Rw1G039120

O-acyltransferase (WSD1-like)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
66702829 .. 66706534
3706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039120.1

Sequence Viewer

Length: 1512 bp
ATGGAGAACACAAGCAGCTTGCTACTGAACTTTGAGGCACAGATGGAAGATCAGCAACCAAGTCTAAGCCCGGCAGCGCGTCTGTTTCACTCACCAAAGTTCAGCTGCTATATTGTCATAAGAATGGGGTGCAGCATCAGGATCAATCCTGAAGTAATCAGCGCCGGCTTGAAGGAAACCTTGTATAAGCATCCTCGCTTCTCTAGCAAAATGGTGAAGGATAGAAACTTATGTGGTAAAAAGAGATGGATACAAGTTCCAATAAATATGGAGGACCATGTTATTGTTCCAAACATGGATTCAGATATGGAGGATGCTGACCAATTTGTTAGAGACTACATTTCCCACCTTACCAAAAGCCCTCTTGACCTTTCCAAGCCACTATGGGAAGTCCATATCCTCAATGTCAAAACCTCTGATGCAGAAGCTGTTGCAGTGATTCGGATTCACCACTCGATTGGGGATGGCGCGTCCCTCATGTCACTTCTACTAGCTTGTACCAGAAAAACATCGGACCCGGATGCATTGCCTAGTGTTCCAACCAAGAGGAAACACGAGGGTAGTTCTTTAAGTGAATCGGGCGTGTTCTGGTTGTTGTTATTGGCTATCTGGTCAGCAGTAACATTGATAGGGAACACTCTTGTTGATATTGTGCTGTTTGTAGCCACTATTCTGGTTTTGAAAGACACAAAGACTCCTATTAAAGGTCCACCTGGGGTTGAGCTTACTGCCAAGCGCTTCTTGCATCGAACAGTTAGTTTTGATCACATCAAACAAGTGAAGAATGCTATGAACATGACCATCAATGATGTTGTATTAGGAGTGACACAGGCGGGTCTATCGCAATATTTGAACTGCAGATATGCAGGTGAAAATGAGAAAGATGAGGGAGCAAAGAAGAAGGGACATAATCTACCAAAAAGTATCCGCCTTAGAGCAAATATTCTCGTTAATTTACGACCAGCTGTTGGGATCCAGGAACTGGCCGATATGATGGCTAAGAAGTCCAAGACCAAGTGGGGTAATAGGATTGGATATGTCCTGGTACCCTTCACCATTGCTCTACAAGATGACCCTTTGGATTATGTTCGTGGAGCCAAGTTGATTATGGATCGGAAAAAGCACTCATTTGAAGCATTTTGCACATACTTAAGTGCCAATCTTTTAACCAAACTAATCGGAGCAAAGGGAGCTGGAGCAGTAGCACACAGAGTTCTTTGTAATTCCACATTAGCATTCACAAACTTGATTGGTCCCCTCGAAGAAATTAGCTATTACGGGCATCCAATTACTTACATTGCTCCTAATGTTTACGGCCATCCACATGCATTGCACATGCATTTTCAAAGCTATGTTGACAAAATGACTATTAGCTTAGCCTTTGACCCCGATTTAATCCCTGATCCTGAAAAGTTGTTGGATGATTTAGAAGAATCACTCAAACTCATTCGCGATGCTGTTGTCGAAAAGGAGCTCAACATTGCCAAGGAAGGAAGAAGCAGCTGTGTTTAG

Protein Analysis

503

Amino Acids

56.03

Weight (kDa)

8.58

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_cat PF03007 58 - 272 4e-17 Wax ester synthase/diacylglycerol acyltransferase catalytic domain
WS_DGAT_C PF06974 340 - 483 1.4e-50 WS/DGAT C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 857
Acc36I ACCTGC 1 cut(s) 857
Acc65I GGTACC 1 cut(s) 1045
AccB1I GGYRCC 1 cut(s) 1045
AccB7I CCANNNNNTGG 2 cut(s) 968, 982
AccII CGCG 3 cut(s) 79, 470, 1452
AciI CCGC 2 cut(s) 833, 928
AclWI GGATC 5 cut(s) 149, 967, 980, 1119, 1397
AcoI YGGCCR 2 cut(s) 984, 1315
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 499, 1047
AfeI AGCGCT 1 cut(s) 737
AfiI CCNNNNNNNGG 3 cut(s) 704, 968, 982
AflII CTTAAG 1 cut(s) 1150
AgsI TTSAA 5 cut(s) 172, 682, 853, 1133, 1346
AjnI CCWGG 3 cut(s) 712, 975, 1041
AjuI GAANNNNNNNTTGG 2 cut(s) 283, 315
Alw21I GWGCWC 1 cut(s) 1476
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 5 cut(s) 149, 967, 980, 1119, 1397
AlwNI CAGNNNCTG 2 cut(s) 428, 982
Aor51HI AGCGCT 1 cut(s) 737
AoxI GGCC 2 cut(s) 984, 1315
ApeKI GCWGC 5 cut(s) 15, 74, 105, 132, 1500
Asp718I GGTACC 1 cut(s) 1045
AspLEI GCGC 4 cut(s) 79, 164, 470, 738
AspS9I GGNCC 4 cut(s) 274, 514, 707, 1253
AsuC2I CCSGG 2 cut(s) 71, 518
AsuHPI GGTGA 5 cut(s) 84, 226, 440, 881, 1045
AvaII GGWCC 4 cut(s) 274, 514, 707, 1253
BamHI GGATCC 1 cut(s) 972
BanI GGYRCC 1 cut(s) 1045
BanII GRGCYC 1 cut(s) 1476
BauI CACGAG 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 1476
BbvI GCAGC 4 cut(s) 27, 86, 92, 144
BccI CCATC 6 cut(s) 37, 240, 458, 809, 988, 1326
BceAI ACGGC 1 cut(s) 1330
BciT130I CCWGG 3 cut(s) 714, 977, 1043
BciVI GTATCC 2 cut(s) 243, 935
BclI TGATCA 1 cut(s) 763
BcnI CCSGG 2 cut(s) 71, 518
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 3 cut(s) 204, 491, 531
BfmI CTRYAG 1 cut(s) 856
BfoI RGCGCY 2 cut(s) 165, 739
BfrI CTTAAG 1 cut(s) 1150
BfuAI ACCTGC 1 cut(s) 857
BfuI GTATCC 2 cut(s) 243, 935
BisI GCNGC 5 cut(s) 16, 75, 106, 133, 1501
BlpI GCTNAGC 1 cut(s) 1375
BlsI GCNGC 5 cut(s) 17, 76, 107, 134, 1502
Bme1390I CCNGG 5 cut(s) 71, 518, 714, 977, 1043
Bme18I GGWCC 4 cut(s) 274, 514, 707, 1253
BmgT120I GGNCC 4 cut(s) 274, 514, 707, 1253
BmiI GGNNCC 5 cut(s) 516, 974, 1047, 1096, 1255
BmrFI CCNGG 5 cut(s) 71, 518, 714, 977, 1043
BmsI GCATC 8 cut(s) 144, 199, 304, 409, 511, 754, 1291, 1444
BpmI CTGGAG 1 cut(s) 1215
Bpu1102I GCTNAGC 1 cut(s) 1375
BpuMI CCSGG 2 cut(s) 71, 518
BsaJI CCNNGG 2 cut(s) 713, 1485
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 3 cut(s) 704, 968, 982
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 987
Bse3DI GCAATG 5 cut(s) 524, 1056, 1296, 1328, 1479
BseBI CCWGG 3 cut(s) 714, 977, 1043
BseDI CCNNGG 2 cut(s) 713, 1485
BseGI GGATG 7 cut(s) 190, 319, 469, 526, 1282, 1318, 1426
BseLI CCNNNNNNNGG 3 cut(s) 704, 968, 982
BseMI GCAATG 5 cut(s) 524, 1056, 1296, 1328, 1479
BseNI ACTGG 1 cut(s) 987
BseXI GCAGC 4 cut(s) 27, 86, 92, 144
BsgI GTGCAG 1 cut(s) 151
Bsh1236I CGCG 3 cut(s) 79, 470, 1452
BshFI GGCC 2 cut(s) 986, 1317
BshNI GGYRCC 1 cut(s) 1045
BsiHKAI GWGCWC 1 cut(s) 1476
BsiSI CCGG 3 cut(s) 71, 165, 518
BslFI GGGAC 3 cut(s) 457, 918, 1239
BslI CCNNNNNNNGG 3 cut(s) 704, 968, 982
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 3 cut(s) 457, 918, 1239
BsmI GAATGC 2 cut(s) 790, 1235
BsnI GGCC 2 cut(s) 986, 1317
Bsp1286I GDGCHC 1 cut(s) 1476
Bsp143I GATC 6 cut(s) 49, 141, 763, 972, 1111, 1402
Bsp1720I GCTNAGC 1 cut(s) 1375
Bsp68I TCGCGA 1 cut(s) 1452
BspACI CCGC 2 cut(s) 833, 928
BspANI GGCC 2 cut(s) 986, 1317
BspFNI CGCG 3 cut(s) 79, 470, 1452
BspLI GGNNCC 5 cut(s) 516, 974, 1047, 1096, 1255
BspMAI CTGCAG 1 cut(s) 860
BspMI ACCTGC 1 cut(s) 857
BspPI GGATC 5 cut(s) 149, 967, 980, 1119, 1397
BspT107I GGYRCC 1 cut(s) 1045
BspTI CTTAAG 1 cut(s) 1150
BsrDI GCAATG 5 cut(s) 524, 1056, 1296, 1328, 1479
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 987
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 713, 1485
BssMI GATC 6 cut(s) 49, 141, 763, 972, 1111, 1402
BssSI CACGAG 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 1485
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 3 cut(s) 714, 977, 1043
Bst4CI ACNGT 1 cut(s) 754
BstAFI CTTAAG 1 cut(s) 1150
BstC8I GCNNGC 2 cut(s) 20, 166
BstDEI CTNAG 4 cut(s) 65, 932, 999, 1375
BstENI CCTNNNNNAGG 1 cut(s) 702
BstF5I GGATG 7 cut(s) 190, 319, 469, 526, 1282, 1318, 1426
BstFNI CGCG 3 cut(s) 79, 470, 1452
BstH2I RGCGCY 2 cut(s) 165, 739
BstHHI GCGC 4 cut(s) 79, 164, 470, 738
BstKTI GATC 6 cut(s) 52, 144, 766, 975, 1114, 1405
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 6 cut(s) 49, 141, 763, 972, 1111, 1402
BstMWI GCNNNNNNNGC 3 cut(s) 204, 742, 1190
BstNI CCWGG 3 cut(s) 714, 977, 1043
BstNSI RCATGY 2 cut(s) 1328, 1339
BstSCI CCNGG 5 cut(s) 69, 516, 712, 975, 1041
BstSFI CTRYAG 1 cut(s) 856
BstUI CGCG 3 cut(s) 79, 470, 1452
BstV1I GCAGC 4 cut(s) 27, 86, 92, 144
BstX2I RGATCY 1 cut(s) 972
BstXI CCANNNNNNTGG 2 cut(s) 458, 673
BstYI RGATCY 1 cut(s) 972
BsuI GTATCC 2 cut(s) 243, 935
BsuRI GGCC 2 cut(s) 986, 1317
BtgZI GCGATG 1 cut(s) 1467
BtsCI GGATG 7 cut(s) 190, 319, 469, 526, 1282, 1318, 1426
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 441
BtuMI TCGCGA 1 cut(s) 1452
BveI ACCTGC 1 cut(s) 857
Cac8I GCNNGC 2 cut(s) 20, 166
CaiI CAGNNNCTG 2 cut(s) 428, 982
CfoI GCGC 4 cut(s) 79, 164, 470, 738
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 4 cut(s) 274, 514, 707, 1253
CseI GACGC 2 cut(s) 68, 459
Csp6I GTAC 2 cut(s) 498, 1046
CspCI CAANNNNNGTGG 2 cut(s) 1311, 1346
CviAII CATG 6 cut(s) 278, 295, 478, 796, 1325, 1336
CviQI GTAC 2 cut(s) 498, 1046
DdeI CTNAG 4 cut(s) 65, 932, 999, 1375
DpnI GATC 6 cut(s) 51, 143, 765, 974, 1113, 1404
DpnII GATC 6 cut(s) 49, 141, 763, 972, 1111, 1402
EaeI YGGCCR 2 cut(s) 984, 1315
EciI GGCGGA 1 cut(s) 917
Ecl136II GAGCTC 1 cut(s) 1474
Eco130I CCWWGG 1 cut(s) 1485
Eco24I GRGCYC 1 cut(s) 1476
Eco47I GGWCC 4 cut(s) 274, 514, 707, 1253
Eco47III AGCGCT 1 cut(s) 737
Eco53kI GAGCTC 1 cut(s) 1474
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 1474
EcoNI CCTNNNNNAGG 1 cut(s) 702
EcoRII CCWGG 3 cut(s) 712, 975, 1041
EcoT14I CCWWGG 1 cut(s) 1485
EcoT22I ATGCAT 3 cut(s) 526, 1330, 1341
EcoT38I GRGCYC 1 cut(s) 1476
ErhI CCWWGG 1 cut(s) 1485
FaeI CATG 6 cut(s) 281, 298, 481, 799, 1328, 1339
FalI AAGNNNNNCTT 4 cut(s) 164, 196, 725, 757
FaqI GGGAC 3 cut(s) 457, 918, 1239
FatI CATG 6 cut(s) 277, 294, 477, 795, 1324, 1335
FauI CCCGC 1 cut(s) 826
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 5 cut(s) 16, 75, 106, 133, 1501
FokI GGATG 7 cut(s) 177, 326, 476, 533, 1269, 1305, 1433
FriOI GRGCYC 1 cut(s) 1476
Fsp4HI GCNGC 5 cut(s) 16, 75, 106, 133, 1501
FspBI CTAG 3 cut(s) 204, 491, 531
GlaI GCGC 4 cut(s) 78, 163, 469, 737
GluI GCNGC 5 cut(s) 16, 75, 106, 133, 1501
GsuI CTGGAG 1 cut(s) 1215
HaeII RGCGCY 2 cut(s) 165, 739
HaeIII GGCC 2 cut(s) 986, 1317
HapII CCGG 3 cut(s) 71, 165, 518
HgaI GACGC 2 cut(s) 68, 459
HhaI GCGC 4 cut(s) 79, 164, 470, 738
Hin1II CATG 6 cut(s) 281, 298, 481, 799, 1328, 1339
Hin6I GCGC 4 cut(s) 77, 162, 468, 736
HinP1I GCGC 4 cut(s) 77, 162, 468, 736
HincII GTYRAC 1 cut(s) 1357
HindII GTYRAC 1 cut(s) 1357
HinfI GANTC 6 cut(s) 299, 439, 445, 575, 694, 1433
HpaII CCGG 3 cut(s) 71, 165, 518
HphI GGTGA 5 cut(s) 84, 226, 440, 881, 1045
Hpy166II GTNNAC 3 cut(s) 710, 1312, 1357
Hpy188I TCNGA 6 cut(s) 304, 418, 444, 514, 1116, 1181
Hpy188III TCNNGA 5 cut(s) 139, 149, 365, 1406, 1451
Hpy8I GTNNAC 3 cut(s) 710, 1312, 1357
HpyAV CCTTC 5 cut(s) 166, 211, 895, 1060, 1484
HpyCH4III ACNGT 1 cut(s) 754
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 742, 1190
HpyF3I CTNAG 4 cut(s) 65, 932, 999, 1375
Hsp92II CATG 6 cut(s) 281, 298, 481, 799, 1328, 1339
HspAI GCGC 4 cut(s) 77, 162, 468, 736
KpnI GGTACC 1 cut(s) 1049
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 6 cut(s) 49, 141, 763, 972, 1111, 1402
LmnI GCTCC 7 cut(s) 890, 1094, 1181, 1190, 1196, 1306, 1471
Lsp1109I GCAGC 4 cut(s) 27, 86, 92, 144
LweI GCATC 8 cut(s) 144, 199, 304, 409, 511, 754, 1291, 1444
MaeI CTAG 3 cut(s) 204, 491, 531
MaeIII GTNAC 3 cut(s) 480, 619, 823
MalI GATC 6 cut(s) 51, 143, 765, 974, 1113, 1404
MboI GATC 6 cut(s) 49, 141, 763, 972, 1111, 1402
MboII GAAGA 6 cut(s) 59, 793, 910, 1274, 1442, 1506
MflI RGATCY 1 cut(s) 972
MhlI GDGCHC 1 cut(s) 1476
MluCI AATT 5 cut(s) 323, 952, 1222, 1266, 1287
MlyI GAGTC 1 cut(s) 688
MmeI TCCRAC 2 cut(s) 563, 1398
Mph1103I ATGCAT 3 cut(s) 526, 1330, 1341
MroNI GCCGGC 1 cut(s) 164
MseI TTAA 6 cut(s) 569, 702, 951, 1151, 1166, 1394
MslI CAYNNNNRTG 2 cut(s) 122, 1323
MspA1I CMGCKG 3 cut(s) 105, 965, 1503
MspCI CTTAAG 1 cut(s) 1150
MspI CCGG 3 cut(s) 71, 165, 518
MspR9I CCNGG 5 cut(s) 71, 518, 714, 977, 1043
Mva1269I GAATGC 2 cut(s) 790, 1235
MvaI CCWGG 3 cut(s) 714, 977, 1043
MvnI CGCG 3 cut(s) 79, 470, 1452
MwoI GCNNNNNNNGC 3 cut(s) 204, 742, 1190
NaeI GCCGGC 1 cut(s) 166
NciI CCSGG 2 cut(s) 71, 518
NdeII GATC 6 cut(s) 49, 141, 763, 972, 1111, 1402
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 6 cut(s) 281, 298, 481, 799, 1328, 1339
NlaIV GGNNCC 5 cut(s) 516, 974, 1047, 1096, 1255
NmuCI GTSAC 2 cut(s) 480, 823
NruI TCGCGA 1 cut(s) 1452
NsiI ATGCAT 3 cut(s) 526, 1330, 1341
NspI RCATGY 2 cut(s) 1328, 1339
PaqCI CACCTGC 1 cut(s) 857
PctI GAATGC 2 cut(s) 790, 1235
PdiI GCCGGC 1 cut(s) 166
PfeI GAWTC 5 cut(s) 299, 439, 445, 575, 1433
PflMI CCANNNNNTGG 2 cut(s) 968, 982
PfoI TCCNGGA 1 cut(s) 975
PkrI GCNGC 5 cut(s) 17, 76, 107, 134, 1502
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
Psp124BI GAGCTC 1 cut(s) 1476
Psp6I CCWGG 3 cut(s) 712, 975, 1041
PspGI CCWGG 3 cut(s) 712, 975, 1041
PspN4I GGNNCC 5 cut(s) 516, 974, 1047, 1096, 1255
PspPI GGNCC 4 cut(s) 274, 514, 707, 1253
PstI CTGCAG 1 cut(s) 860
PstNI CAGNNNCTG 2 cut(s) 428, 982
PsuI RGATCY 1 cut(s) 972
PvuII CAGCTG 3 cut(s) 105, 965, 1503
RruI TCGCGA 1 cut(s) 1452
RsaI GTAC 2 cut(s) 499, 1047
RsaNI GTAC 2 cut(s) 498, 1046
RseI CAYNNNNRTG 2 cut(s) 122, 1323
SacI GAGCTC 1 cut(s) 1476
SaqAI TTAA 6 cut(s) 569, 702, 951, 1151, 1166, 1394
SatI GCNGC 5 cut(s) 16, 75, 106, 133, 1501
Sau3AI GATC 6 cut(s) 49, 141, 763, 972, 1111, 1402
Sau96I GGNCC 4 cut(s) 274, 514, 707, 1253
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 5 cut(s) 71, 518, 714, 977, 1043
SduI GDGCHC 1 cut(s) 1476
SfaNI GCATC 8 cut(s) 144, 199, 304, 409, 511, 754, 1291, 1444
SfcI CTRYAG 1 cut(s) 856
SinI GGWCC 4 cut(s) 274, 514, 707, 1253
SmiMI CAYNNNNRTG 2 cut(s) 122, 1323
SmlI CTYRAG 1 cut(s) 1150
SmoI CTYRAG 1 cut(s) 1150
Sse9I AATT 5 cut(s) 323, 952, 1222, 1266, 1287
SsiI CCGC 2 cut(s) 833, 928
SspI AATATT 2 cut(s) 848, 943
SspMI CTAG 3 cut(s) 204, 491, 531
SstI GAGCTC 1 cut(s) 1476
StyD4I CCNGG 5 cut(s) 69, 516, 712, 975, 1041
StyI CCWWGG 1 cut(s) 1485
TaaI ACNGT 1 cut(s) 754
TaqI TCGA 4 cut(s) 455, 748, 1260, 1464
TasI AATT 5 cut(s) 323, 952, 1222, 1266, 1287
TfiI GAWTC 5 cut(s) 299, 439, 445, 575, 1433
Tru1I TTAA 6 cut(s) 569, 702, 951, 1151, 1166, 1394
Tru9I TTAA 6 cut(s) 569, 702, 951, 1151, 1166, 1394
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 2 cut(s) 480, 823
TseI GCWGC 5 cut(s) 15, 74, 105, 132, 1500
Tsp45I GTSAC 2 cut(s) 480, 823
TspDTI ATGAA 1 cut(s) 806
TspRI CASTG 1 cut(s) 441
Van91I CCANNNNNTGG 2 cut(s) 968, 982
Vha464I CTTAAG 1 cut(s) 1150
VpaK11BI GGWCC 4 cut(s) 274, 514, 707, 1253
XagI CCTNNNNNAGG 1 cut(s) 702
XceI RCATGY 2 cut(s) 1328, 1339
XcmI CCANNNNNNNNNTGG 1 cut(s) 1105
XspI CTAG 3 cut(s) 204, 491, 531
Zsp2I ATGCAT 3 cut(s) 526, 1330, 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.