	181, 373, 607
BstFNI	CGCG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	70, 155
BstKTI	GATC	6 cut(s)	52, 135, 240, 469, 607, 711
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	6 cut(s)	49, 132, 237, 466, 604, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 621
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	2 cut(s)	273, 411
BstSCI	CCNGG	2 cut(s)	60, 685
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	6 cut(s)	27, 77, 83, 135, 504, 558
BstX2I	RGATCY	2 cut(s)	466, 708
BstYI	RGATCY	2 cut(s)	466, 708
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	181, 373, 607
Cac8I	GCNNGC	3 cut(s)	20, 157, 583
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	2 cut(s)	70, 155
Cfr10I	RCCGGY	2 cut(s)	155, 581
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	287, 702
CviAII	CATG	6 cut(s)	270, 352, 364, 408, 440, 705
CviQI	GTAC	2 cut(s)	287, 702
DdeI	CTNAG	4 cut(s)	26, 56, 483, 712
DpnI	GATC	6 cut(s)	51, 134, 239, 468, 606, 710
DpnII	GATC	6 cut(s)	49, 132, 237, 466, 604, 708
DraI	TTTAAA	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	6 cut(s)	273, 355, 367, 411, 443, 708
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 581, 613
FatI	CATG	6 cut(s)	269, 351, 363, 407, 439, 704
FbaI	TGATCA	2 cut(s)	237, 604
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	6 cut(s)	16, 66, 97, 124, 493, 547
FokI	GGATG	3 cut(s)	168, 380, 594
Fsp4HI	GCNGC	6 cut(s)	16, 66, 97, 124, 493, 547
FspBI	CTAG	3 cut(s)	195, 299, 621
GlaI	GCGC	2 cut(s)	69, 154
GluI	GCNGC	6 cut(s)	16, 66, 97, 124, 493, 547
HaeII	RGCGCY	1 cut(s)	156
HapII	CCGG	3 cut(s)	62, 156, 582
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	70, 155
Hin1II	CATG	6 cut(s)	273, 355, 367, 411, 443, 708
Hin6I	GCGC	2 cut(s)	68, 153
HinP1I	GCGC	2 cut(s)	68, 153
HinfI	GANTC	1 cut(s)	558
HpaII	CCGG	3 cut(s)	62, 156, 582
HphI	GGTGA	2 cut(s)	75, 501
Hpy166II	GTNNAC	3 cut(s)	209, 509, 634
Hpy188I	TCNGA	1 cut(s)	329
Hpy188III	TCNNGA	5 cut(s)	130, 140, 440, 566, 602
Hpy8I	GTNNAC	3 cut(s)	209, 509, 634
HpyAV	CCTTC	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	123, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 621
HpyF3I	CTNAG	4 cut(s)	26, 56, 483, 712
Hsp92II	CATG	6 cut(s)	273, 355, 367, 411, 443, 708
HspAI	GCGC	2 cut(s)	68, 153
KroI	GCCGGC	2 cut(s)	155, 581
KroNI	GCCGGC	2 cut(s)	157, 583
Ksp22I	TGATCA	2 cut(s)	237, 604
Kzo9I	GATC	6 cut(s)	49, 132, 237, 466, 604, 708
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	9 cut(s)	75, 115, 153, 169, 551, 595, 615, 672, 699
Lsp1109I	GCAGC	6 cut(s)	27, 77, 83, 135, 504, 558
LweI	GCATC	2 cut(s)	135, 190
MaeI	CTAG	3 cut(s)	195, 299, 621
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	6 cut(s)	51, 134, 239, 468, 606, 710
MboI	GATC	6 cut(s)	49, 132, 237, 466, 604, 708
MboII	GAAGA	2 cut(s)	59, 390
MflI	RGATCY	2 cut(s)	466, 708
MluCI	AATT	3 cut(s)	426, 478, 515
MnlI	CCTC	2 cut(s)	28, 195
MroNI	GCCGGC	2 cut(s)	155, 581
MseI	TTAA	4 cut(s)	342, 536, 576, 662
MslI	CAYNNNNRTG	2 cut(s)	113, 728
MspA1I	CMGCKG	2 cut(s)	96, 522
MspI	CCGG	3 cut(s)	62, 156, 582
MspR9I	CCNGG	2 cut(s)	62, 687
MvaI	CCWGG	1 cut(s)	687
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	195, 621
NaeI	GCCGGC	2 cut(s)	157, 583
NciI	CCSGG	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	6 cut(s)	49, 132, 237, 466, 604, 708
NgoMIV	GCCGGC	2 cut(s)	155, 581
NlaIII	CATG	6 cut(s)	273, 355, 367, 411, 443, 708
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	1 cut(s)	468
NspI	RCATGY	2 cut(s)	273, 411
PagI	TCATGA	1 cut(s)	439
PciI	ACATGT	2 cut(s)	269, 407
PdiI	GCCGGC	2 cut(s)	157, 583
PfeI	GAWTC	1 cut(s)	558
PflFI	GACNNNGTC	1 cut(s)	435
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	6 cut(s)	17, 67, 98, 125, 494, 548
PscI	ACATGT	2 cut(s)	269, 407
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	466, 708
PsyI	GACNNNGTC	1 cut(s)	435
PvuII	CAGCTG	2 cut(s)	96, 522
RsaI	GTAC	2 cut(s)	288, 703
RsaNI	GTAC	2 cut(s)	287, 702
RseI	CAYNNNNRTG	2 cut(s)	113, 728
SaqAI	TTAA	4 cut(s)	342, 536, 576, 662
SatI	GCNGC	6 cut(s)	16, 66, 97, 124, 493, 547
Sau3AI	GATC	6 cut(s)	49, 132, 237, 466, 604, 708
ScrFI	CCNGG	2 cut(s)	62, 687
SetI	ASST	8 cut(s)	20, 32, 98, 251, 285, 406, 489, 524
SfaNI	GCATC	2 cut(s)	135, 190
SmiMI	CAYNNNNRTG	2 cut(s)	113, 728
Sse9I	AATT	3 cut(s)	426, 478, 515
SspMI	CTAG	3 cut(s)	195, 299, 621
StyD4I	CCNGG	2 cut(s)	60, 685
StyI	CCWWGG	1 cut(s)	363
TasI	AATT	3 cut(s)	426, 478, 515
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	1 cut(s)	558
Tru1I	TTAA	4 cut(s)	342, 536, 576, 662
Tru9I	TTAA	4 cut(s)	342, 536, 576, 662
TseI	GCWGC	6 cut(s)	15, 65, 96, 123, 492, 546
TspDTI	ATGAA	2 cut(s)	246, 459
Tth111I	GACNNNGTC	1 cut(s)	435
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	2 cut(s)	273, 411
XmiI	GTMKAC	1 cut(s)	633
XspI	CTAG	3 cut(s)	195, 299, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.