Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00234

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

123944 .. 126005

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGAACACAAGCAGCTTGCTACTGAACTTTGAGGCAGAGATGGAAGATCAGCAACCAAGTCTAAGCCCGGCAGCGCGTCTGTTTCACTCACCAAAGTTCAGCTGCTATATTGTCATAAGAATGGGGTGCAGCATCAGGATCAATCCTGAAGTAATCAGCGCCGGCTTGAAGGAAACCTCGTATAAGCATCCTCGCTTCTCTAGCAAAATGGATGCAGATCAGTTTGTTAGAGACTTCATTTCGCGCCTTACTACAAGCCCTCTTGACCTTTCCAAGCTACTATGGGAAGTCCATATCCTCAATGTCGACAAAACCTCTGATGCAGGAGCCGTTTGCAGTGATTCGGTTCACTACTTGATGGCTGTGGCGCATCCCTCATCAGTAACATTGATAGGGAACACTCTTGTTGATCTTGTGCTGTTTTTTGCCACAATTCTGGTTTTGAAAGACACCAAGACTCCTATTAAAGGTCCACCTGGGGTTGAGCTTACTGCCAAGCGGTTCTTGCATCGAACGGTTAGTTTGGATCACATCAAGCAAGTAAAGAATGATATGAACATGGGGGTTGATCTTAGCATGGTTTCAACTTCAGAAGCAACGGAAACCATAACAATTGGTCCTGCCATTATAAGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

213

Amino Acids

23.47

Weight (kDa)

6.15

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	2 cut(s)	79, 247
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	2 cut(s)	149, 537
AcuI	CTGAAG	2 cut(s)	171, 576
AfaI	GTAC	1 cut(s)	637
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	3 cut(s)	172, 448, 588
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	4 cut(s)	18, 105, 280, 490
AluI	AGCT	4 cut(s)	18, 105, 280, 490
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	149, 537
ApeKI	GCWGC	4 cut(s)	15, 74, 105, 132
AspLEI	GCGC	4 cut(s)	79, 164, 249, 373
AspS9I	GGNCC	2 cut(s)	473, 620
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	84
AvaII	GGWCC	2 cut(s)	473, 620
BbvI	GCAGC	4 cut(s)	27, 86, 92, 144
BccI	CCATC	2 cut(s)	37, 355
BceAI	ACGGC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	4 cut(s)	16, 75, 106, 133
BlsI	GCNGC	4 cut(s)	17, 76, 107, 134
Bme1390I	CCNGG	2 cut(s)	71, 480
Bme18I	GGWCC	2 cut(s)	473, 620
BmgT120I	GGNCC	2 cut(s)	473, 620
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	2 cut(s)	71, 480
BmsI	GCATC	6 cut(s)	144, 199, 205, 313, 382, 520
BpuMI	CCSGG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	639
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse118I	RCCGGY	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	3 cut(s)	190, 220, 373
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseXI	GCAGC	4 cut(s)	27, 86, 92, 144
BsgI	GTGCAG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	79, 247
BsiSI	CCGG	2 cut(s)	71, 165
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	228
Bsp143I	GATC	6 cut(s)	49, 141, 220, 412, 529, 571
BspACI	CCGC	1 cut(s)	502
BspFNI	CGCG	2 cut(s)	79, 247
BspLI	GGNNCC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	149, 537
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	6 cut(s)	49, 141, 220, 412, 529, 571
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	20, 166
BstDEI	CTNAG	2 cut(s)	65, 575
BstENI	CCTNNNNNAGG	1 cut(s)	468
BstF5I	GGATG	3 cut(s)	190, 220, 373
BstFNI	CGCG	2 cut(s)	79, 247
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	4 cut(s)	79, 164, 249, 373
BstKTI	GATC	6 cut(s)	52, 144, 223, 415, 532, 574
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	6 cut(s)	49, 141, 220, 412, 529, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 508
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	69, 478
BstSNI	TACGTA	1 cut(s)	639
BstUI	CGCG	2 cut(s)	79, 247
BstV1I	GCAGC	4 cut(s)	27, 86, 92, 144
BstXI	CCANNNNNNTGG	1 cut(s)	439
BtsCI	GGATG	3 cut(s)	190, 220, 373
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	20, 166
CfoI	GCGC	4 cut(s)	79, 164, 249, 373
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	473, 620
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	2 cut(s)	562, 580
CviJI	RGCY	9 cut(s)	18, 69, 105, 168, 261, 280, 332, 365, 490
CviKI_1	RGCY	9 cut(s)	18, 69, 105, 168, 261, 280, 332, 365, 490
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	2 cut(s)	65, 575
DpnI	GATC	6 cut(s)	51, 143, 222, 414, 531, 573
DpnII	GATC	6 cut(s)	49, 141, 220, 412, 529, 571
Eco105I	TACGTA	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	473, 620
Eco57I	CTGAAG	2 cut(s)	171, 576
EcoNI	CCTNNNNNAGG	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	478
FaeI	CATG	2 cut(s)	565, 583
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	2 cut(s)	561, 579
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	16, 75, 106, 133
FokI	GGATG	3 cut(s)	177, 227, 360
Fsp4HI	GCNGC	4 cut(s)	16, 75, 106, 133
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	4 cut(s)	78, 163, 248, 372
GluI	GCNGC	4 cut(s)	16, 75, 106, 133
HaeII	RGCGCY	1 cut(s)	165
HapII	CCGG	2 cut(s)	71, 165
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	4 cut(s)	79, 164, 249, 373
Hin1II	CATG	2 cut(s)	565, 583
Hin6I	GCGC	4 cut(s)	77, 162, 247, 371
HinP1I	GCGC	4 cut(s)	77, 162, 247, 371
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	344, 460
HpaII	CCGG	2 cut(s)	71, 165
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	3 cut(s)	310, 352, 476
Hpy188I	TCNGA	2 cut(s)	322, 595
Hpy188III	TCNNGA	3 cut(s)	139, 149, 266
Hpy8I	GTNNAC	3 cut(s)	310, 352, 476
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	638
HpyCH4V	TGCA	5 cut(s)	132, 218, 326, 339, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 508
HpyF3I	CTNAG	2 cut(s)	65, 575
HpySE526I	ACGT	1 cut(s)	638
Hsp92II	CATG	2 cut(s)	565, 583
HspAI	GCGC	4 cut(s)	77, 162, 247, 371
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	6 cut(s)	49, 141, 220, 412, 529, 571
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	9 cut(s)	84, 124, 162, 178, 312, 425, 465, 492, 636
Lsp1109I	GCAGC	4 cut(s)	27, 86, 92, 144
LweI	GCATC	6 cut(s)	144, 199, 205, 313, 382, 520
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	638
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	6 cut(s)	51, 143, 222, 414, 531, 573
MboI	GATC	6 cut(s)	49, 141, 220, 412, 529, 571
MboII	GAAGA	1 cut(s)	59
MfeI	CAATTG	1 cut(s)	615
MluCI	AATT	2 cut(s)	435, 615
MlyI	GAGTC	1 cut(s)	454
MnlI	CCTC	7 cut(s)	28, 190, 204, 273, 311, 328, 388
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	2 cut(s)	71, 165
MspR9I	CCNGG	2 cut(s)	71, 480
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	480
MvnI	CGCG	2 cut(s)	79, 247
MwoI	GCNNNNNNNGC	2 cut(s)	204, 508
NaeI	GCCGGC	1 cut(s)	166
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	6 cut(s)	49, 141, 220, 412, 529, 571
NgoMIV	GCCGGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	565, 583
NlaIV	GGNNCC	1 cut(s)	331
PdiI	GCCGGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	17, 76, 107, 134
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Ppu21I	YACGTR	1 cut(s)	639
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	2 cut(s)	473, 620
PvuII	CAGCTG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
RseI	CAYNNNNRTG	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	16, 75, 106, 133
Sau3AI	GATC	6 cut(s)	49, 141, 220, 412, 529, 571
Sau96I	GGNCC	2 cut(s)	473, 620
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	2 cut(s)	71, 480
SfaNI	GCATC	6 cut(s)	144, 199, 205, 313, 382, 520
SinI	GGWCC	2 cut(s)	473, 620
SmiMI	CAYNNNNRTG	1 cut(s)	122
SnaBI	TACGTA	1 cut(s)	639
Sse9I	AATT	2 cut(s)	435, 615
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	69, 478
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	1 cut(s)	641
TaqI	TCGA	2 cut(s)	309, 514
TasI	AATT	2 cut(s)	435, 615
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	4 cut(s)	15, 74, 105, 132
TspDTI	ATGAA	2 cut(s)	229, 572
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	473, 620
XagI	CCTNNNNNAGG	1 cut(s)	468
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.