Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Forward (+)

52695062 .. 52696443

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG403800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGAACACAAGCAGCTTGCTACTGAGCTTTGAGGCAGAGATGGAAGATCACCAACCAAGTCTAAGCCCGGCAGCGCGTCTGTTTCACTCACCAAAGTTCAGCTGCTATATTGTCATAAGAATGGGGTGCAGCATCAGGATCAATCCTGAAGTAATCAGCGCCGGCTTGAAGGAAACCTTGTATAAGCATCCTCGCTTCTCTAGCAAAATGGATAAAAAATTATGTGGTAAAAAGATATGGGTACAAGTTTCAATCAATATGGAGGACCATGTTATTGTTCCAAACATGAATTCAGATATGGAGGATGCAGACCAGTTTGTTAGAGACTACATTTCGCGCCTTACTACAACCCCTCTTGACCTTTCCAAGCTACTATGGGAATCCTCAATGTCGACAAAACCTCTGATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

138

Amino Acids

15.81

Weight (kDa)

6.41

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	2 cut(s)	79, 340
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	172, 255
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	4 cut(s)	18, 30, 105, 373
AluI	AGCT	4 cut(s)	18, 30, 105, 373
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	15, 74, 105, 132
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	3 cut(s)	79, 164, 342
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	44, 84
AvaII	GGWCC	1 cut(s)	268
BbvI	GCAGC	4 cut(s)	27, 86, 92, 144
BccI	CCATC	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	4 cut(s)	16, 75, 106, 133
BlsI	GCNGC	4 cut(s)	17, 76, 107, 134
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	4 cut(s)	144, 199, 298, 399
BpuMI	CCSGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	190, 313
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	4 cut(s)	27, 86, 92, 144
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	79, 340
BsiSI	CCGG	2 cut(s)	71, 165
BsmAI	GTCTC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	49, 141
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	2 cut(s)	79, 340
BspPI	GGATC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	164
BssMI	GATC	2 cut(s)	49, 141
BstC8I	GCNNGC	2 cut(s)	20, 166
BstDEI	CTNAG	2 cut(s)	26, 65
BstF5I	GGATG	2 cut(s)	190, 313
BstFNI	CGCG	2 cut(s)	79, 340
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	3 cut(s)	79, 164, 342
BstKTI	GATC	2 cut(s)	52, 144
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	2 cut(s)	49, 141
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	2 cut(s)	79, 340
BstV1I	GCAGC	4 cut(s)	27, 86, 92, 144
BtsCI	GGATG	2 cut(s)	190, 313
Cac8I	GCNNGC	2 cut(s)	20, 166
CfoI	GCGC	3 cut(s)	79, 164, 342
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	2 cut(s)	272, 289
CviJI	RGCY	6 cut(s)	18, 30, 69, 105, 168, 373
CviKI_1	RGCY	6 cut(s)	18, 30, 69, 105, 168, 373
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	2 cut(s)	26, 65
DpnI	GATC	2 cut(s)	51, 143
DpnII	GATC	2 cut(s)	49, 141
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	292
FaeI	CATG	2 cut(s)	275, 292
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	2 cut(s)	271, 288
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	4 cut(s)	16, 75, 106, 133
FokI	GGATG	2 cut(s)	177, 320
Fsp4HI	GCNGC	4 cut(s)	16, 75, 106, 133
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	3 cut(s)	78, 163, 341
GluI	GCNGC	4 cut(s)	16, 75, 106, 133
HaeII	RGCGCY	1 cut(s)	165
HapII	CCGG	2 cut(s)	71, 165
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	3 cut(s)	79, 164, 342
Hin1II	CATG	2 cut(s)	275, 292
Hin6I	GCGC	3 cut(s)	77, 162, 340
HinP1I	GCGC	3 cut(s)	77, 162, 340
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	2 cut(s)	71, 165
HphI	GGTGA	2 cut(s)	44, 84
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	2 cut(s)	298, 408
Hpy188III	TCNNGA	3 cut(s)	139, 149, 359
Hpy8I	GTNNAC	1 cut(s)	396
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	132, 311, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	2 cut(s)	26, 65
Hsp92II	CATG	2 cut(s)	275, 292
HspAI	GCGC	3 cut(s)	77, 162, 340
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	49, 141
LpnPI	CCDG	5 cut(s)	84, 124, 162, 178, 329
Lsp1109I	GCAGC	4 cut(s)	27, 86, 92, 144
LweI	GCATC	4 cut(s)	144, 199, 298, 399
MaeI	CTAG	1 cut(s)	204
MalI	GATC	2 cut(s)	51, 143
MboI	GATC	2 cut(s)	49, 141
MboII	GAAGA	1 cut(s)	59
MluCI	AATT	2 cut(s)	221, 292
MnlI	CCTC	7 cut(s)	28, 204, 259, 298, 366, 397, 414
MroNI	GCCGGC	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	2 cut(s)	71, 165
MspR9I	CCNGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	79, 340
MwoI	GCNNNNNNNGC	1 cut(s)	204
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	2 cut(s)	49, 141
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	275, 292
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	17, 76, 107, 134
PspPI	GGNCC	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	394
SatI	GCNGC	4 cut(s)	16, 75, 106, 133
Sau3AI	GATC	2 cut(s)	49, 141
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	7 cut(s)	20, 32, 107, 182, 366, 375, 406
SfaNI	GCATC	4 cut(s)	144, 199, 298, 399
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	221, 292
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	69
TaqI	TCGA	1 cut(s)	395
TasI	AATT	2 cut(s)	221, 292
TfiI	GAWTC	1 cut(s)	383
TseI	GCWGC	4 cut(s)	15, 74, 105, 132
TspDTI	ATGAA	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.