Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001637.1

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Forward (+)

68069 .. 68773

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001637.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgggaatcctcaatgtcgacaaaacctctgatgcagaagctgttgcagtgattcggattcactacttgatggcggctggcgcatccctcatgtcacatctactagcttgtaccacaaaaacattggacctggatgcattgcctagtgttccaaccaagaggaaacatgaggggaacactcttgttgatcttgtgctattttttgccacaattctggttttgaaagacaccaagacgcctattaaaggtccacctggggttgagcttactgccaagcggttcttccatcgaacgatattaacaaagacgttaggggttgatctaagcatggtttcagcttcagaagtaactgaaaccataacaattggtcctgccattataaagtacgtagttgaggagatccatctacttatggggattgtttcaaacatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

144

Amino Acids

15.55

Weight (kDa)

6.96

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	74, 277
AclWI	GGATC	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	2 cut(s)	112, 386
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	223, 426
AjnI	CCWGG	2 cut(s)	129, 253
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	41, 107, 265, 338
AluI	AGCT	4 cut(s)	41, 107, 265, 338
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	3 cut(s)	127, 248, 368
AvaII	GGWCC	3 cut(s)	127, 248, 368
BccI	CCATC	3 cut(s)	64, 294, 411
BciT130I	CCWGG	2 cut(s)	131, 255
BfaI	CTAG	2 cut(s)	104, 144
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	131, 255
Bme18I	GGWCC	3 cut(s)	127, 248, 368
BmgT120I	GGNCC	3 cut(s)	127, 248, 368
BmrFI	CCNGG	2 cut(s)	131, 255
BmsI	GCATC	3 cut(s)	22, 92, 124
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	131, 255
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	2 cut(s)	83, 139
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	187, 319, 399
BspACI	CCGC	2 cut(s)	74, 277
BspPI	GGATC	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	3 cut(s)	187, 319, 399
BssNI	GRCGYC	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	131, 255
BstACI	GRCGYC	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	323
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	83, 139
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	3 cut(s)	190, 322, 402
BstMBI	GATC	3 cut(s)	187, 319, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	131, 255
BstSCI	CCNGG	2 cut(s)	129, 253
BstSNI	TACGTA	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	399
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	83, 139
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	3 cut(s)	127, 248, 368
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	111, 385
CviAII	CATG	3 cut(s)	91, 167, 328
CviJI	RGCY	5 cut(s)	41, 77, 107, 265, 338
CviKI_1	RGCY	5 cut(s)	41, 77, 107, 265, 338
CviQI	GTAC	2 cut(s)	111, 385
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	3 cut(s)	189, 321, 401
DpnII	GATC	3 cut(s)	187, 319, 399
Eco105I	TACGTA	1 cut(s)	388
Eco47I	GGWCC	3 cut(s)	127, 248, 368
Eco57I	CTGAAG	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoRII	CCWGG	2 cut(s)	129, 253
EcoT22I	ATGCAT	1 cut(s)	139
FaeI	CATG	3 cut(s)	94, 170, 331
FaiI	YATR	6 cut(s)	92, 168, 329, 359, 380, 413
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	3 cut(s)	90, 166, 327
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	70, 146
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	104, 144
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	1 cut(s)	75
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	94, 170, 331
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	6, 52, 58
Hpy166II	GTNNAC	2 cut(s)	19, 251
Hpy188I	TCNGA	4 cut(s)	31, 57, 343, 434
Hpy8I	GTNNAC	2 cut(s)	19, 251
HpyCH4IV	ACGT	2 cut(s)	308, 387
HpyCH4V	TGCA	3 cut(s)	35, 47, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	308, 387
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	3 cut(s)	94, 170, 331
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	187, 319, 399
LpnPI	CCDG	7 cut(s)	63, 116, 143, 200, 240, 267, 384
LweI	GCATC	3 cut(s)	22, 92, 124
MaeI	CTAG	2 cut(s)	104, 144
MaeII	ACGT	2 cut(s)	308, 387
MaeIII	GTNAC	2 cut(s)	93, 346
MalI	GATC	3 cut(s)	189, 321, 401
MboI	GATC	3 cut(s)	187, 319, 399
MboII	GAAGA	1 cut(s)	274
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	399
MluCI	AATT	2 cut(s)	210, 363
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	6 cut(s)	20, 37, 98, 153, 163, 388
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	2 cut(s)	243, 299
MspR9I	CCNGG	2 cut(s)	131, 255
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	131, 255
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	3 cut(s)	187, 319, 399
NlaIII	CATG	3 cut(s)	94, 170, 331
NmuCI	GTSAC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	6, 52, 58
PkrI	GCNGC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	388
PsiI	TTATAA	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	129, 253
PspGI	CCWGG	2 cut(s)	129, 253
PspPI	GGNCC	3 cut(s)	127, 248, 368
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	2 cut(s)	112, 386
RsaNI	GTAC	2 cut(s)	111, 385
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	243, 299
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	187, 319, 399
Sau96I	GGNCC	3 cut(s)	127, 248, 368
ScrFI	CCNGG	2 cut(s)	131, 255
SfaNI	GCATC	3 cut(s)	22, 92, 124
SinI	GGWCC	3 cut(s)	127, 248, 368
SnaBI	TACGTA	1 cut(s)	388
Sse9I	AATT	2 cut(s)	210, 363
SsiI	CCGC	2 cut(s)	74, 277
SspMI	CTAG	2 cut(s)	104, 144
StyD4I	CCNGG	2 cut(s)	129, 253
TaiI	ACGT	2 cut(s)	311, 390
TaqI	TCGA	2 cut(s)	18, 289
TasI	AATT	2 cut(s)	210, 363
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	3 cut(s)	6, 52, 58
Tru1I	TTAA	2 cut(s)	243, 299
Tru9I	TTAA	2 cut(s)	243, 299
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	3 cut(s)	127, 248, 368
XagI	CCTNNNNNAGG	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	104, 144
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.