Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002892.1

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

40412 .. 45143

Gene Structure 4732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002892.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgcaccggtgccgttctgttcgtcttctcctcgcccaccttctcctggaatcagttcacccattcgtggagcctggagagagaatcgaagcccgaaatcttcgggctttctgcattttccggcgactattgaggaagcatgagatgagaaactttgttgactcagcaaactctacttgttggtataattggttttcaatttcatggaattttgatcgaattgatattttggatggtttcagacatcgtagagggtgctgttctggcactattcaccgccgactaacatattacgccgccttcaagcacctcttccggcgaccccatcaataccttgccgccaagacaatagtggcacaccaccgatgccgagtccgcaatcccataatgatcaaaggatccccgcgtaccaatctacacccgagaaacgaacatgaaacagggcagaaacaccgttgcaccgccttgacccttcgatcttcaagtcgcaccactaaagtaaaatcgacccgagcagtaggttattcacccaccctgcacgatcagcgctctcgtcgttgccgctgtggcttaccgctcagcaccagggtgaacgaggataaaatattaggtgaaaaaaagagatgggaacgagtttcagtaaaaattgaagaccatgtcattggcccagacttggattcggagatgaagcatgctgaacagtttgttgaccagtacatttccaaccttcccacaagccctcttgacctttccaagccactatgggaagtccatatcctcaatgtcaaaacctctgatgcagaagctgttgcagtgattcggattcaccactcgatggaggatggggcatccctcatgttacttctactagcttgtgctctaaaaacatcagggtccctgatgcattgcctactgttccaaccaagaggaaacaggaggatagttcttcaagtgattcgggcgtgttctagtggttcttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

327

Amino Acids

37.91

Weight (kDa)

10.11

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	835
AccBSI	CCGCTC	1 cut(s)	577
AccII	CGCG	1 cut(s)	406
AciI	CCGC	8 cut(s)	277, 297, 339, 376, 404, 462, 562, 575
AclWI	GGATC	2 cut(s)	393, 406
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	2 cut(s)	409, 716
AfeI	AGCGCT	1 cut(s)	548
AfiI	CCNNNNNNNGG	4 cut(s)	46, 67, 673, 835
AgeI	ACCGGT	1 cut(s)	6
AgsI	TTSAA	5 cut(s)	198, 304, 483, 650, 950
AjnI	CCWGG	3 cut(s)	45, 73, 584
AleI	CACNNNNGTG	1 cut(s)	587
AluBI	AGCT	2 cut(s)	806, 872
AluI	AGCT	2 cut(s)	806, 872
Alw21I	GWGCWC	1 cut(s)	880
AlwI	GGATC	2 cut(s)	393, 406
AlwNI	CAGNNNCTG	1 cut(s)	806
Ama87I	CYCGRG	2 cut(s)	421, 510
Aor51HI	AGCGCT	1 cut(s)	548
AoxI	GGCC	1 cut(s)	664
ApoI	RAATTY	1 cut(s)	208
AsiGI	ACCGGT	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	2 cut(s)	665, 894
AsuHPI	GGTGA	6 cut(s)	50, 266, 519, 601, 623, 818
AvaI	CYCGRG	2 cut(s)	421, 510
AvaII	GGWCC	1 cut(s)	894
BamHI	GGATCC	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	17, 657
Bbv12I	GWGCWC	1 cut(s)	880
BccI	CCATC	5 cut(s)	227, 333, 618, 829, 836
BciT130I	CCWGG	3 cut(s)	47, 75, 586
BclI	TGATCA	1 cut(s)	390
BfaI	CTAG	2 cut(s)	869, 969
BfoI	RGCGCY	1 cut(s)	550
BglI	GCCNNNNNGGC	1 cut(s)	567
BisI	GCNGC	3 cut(s)	297, 339, 562
BlpI	GCTNAGC	1 cut(s)	578
BlsI	GCNGC	3 cut(s)	298, 340, 563
Bme1390I	CCNGG	3 cut(s)	47, 75, 586
Bme18I	GGWCC	1 cut(s)	894
BmeT110I	CYCGRG	2 cut(s)	421, 510
BmgT120I	GGNCC	2 cut(s)	665, 894
BmiI	GGNNCC	5 cut(s)	11, 72, 400, 895, 896
BmrFI	CCNGG	3 cut(s)	47, 75, 586
BmsI	GCATC	4 cut(s)	356, 787, 857, 891
BpiI	GAAGAC	2 cut(s)	17, 657
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	585
BsaWI	WCCGGW	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 67, 673, 835
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	712
Bse3DI	GCAATG	1 cut(s)	904
BseBI	CCWGG	3 cut(s)	47, 75, 586
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	3 cut(s)	238, 847, 848
BseLI	CCNNNNNNNGG	4 cut(s)	46, 67, 673, 835
BseMI	GCAATG	1 cut(s)	904
BseMII	CTCAG	2 cut(s)	177, 592
BseNI	ACTGG	1 cut(s)	712
BseRI	GAGGAG	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	666
BshNI	GGYRCC	1 cut(s)	9
BshTI	ACCGGT	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	880
BsiHKCI	CYCGRG	2 cut(s)	421, 510
BsiSI	CCGG	3 cut(s)	7, 121, 316
BslFI	GGGAC	1 cut(s)	880
BslI	CCNNNNNNNGG	4 cut(s)	46, 67, 673, 835
BsmFI	GGGAC	1 cut(s)	880
BsnI	GGCC	1 cut(s)	666
BsoBI	CYCGRG	2 cut(s)	421, 510
Bsp1286I	GDGCHC	1 cut(s)	880
Bsp143I	GATC	5 cut(s)	214, 390, 398, 476, 541
Bsp1720I	GCTNAGC	1 cut(s)	578
BspACI	CCGC	8 cut(s)	277, 297, 339, 376, 404, 462, 562, 575
BspANI	GGCC	1 cut(s)	666
BspCNI	CTCAG	2 cut(s)	176, 591
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	5 cut(s)	11, 72, 400, 895, 896
BspPI	GGATC	2 cut(s)	393, 406
BspT107I	GGYRCC	1 cut(s)	9
BsrBI	CCGCTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	904
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	5 cut(s)	214, 390, 398, 476, 541
Bst2UI	CCWGG	3 cut(s)	47, 75, 586
Bst4CI	ACNGT	3 cut(s)	455, 702, 915
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	2 cut(s)	163, 578
BstF5I	GGATG	3 cut(s)	238, 847, 848
BstFNI	CGCG	1 cut(s)	406
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	5 cut(s)	217, 393, 401, 479, 544
BstMBI	GATC	5 cut(s)	214, 390, 398, 476, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	264, 375, 544, 567
BstNI	CCWGG	3 cut(s)	47, 75, 586
BstNSI	RCATGY	1 cut(s)	695
BstSCI	CCNGG	3 cut(s)	45, 73, 584
BstUI	CGCG	1 cut(s)	406
BstV2I	GAAGAC	2 cut(s)	17, 657
BstX2I	RGATCY	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	238, 847, 848
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	1 cut(s)	819
Cac8I	GCNNGC	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	806
CfoI	GCGC	1 cut(s)	549
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	665, 894
Csp6I	GTAC	2 cut(s)	408, 715
CspAI	ACCGGT	1 cut(s)	6
CviAII	CATG	6 cut(s)	140, 204, 434, 656, 692, 856
CviJI	RGCY	9 cut(s)	73, 92, 107, 570, 666, 738, 757, 806, 872
CviKI_1	RGCY	9 cut(s)	73, 92, 107, 570, 666, 738, 757, 806, 872
CviQI	GTAC	2 cut(s)	408, 715
DdeI	CTNAG	2 cut(s)	163, 578
DpnI	GATC	5 cut(s)	216, 392, 400, 478, 543
DpnII	GATC	5 cut(s)	214, 390, 398, 476, 541
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	894
Eco47III	AGCGCT	1 cut(s)	548
Eco88I	CYCGRG	2 cut(s)	421, 510
EcoO109I	RGGNCCY	1 cut(s)	894
EcoRII	CCWGG	3 cut(s)	45, 73, 584
EcoT22I	ATGCAT	1 cut(s)	906
FaeI	CATG	6 cut(s)	143, 207, 437, 659, 695, 859
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	880
FatI	CATG	6 cut(s)	139, 203, 433, 655, 691, 855
FauI	CCCGC	1 cut(s)	411
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	297, 339, 562
FokI	GGATG	3 cut(s)	245, 835, 854
Fsp4HI	GCNGC	3 cut(s)	297, 339, 562
FspBI	CTAG	2 cut(s)	869, 969
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	3 cut(s)	297, 339, 562
GsuI	CTGGAG	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	550
HaeIII	GGCC	1 cut(s)	666
HapII	CCGG	3 cut(s)	7, 121, 316
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	6 cut(s)	143, 207, 437, 659, 695, 859
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HincII	GTYRAC	2 cut(s)	160, 709
HindII	GTYRAC	2 cut(s)	160, 709
HinfI	GANTC	8 cut(s)	50, 84, 161, 372, 677, 817, 823, 955
HpaII	CCGG	3 cut(s)	7, 121, 316
HphI	GGTGA	6 cut(s)	50, 266, 519, 601, 623, 818
Hpy166II	GTNNAC	4 cut(s)	58, 160, 592, 709
Hpy188I	TCNGA	4 cut(s)	242, 682, 796, 822
Hpy188III	TCNNGA	1 cut(s)	743
Hpy8I	GTNNAC	4 cut(s)	58, 160, 592, 709
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	4 cut(s)	50, 310, 482, 737
HpyCH4III	ACNGT	3 cut(s)	455, 702, 915
HpyCH4V	TGCA	7 cut(s)	4, 114, 459, 538, 800, 812, 904
HpyF10VI	GCNNNNNNNGC	4 cut(s)	264, 375, 544, 567
HpyF3I	CTNAG	2 cut(s)	163, 578
Hsp92II	CATG	6 cut(s)	143, 207, 437, 659, 695, 859
HspAI	GCGC	1 cut(s)	547
KflI	GGGWCCC	1 cut(s)	894
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	5 cut(s)	214, 390, 398, 476, 541
LmnI	GCTCC	1 cut(s)	70
LweI	GCATC	4 cut(s)	356, 787, 857, 891
MaeI	CTAG	2 cut(s)	869, 969
MaeIII	GTNAC	1 cut(s)	858
MalI	GATC	5 cut(s)	216, 392, 400, 478, 543
MbiI	CCGCTC	1 cut(s)	577
MboI	GATC	5 cut(s)	214, 390, 398, 476, 541
MboII	GAAGA	6 cut(s)	17, 92, 304, 471, 662, 938
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	880
MluCI	AATT	5 cut(s)	187, 198, 208, 219, 645
MlyI	GAGTC	2 cut(s)	155, 381
MmeI	TCCRAC	2 cut(s)	747, 943
Mph1103I	ATGCAT	1 cut(s)	906
MroXI	GAANNNNTTC	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	3 cut(s)	7, 121, 316
MspR9I	CCNGG	3 cut(s)	47, 75, 586
MvaI	CCWGG	3 cut(s)	47, 75, 586
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	4 cut(s)	264, 375, 544, 567
NdeII	GATC	5 cut(s)	214, 390, 398, 476, 541
NlaIII	CATG	6 cut(s)	143, 207, 437, 659, 695, 859
NlaIV	GGNNCC	5 cut(s)	11, 72, 400, 895, 896
NmeAIII	GCCGAG	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	906
NspI	RCATGY	1 cut(s)	695
OliI	CACNNNNGTG	1 cut(s)	587
PaeI	GCATGC	1 cut(s)	695
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	6 cut(s)	50, 84, 677, 817, 823, 955
PflFI	GACNNNGTC	1 cut(s)	656
PflMI	CCANNNNNTGG	1 cut(s)	835
PfoI	TCCNGGA	1 cut(s)	45
PinAI	ACCGGT	1 cut(s)	6
PkrI	GCNGC	3 cut(s)	298, 340, 563
PleI	GAGTC	2 cut(s)	155, 380
PpsI	GAGTC	2 cut(s)	155, 380
PpuMI	RGGWCCY	1 cut(s)	894
Psp5II	RGGWCCY	1 cut(s)	894
Psp6I	CCWGG	3 cut(s)	45, 73, 584
PspGI	CCWGG	3 cut(s)	45, 73, 584
PspN4I	GGNNCC	5 cut(s)	11, 72, 400, 895, 896
PspPI	GGNCC	2 cut(s)	665, 894
PspPPI	RGGWCCY	1 cut(s)	894
PstNI	CAGNNNCTG	1 cut(s)	806
PsuI	RGATCY	1 cut(s)	398
PsyI	GACNNNGTC	1 cut(s)	656
RsaI	GTAC	2 cut(s)	409, 716
RsaNI	GTAC	2 cut(s)	408, 715
RseI	CAYNNNNRTG	1 cut(s)	587
SatI	GCNGC	3 cut(s)	297, 339, 562
Sau3AI	GATC	5 cut(s)	214, 390, 398, 476, 541
Sau96I	GGNCC	2 cut(s)	665, 894
SchI	GAGTC	2 cut(s)	155, 381
ScrFI	CCNGG	3 cut(s)	47, 75, 586
SduI	GDGCHC	1 cut(s)	880
SfaNI	GCATC	4 cut(s)	356, 787, 857, 891
SgrAI	CRCCGGYG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	894
SmiMI	CAYNNNNRTG	1 cut(s)	587
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	5 cut(s)	187, 198, 208, 219, 645
SsiI	CCGC	8 cut(s)	277, 297, 339, 376, 404, 462, 562, 575
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	2 cut(s)	869, 969
StyD4I	CCNGG	3 cut(s)	45, 73, 584
TaaI	ACNGT	3 cut(s)	455, 702, 915
TaqI	TCGA	5 cut(s)	87, 217, 475, 506, 833
TasI	AATT	5 cut(s)	187, 198, 208, 219, 645
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	3 cut(s)	299, 341, 564
TfiI	GAWTC	6 cut(s)	50, 84, 677, 817, 823, 955
TscAI	CASTG	1 cut(s)	819
TspDTI	ATGAA	3 cut(s)	192, 450, 701
TspRI	CASTG	1 cut(s)	819
Tth111I	GACNNNGTC	1 cut(s)	656
Van91I	CCANNNNNTGG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	894
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	2 cut(s)	869, 969
Zsp2I	ATGCAT	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.