Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

26583651 .. 26608877

Gene Structure 25227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG269600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGCATGCTGAACAGTTTGTTGACCAGTACATTTCCAACCTTACCACAAGCCCTCTTGACCTTTCCAAGCCACTATGGGAAGTCCATATCCTCAATGTCAAAACCTCTGATGCAGAAGTTGTTGCAGTGATTCGGATTCACCACTCGATGGGGGATGGGGCATCCCTCATGTCACTTCTACTAGCTTGTGCTCGAAAAACATCAGGGTCCCTGATGCATTGCCTACTGTTCCAACCAAGAGGAAACAGGAGGATAGTTCTTCAAACCATCAACGATGTTATATTGGGAGTGACACAAGCAGGTTTCTCGCGGTATTTGAACAGCAGATATGATATTTCATTGCAGTCATTTTGTCTAACCTCTAACAAAAATGAGAAGGATGACGGAGCAAAGCAGAAGGGACACAATAATCTTCCTAAAAGCATCCGCCTTAGAGCAAATGTTCTCATGAATTTAAGACCAGCTGTTGGGATCCCG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

160

Amino Acids

17.79

Weight (kDa)

9.62

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_cat	PF03007	9 - 65	3.9e-08	Wax ester synthase/diacylglycerol acyltransferase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	293
AccB7I	CCANNNNNTGG	2 cut(s)	151, 470
AccII	CGCG	1 cut(s)	313
AciI	CCGC	2 cut(s)	313, 430
AclWI	GGATC	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	454
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	151, 470
AgsI	TTSAA	2 cut(s)	266, 322
AluBI	AGCT	2 cut(s)	188, 467
AluI	AGCT	2 cut(s)	188, 467
Alw21I	GWGCWC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	469
ApoI	RAATTY	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	196
BccI	CCATC	3 cut(s)	145, 152, 278
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BfaI	CTAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	3 cut(s)	211, 212, 476
BmsI	GCATC	4 cut(s)	103, 173, 207, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 470
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	2 cut(s)	220, 341
BseGI	GGATG	4 cut(s)	163, 164, 388, 426
BseLI	CCNNNNNNNGG	2 cut(s)	151, 470
BseMI	GCAATG	2 cut(s)	220, 341
BseNI	ACTGG	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	196
BslFI	GGGAC	2 cut(s)	196, 417
BslI	CCNNNNNNNGG	2 cut(s)	151, 470
BsmFI	GGGAC	2 cut(s)	196, 417
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	474
BspACI	CCGC	2 cut(s)	313, 430
BspFNI	CGCG	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	3 cut(s)	211, 212, 476
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	469
BsrDI	GCAATG	2 cut(s)	220, 341
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	18, 231
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	434
BstF5I	GGATG	4 cut(s)	163, 164, 388, 426
BstFNI	CGCG	1 cut(s)	313
BstKTI	GATC	1 cut(s)	477
BstMBI	GATC	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	11
BstUI	CGCG	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BtsCI	GGATG	4 cut(s)	163, 164, 388, 426
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	9
CciI	TCATGA	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	3 cut(s)	8, 172, 451
CviJI	RGCY	4 cut(s)	54, 73, 188, 467
CviKI_1	RGCY	4 cut(s)	54, 73, 188, 467
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	222
FaeI	CATG	3 cut(s)	11, 175, 454
FaiI	YATR	7 cut(s)	9, 79, 90, 173, 284, 333, 452
FaqI	GGGAC	2 cut(s)	196, 417
FatI	CATG	3 cut(s)	7, 171, 450
FokI	GGATG	4 cut(s)	151, 170, 395, 413
FspBI	CTAG	1 cut(s)	185
Hin1II	CATG	3 cut(s)	11, 175, 454
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	133, 139
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	112, 138
Hpy188III	TCNNGA	2 cut(s)	59, 451
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	373, 394
HpyCH4III	ACNGT	2 cut(s)	18, 231
HpyCH4V	TGCA	4 cut(s)	116, 128, 220, 346
HpyF3I	CTNAG	1 cut(s)	434
Hsp92II	CATG	3 cut(s)	11, 175, 454
KflI	GGGWCCC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	5 cut(s)	41, 192, 227, 235, 288
LweI	GCATC	4 cut(s)	103, 173, 207, 435
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	174, 292
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	2 cut(s)	254, 407
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	454
MmeI	TCCRAC	2 cut(s)	63, 259
MnlI	CCTC	7 cut(s)	66, 104, 118, 179, 236, 246, 373
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	313
NdeII	GATC	1 cut(s)	474
NlaIII	CATG	3 cut(s)	11, 175, 454
NlaIV	GGNNCC	3 cut(s)	211, 212, 476
NmuCI	GTSAC	2 cut(s)	174, 292
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	11
PagI	TCATGA	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	133, 139
PflMI	CCANNNNNTGG	2 cut(s)	151, 470
PpuMI	RGGWCCY	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	211, 212, 476
PspPI	GGNCC	1 cut(s)	210
PspPPI	RGGWCCY	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	474
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	458
Sau3AI	GATC	1 cut(s)	474
Sau96I	GGNCC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	7 cut(s)	45, 66, 110, 190, 307, 365, 469
SfaNI	GCATC	4 cut(s)	103, 173, 207, 435
SinI	GGWCC	1 cut(s)	210
SphI	GCATGC	1 cut(s)	11
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	2 cut(s)	313, 430
SspMI	CTAG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	18, 231
TaqI	TCGA	2 cut(s)	149, 196
TasI	AATT	1 cut(s)	454
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	133, 139
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	174, 292
Tsp45I	GTSAC	2 cut(s)	174, 292
TspDTI	ATGAA	3 cut(s)	17, 330, 467
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	2 cut(s)	151, 470
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.