Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005438.1

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

37509 .. 37808

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005438.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgaagcatgctgaacagtttgttgaccagtacatttccaaccttaccacaagccctcttgacctttccaagccactatgggaagtccatatcctcaatgtcaaaacctctgatgcagaagctgttgcaccgattcggattcaccactcgatgggggatggggcatccctcatgtcacttctactagcttgtgctcgaaaaacatcagggtccctgatgcattgcctactgttccaaccaagaggaaacaggaggatagtccttcaagtgattcgggcgtgttctagtggctcttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

99

Amino Acids

10.93

Weight (kDa)

8.99

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	151
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	2 cut(s)	122, 188
AluI	AGCT	2 cut(s)	122, 188
Alw21I	GWGCWC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	196
BccI	CCATC	2 cut(s)	145, 152
BfaI	CTAG	2 cut(s)	185, 285
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	211, 212
BmsI	GCATC	3 cut(s)	103, 173, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	163, 164
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	211, 212
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	18, 231
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	163, 164
BstNSI	RCATGY	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	163, 164
Cac8I	GCNNGC	1 cut(s)	9
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	8, 172
CviJI	RGCY	5 cut(s)	54, 73, 122, 188, 291
CviKI_1	RGCY	5 cut(s)	54, 73, 122, 188, 291
CviQI	GTAC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	222
FaeI	CATG	2 cut(s)	11, 175
FaiI	YATR	4 cut(s)	9, 79, 90, 173
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	7, 171
FokI	GGATG	2 cut(s)	151, 170
FspBI	CTAG	2 cut(s)	185, 285
Hin1II	CATG	2 cut(s)	11, 175
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	133, 139, 271
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	112, 138
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	18, 231
HpyCH4V	TGCA	3 cut(s)	116, 128, 220
Hsp92II	CATG	2 cut(s)	11, 175
KflI	GGGWCCC	1 cut(s)	210
LpnPI	CCDG	4 cut(s)	41, 192, 227, 235
LweI	GCATC	3 cut(s)	103, 173, 207
MaeI	CTAG	2 cut(s)	185, 285
MaeIII	GTNAC	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	196
MmeI	TCCRAC	2 cut(s)	63, 259
MnlI	CCTC	6 cut(s)	66, 104, 118, 179, 236, 246
Mph1103I	ATGCAT	1 cut(s)	222
NlaIII	CATG	2 cut(s)	11, 175
NlaIV	GGNNCC	2 cut(s)	211, 212
NmuCI	GTSAC	1 cut(s)	174
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	133, 139, 271
PflMI	CCANNNNNTGG	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	211, 212
PspPI	GGNCC	1 cut(s)	210
PspPPI	RGGWCCY	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	5 cut(s)	45, 66, 110, 124, 190
SfaNI	GCATC	3 cut(s)	103, 173, 207
SinI	GGWCC	1 cut(s)	210
SphI	GCATGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	185, 285
TaaI	ACNGT	2 cut(s)	18, 231
TaqI	TCGA	2 cut(s)	149, 196
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	3 cut(s)	133, 139, 271
TseFI	GTSAC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	210
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	2 cut(s)	185, 285
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.