Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

24962120 .. 24978072

Gene Structure 15953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G021480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGATGTGAACGAGGATAAAATATTAGGTGAAAAAAAGAGATGGGAACGAGTTTCAGTAAAAATTGAAGACCATGTCATTGTCCCAGACTTGGATTCGGAGATGAAGCATGCTGAACAGTTTGTTGACCAGTACATTTCCAACCTTACCACAAGCCCTCTTGACCTTTCCAAGCCACTATGGGAAGTCCATATCCTCAATGTCAAAACCTCTGATGCAGAAGCTGTTGCAGTGATTCGGATTCACCACTCGATGGGGGATGGGGCATCCCTCATGTCACTTCTACTAGCTTGTGCTCGAAAAACATCAGGGAAACAGGAGGATAGTTCTTCAAGTGATTCGGGCGTGTTCTGGTGGTTCTTATTGACTATTTGGTCAGCAATCGCATTGATAAGAAACACTCTTGTTGATCTTGTGCTGTTCATAGCCACTGCTCTGGTTCTTAAAGACACAAAGACTCCTATGAAAGGTCCACCTGGGGTGGATTTGGATCACATCAAGCAAGTGAAGAATGCTTTGAACATGACCATCAACGATGTTATATTGGGAGTGACACAAGCAGGTTTCTCGCGGTATTTGAACAGCAGATATGATATTTCATTGCAGTCATTTTCTCTAACCTCTAACAAAAATGAGAAGGATGACGGAGCAAAGCAGAAGGGACACAATAATCTTCCTAAAAGCATCCGCCTTAGAGCAAATGTTCTCATGAATTTACGACCAGCTGTTGGGATCCCGAAGTCCAAGACCAAGTGGGGTAATAAAATTGGATATGTCCTTCTCCCCTTCACCATTGCTCTACAAGATGACCCTTTGGACTATGTTCGTGGAGCTAAGTCGCTCATTGATCGAAAAAAAAAAAACACTCATATGAAGCTTTTTGGACATACTTATCCTAATGGTCCACTTGAAGAAATTACTTATTACGACCATCAAGTTAAATATACTGCTTCTAATGTTTACGGACACCCACAGGCGGCGCATTTGCATTTTCAAAGCTATGCTGACAAAATGACTATCTGCCTAGGCGTCGACCCGGATGTACACCCTGATCCTGAAAAGTTGTTGGATGATTTTGAGGATTCACTCAAACTCATGCGCGATGCAGTTGTTATTACCAAGGAAGAAGCGTGTCTCAGGCTAAATGAGTTCATGAGATGTGGAACATACCATCCGGATTTTTTTTCCCTTCTTTTAAATATTAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

403

Amino Acids

45.42

Weight (kDa)

6.74

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_cat	PF03007	20 - 102	3.4e-08	Wax ester synthase/diacylglycerol acyltransferase catalytic domain
WS_DGAT_C	PF06974	252 - 290	3.5e-08	WS/DGAT C-terminal domain
WS_DGAT_C	PF06974	301 - 366	2.4e-17	WS/DGAT C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	551
AccB7I	CCANNNNNTGG	2 cut(s)	253, 728
AccI	GTMKAC	1 cut(s)	1032
AccII	CGCG	2 cut(s)	571, 1101
AccIII	TCCGGA	1 cut(s)	1174
AciI	CCGC	3 cut(s)	571, 688, 977
AclWI	GGATC	4 cut(s)	498, 727, 740, 1046
AcsI	RAATTY	1 cut(s)	712
AcyI	GRCGYC	1 cut(s)	1029
AfaI	GTAC	2 cut(s)	134, 1044
AfiI	CCNNNNNNNGG	5 cut(s)	91, 253, 467, 728, 976
AgsI	TTSAA	6 cut(s)	68, 333, 520, 580, 911, 995
AjnI	CCWGG	1 cut(s)	475
AloI	GAACNNNNNNTCC	2 cut(s)	1156, 1188
AluBI	AGCT	6 cut(s)	224, 290, 725, 833, 877, 999
AluI	AGCT	6 cut(s)	224, 290, 725, 833, 877, 999
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	1139
AlwI	GGATC	4 cut(s)	498, 727, 740, 1046
AlwNI	CAGNNNCTG	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	1174
ApoI	RAATTY	1 cut(s)	712
AspA2I	CCTAGG	1 cut(s)	1024
AspLEI	GCGC	2 cut(s)	982, 1101
AspS9I	GGNCC	2 cut(s)	470, 902
AsuC2I	CCSGG	1 cut(s)	1037
AsuHPI	GGTGA	3 cut(s)	41, 236, 781
AvaII	GGWCC	2 cut(s)	470, 902
AvrII	CCTAGG	1 cut(s)	1024
BamHI	GGATCC	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	6 cut(s)	36, 247, 254, 536, 939, 1179
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	1037
BcoDI	GTCTC	1 cut(s)	1139
BfaI	CTAG	2 cut(s)	287, 1025
BfuAI	ACCTGC	1 cut(s)	551
BisI	GCNGC	1 cut(s)	978
BlnI	CCTAGG	1 cut(s)	1024
BlsI	GCNGC	1 cut(s)	979
Bme1390I	CCNGG	2 cut(s)	477, 1037
Bme18I	GGWCC	2 cut(s)	470, 902
BmgT120I	GGNCC	2 cut(s)	470, 902
BmiI	GGNNCC	1 cut(s)	734
BmrFI	CCNGG	2 cut(s)	477, 1037
BmsI	GCATC	4 cut(s)	205, 275, 693, 1093
BpiI	GAAGAC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	1037
BsaBI	GATNNNNATC	1 cut(s)	489
BsaHI	GRCGYC	1 cut(s)	1029
BsaJI	CCNNGG	3 cut(s)	476, 1024, 1119
BsaWI	WCCGGW	1 cut(s)	1174
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 253, 467, 728, 976
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	2 cut(s)	599, 792
Bse8I	GATNNNNATC	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	1174
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	476, 1024, 1119
BseGI	GGATG	8 cut(s)	10, 265, 266, 646, 684, 1045, 1075, 1171
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	5 cut(s)	91, 253, 467, 728, 976
BseMI	GCAATG	2 cut(s)	599, 792
BseMII	CTCAG	1 cut(s)	1150
BseNI	ACTGG	1 cut(s)	130
Bsh1236I	CGCG	2 cut(s)	571, 1101
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	1037, 1175
BslFI	GGGAC	2 cut(s)	68, 675
BslI	CCNNNNNNNGG	5 cut(s)	91, 253, 467, 728, 976
BsmAI	GTCTC	1 cut(s)	1139
BsmFI	GGGAC	2 cut(s)	68, 675
BsmI	GAATGC	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	1174
Bsp1407I	TGTACA	1 cut(s)	1042
Bsp143I	GATC	5 cut(s)	409, 490, 732, 847, 1051
BspACI	CCGC	3 cut(s)	571, 688, 977
BspCNI	CTCAG	1 cut(s)	1149
BspEI	TCCGGA	1 cut(s)	1174
BspFNI	CGCG	2 cut(s)	571, 1101
BspHI	TCATGA	2 cut(s)	708, 1152
BspLI	GGNNCC	1 cut(s)	734
BspMI	ACCTGC	1 cut(s)	551
BspPI	GGATC	4 cut(s)	498, 727, 740, 1046
BsrDI	GCAATG	2 cut(s)	599, 792
BsrGI	TGTACA	1 cut(s)	1042
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	476, 1024, 1119
BssMI	GATC	5 cut(s)	409, 490, 732, 847, 1051
BssNI	GRCGYC	1 cut(s)	1029
BssT1I	CCWWGG	2 cut(s)	1024, 1119
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	1029
BstAUI	TGTACA	1 cut(s)	1042
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	692, 834, 1136
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	8 cut(s)	10, 265, 266, 646, 684, 1045, 1075, 1171
BstFNI	CGCG	2 cut(s)	571, 1101
BstHHI	GCGC	2 cut(s)	982, 1101
BstKTI	GATC	5 cut(s)	412, 493, 735, 850, 1054
BstMAI	GTCTC	1 cut(s)	1139
BstMBI	GATC	5 cut(s)	409, 490, 732, 847, 1051
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	2 cut(s)	475, 1035
BstUI	CGCG	2 cut(s)	571, 1101
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	732
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	732
BtgZI	GCGATG	1 cut(s)	1116
BtsCI	GGATG	8 cut(s)	10, 265, 266, 646, 684, 1045, 1075, 1171
BtsI	GCAGTG	2 cut(s)	237, 429
BtsIMutI	CAGTG	2 cut(s)	237, 429
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	224
CciI	TCATGA	2 cut(s)	708, 1152
CfoI	GCGC	2 cut(s)	982, 1101
Cfr13I	GGNCC	2 cut(s)	470, 902
CseI	GACGC	1 cut(s)	1018
Csp6I	GTAC	2 cut(s)	133, 1043
CviAII	CATG	7 cut(s)	74, 110, 274, 523, 709, 1096, 1153
CviQI	GTAC	2 cut(s)	133, 1043
DdeI	CTNAG	3 cut(s)	692, 834, 1136
DpnI	GATC	5 cut(s)	411, 492, 734, 849, 1053
DpnII	GATC	5 cut(s)	409, 490, 732, 847, 1051
DraI	TTTAAA	1 cut(s)	1197
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
EciI	GGCGGA	1 cut(s)	677
Eco130I	CCWWGG	2 cut(s)	1024, 1119
Eco47I	GGWCC	2 cut(s)	470, 902
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	2 cut(s)	1024, 1119
ErhI	CCWWGG	2 cut(s)	1024, 1119
FaeI	CATG	7 cut(s)	77, 113, 277, 526, 712, 1099, 1156
FaqI	GGGAC	2 cut(s)	68, 675
FatI	CATG	7 cut(s)	73, 109, 273, 522, 708, 1095, 1152
FauNDI	CATATG	1 cut(s)	870
FblI	GTMKAC	1 cut(s)	1032
Fnu4HI	GCNGC	1 cut(s)	978
FokI	GGATG	8 cut(s)	17, 253, 272, 653, 671, 1052, 1082, 1158
Fsp4HI	GCNGC	1 cut(s)	978
FspBI	CTAG	2 cut(s)	287, 1025
GlaI	GCGC	2 cut(s)	981, 1100
GluI	GCNGC	1 cut(s)	978
HapII	CCGG	2 cut(s)	1037, 1175
HgaI	GACGC	1 cut(s)	1018
HhaI	GCGC	2 cut(s)	982, 1101
Hin1I	GRCGYC	1 cut(s)	1029
Hin1II	CATG	7 cut(s)	77, 113, 277, 526, 712, 1099, 1156
Hin6I	GCGC	2 cut(s)	980, 1099
HinP1I	GCGC	2 cut(s)	980, 1099
HincII	GTYRAC	2 cut(s)	127, 1033
HindII	GTYRAC	2 cut(s)	127, 1033
HindIII	AAGCTT	1 cut(s)	875
HinfI	GANTC	6 cut(s)	95, 235, 241, 338, 457, 1082
HpaII	CCGG	2 cut(s)	1037, 1175
HphI	GGTGA	3 cut(s)	41, 236, 781
Hpy166II	GTNNAC	7 cut(s)	10, 127, 473, 905, 961, 1033, 1045
Hpy188I	TCNGA	3 cut(s)	100, 214, 240
Hpy188III	TCNNGA	6 cut(s)	161, 709, 736, 1055, 1153, 1175
Hpy8I	GTNNAC	7 cut(s)	10, 127, 473, 905, 961, 1033, 1045
Hpy99I	CGWCG	1 cut(s)	1034
HpyAV	CCTTC	5 cut(s)	631, 652, 788, 796, 1199
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	218, 230, 604, 988, 1106
HpyF3I	CTNAG	3 cut(s)	692, 834, 1136
Hsp92I	GRCGYC	1 cut(s)	1029
Hsp92II	CATG	7 cut(s)	77, 113, 277, 526, 712, 1099, 1156
HspAI	GCGC	2 cut(s)	980, 1099
Kpn2I	TCCGGA	1 cut(s)	1174
Kzo9I	GATC	5 cut(s)	409, 490, 732, 847, 1051
LmnI	GCTCC	2 cut(s)	647, 830
LweI	GCATC	4 cut(s)	205, 275, 693, 1093
MaeI	CTAG	2 cut(s)	287, 1025
MaeIII	GTNAC	2 cut(s)	276, 550
MalI	GATC	5 cut(s)	411, 492, 734, 849, 1053
MboI	GATC	5 cut(s)	409, 490, 732, 847, 1051
MboII	GAAGA	6 cut(s)	80, 321, 520, 665, 923, 1136
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	4 cut(s)	63, 712, 765, 915
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	165, 1047
MnlI	CCTC	8 cut(s)	7, 168, 206, 220, 281, 313, 631, 1072
MroI	TCCGGA	1 cut(s)	1174
MseI	TTAA	3 cut(s)	444, 939, 1196
MslI	CAYNNNNRTG	1 cut(s)	869
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	2 cut(s)	1037, 1175
MspR9I	CCNGG	2 cut(s)	477, 1037
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	2 cut(s)	571, 1101
NciI	CCSGG	1 cut(s)	1037
NdeI	CATATG	1 cut(s)	870
NdeII	GATC	5 cut(s)	409, 490, 732, 847, 1051
NlaIII	CATG	7 cut(s)	77, 113, 277, 526, 712, 1099, 1156
NlaIV	GGNNCC	1 cut(s)	734
NmuCI	GTSAC	2 cut(s)	276, 550
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PagI	TCATGA	2 cut(s)	708, 1152
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	5 cut(s)	95, 235, 241, 338, 1082
PflFI	GACNNNGTC	1 cut(s)	74
PflMI	CCANNNNNTGG	2 cut(s)	253, 728
PkrI	GCNGC	1 cut(s)	979
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	734
PspPI	GGNCC	2 cut(s)	470, 902
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	732
PsyI	GACNNNGTC	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	2 cut(s)	134, 1044
RsaNI	GTAC	2 cut(s)	133, 1043
RseI	CAYNNNNRTG	1 cut(s)	869
SalI	GTCGAC	1 cut(s)	1031
SaqAI	TTAA	3 cut(s)	444, 939, 1196
SatI	GCNGC	1 cut(s)	978
Sau3AI	GATC	5 cut(s)	409, 490, 732, 847, 1051
Sau96I	GGNCC	2 cut(s)	470, 902
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	477, 1037
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	4 cut(s)	205, 275, 693, 1093
SinI	GGWCC	2 cut(s)	470, 902
SmiMI	CAYNNNNRTG	1 cut(s)	869
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	4 cut(s)	63, 712, 765, 915
SsiI	CCGC	3 cut(s)	571, 688, 977
SspI	AATATT	2 cut(s)	24, 1201
SspMI	CTAG	2 cut(s)	287, 1025
StyD4I	CCNGG	2 cut(s)	475, 1035
StyI	CCWWGG	2 cut(s)	1024, 1119
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	4 cut(s)	251, 298, 850, 1032
TasI	AATT	4 cut(s)	63, 712, 765, 915
TatI	WGTACW	2 cut(s)	132, 1042
TauI	GCSGC	1 cut(s)	980
TfiI	GAWTC	5 cut(s)	95, 235, 241, 338, 1082
Tru1I	TTAA	3 cut(s)	444, 939, 1196
Tru9I	TTAA	3 cut(s)	444, 939, 1196
TscAI	CASTG	2 cut(s)	237, 436
TseFI	GTSAC	2 cut(s)	276, 550
Tsp45I	GTSAC	2 cut(s)	276, 550
TspDTI	ATGAA	7 cut(s)	119, 412, 479, 588, 725, 887, 1141
TspGWI	ACGGA	2 cut(s)	660, 978
TspRI	CASTG	2 cut(s)	237, 436
Tth111I	GACNNNGTC	1 cut(s)	74
Van91I	CCANNNNNTGG	2 cut(s)	253, 728
VpaK11BI	GGWCC	2 cut(s)	470, 902
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	1 cut(s)	712
XceI	RCATGY	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	1024
XmiI	GTMKAC	1 cut(s)	1032
XspI	CTAG	2 cut(s)	287, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.