Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002962.1

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

49214 .. 49935

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002962.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgatggctaagaagtccaagaccaagtggggtaataggattggatatgtcctggtacccttcaccattgctctacaagatgaccctttggattatgttcgtggagccaagttgcttatggatcggaaaaagcactcatttgaagcatttttcacatacttaagtgccaatcttttaaccaaactaatcggagcaaagggagctggagcagtagcacacagagttctttgtaattccacattagcattcacaaacttgattggtcccctcgaagaaattagctattacgggcatccaattacttacattgctcctaatgtttacggccatccacatgcattgcacatgcattttcaaagctatgttgacaaaatgactattagcttagcctttgaccccgatttaatccctgatcctgaaaagttgttggatgatttagaagaatcactcaaactcattcgcgatgctgttgtcgaaaaggagctcaacattgccgaggaaggaagaagcagctgtgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

173

Amino Acids

19.38

Weight (kDa)

6.37

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	55
AccII	CGCG	1 cut(s)	462
AclWI	GGATC	2 cut(s)	129, 407
AcoI	YGGCCR	1 cut(s)	325
AfaI	GTAC	1 cut(s)	57
AflII	CTTAAG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	143, 356
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	6 cut(s)	203, 282, 360, 384, 484, 513
AluI	AGCT	6 cut(s)	203, 282, 360, 384, 484, 513
Alw21I	GWGCWC	1 cut(s)	486
AlwI	GGATC	2 cut(s)	129, 407
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	510
Asp718I	GGTACC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	486
BccI	CCATC	1 cut(s)	336
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	160
BisI	GCNGC	1 cut(s)	511
BlpI	GCTNAGC	1 cut(s)	385
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	57, 106, 265
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	301, 454
BpmI	CTGGAG	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	495
Bse3DI	GCAATG	4 cut(s)	66, 306, 338, 489
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	3 cut(s)	292, 328, 436
BseMI	GCAATG	4 cut(s)	66, 306, 338, 489
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	2 cut(s)	121, 412
Bsp1720I	GCTNAGC	1 cut(s)	385
Bsp68I	TCGCGA	1 cut(s)	462
BspANI	GGCC	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	57, 106, 265
BspPI	GGATC	2 cut(s)	129, 407
BspT107I	GGYRCC	1 cut(s)	55
BspTI	CTTAAG	1 cut(s)	160
BsrDI	GCAATG	4 cut(s)	66, 306, 338, 489
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	121, 412
Bst2UI	CCWGG	1 cut(s)	53
BstAFI	CTTAAG	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	9, 385
BstF5I	GGATG	3 cut(s)	292, 328, 436
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	2 cut(s)	124, 415
BstMBI	GATC	2 cut(s)	121, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	338, 349
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	327
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	292, 328, 436
BtuMI	TCGCGA	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	2 cut(s)	335, 346
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	9, 385
DpnI	GATC	2 cut(s)	123, 414
DpnII	GATC	2 cut(s)	121, 412
EaeI	YGGCCR	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	484
EcoICRI	GAGCTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	51
EcoT22I	ATGCAT	2 cut(s)	340, 351
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	2 cut(s)	338, 349
FaiI	YATR	7 cut(s)	48, 96, 119, 157, 336, 347, 363
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	2 cut(s)	334, 345
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	3 cut(s)	279, 315, 443
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	1 cut(s)	511
GluI	GCNGC	1 cut(s)	511
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	338, 349
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	1 cut(s)	443
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	322, 367
Hpy188I	TCNGA	2 cut(s)	126, 191
Hpy188III	TCNNGA	2 cut(s)	416, 461
Hpy8I	GTNNAC	2 cut(s)	322, 367
HpyAV	CCTTC	2 cut(s)	70, 494
HpyCH4V	TGCA	3 cut(s)	338, 343, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	9, 385
Hsp92II	CATG	2 cut(s)	338, 349
KpnI	GGTACC	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	121, 412
LmnI	GCTCC	6 cut(s)	104, 191, 200, 206, 316, 481
LpnPI	CCDG	5 cut(s)	38, 65, 189, 423, 429
LweI	GCATC	2 cut(s)	301, 454
MalI	GATC	2 cut(s)	123, 414
MboI	GATC	2 cut(s)	121, 412
MboII	GAAGA	3 cut(s)	284, 452, 516
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	3 cut(s)	232, 276, 297
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	2 cut(s)	278, 490
Mph1103I	ATGCAT	2 cut(s)	340, 351
MseI	TTAA	3 cut(s)	161, 176, 404
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	513
MspCI	CTTAAG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	121, 412
NlaIII	CATG	2 cut(s)	338, 349
NlaIV	GGNNCC	3 cut(s)	57, 106, 265
NmeAIII	GCCGAG	1 cut(s)	520
NruI	TCGCGA	1 cut(s)	462
NsiI	ATGCAT	2 cut(s)	340, 351
NspI	RCATGY	2 cut(s)	338, 349
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	57, 106, 265
PspPI	GGNCC	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	513
RruI	TCGCGA	1 cut(s)	462
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	161, 176, 404
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	2 cut(s)	121, 412
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	6 cut(s)	205, 284, 362, 386, 486, 515
SfaNI	GCATC	2 cut(s)	301, 454
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	3 cut(s)	232, 276, 297
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	51
TaqI	TCGA	2 cut(s)	270, 474
TasI	AATT	3 cut(s)	232, 276, 297
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	3 cut(s)	161, 176, 404
Tru9I	TTAA	3 cut(s)	161, 176, 404
TseI	GCWGC	1 cut(s)	510
Vha464I	CTTAAG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	263
XceI	RCATGY	2 cut(s)	338, 349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
Zsp2I	ATGCAT	2 cut(s)	340, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.