Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

9345012 .. 9345782

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0119100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCCGTCCCAACCTATCCTATGTCCGTCTTTCTTCTCCCCATAACTCTTTGCAAGGCGATCAACTCAGACATTGCCAACTTTTGGTGGGGGACAAACGAATCTAAAGGGAAAATTCATTGGAAAGCATGGAATAGCCTTTGTAGCAGCAAATTGGAGGGGGGAATTGGTTTTAAAGATCTGCATATCTATAACTTAGCCCTCTTGGCAAAACAGTGCTGGAGATTGGTCAAGAGTCCAAATTCTTTTTGGTGTAGAGTGTTGAAAGATCGGTACTTTGATACCTCCTCCTTTTTGAAAGCCAAAAGAGGTTCCAAGCCTTCGTGGATTTGGAATAGTTTACTGGCCAAAAGAGATATAATCACTGATAATGCTTTCTGGCAAGTCGGAAATGGTCGAAAGATTGACGTTTGGAAAGATAGATGGGTTCCTAATGGTAATGGTGGTCTGATCAAGCCAACTCTCACCTCCAACAAATTTACCCCCCTTCTTGTGTCGGAAATCATTGACGATAATAGGAACTGGAACTTTGAGCACTTGGAACCCTTCCTGGAGTCATCTGATGTTAGAGCTATAAAGGCTATCCCAATTGGGAATAGCAATGATGAGGATTCTTTGATCTGGCCCCATACAAAAAATGGCTCTTACTCAGTTAAAAGTGGATACCACAGGCTATTCTCTTCTGTTAATCTAGAGACAAGTAGCCTCTTGTGTATAGTACAGTCCAATTTCCTTGCAATGTTGTTATTTTCTTGTGGGAGGAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

256

Amino Acids

29.18

Weight (kDa)

9.44

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	84
AcoI	YGGCCR	2 cut(s)	3, 345
AcsI	RAATTY	3 cut(s)	114, 241, 476
AfaI	GTAC	2 cut(s)	275, 720
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	265, 298
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	2 cut(s)	572, 768
AluI	AGCT	2 cut(s)	572, 768
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	1 cut(s)	689
AoxI	GGCC	3 cut(s)	3, 345, 623
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	3 cut(s)	114, 241, 476
AspS9I	GGNCC	1 cut(s)	624
AsuHPI	GGTGA	1 cut(s)	457
BalI	TGGCCA	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	551
BciVI	GTATCC	1 cut(s)	656
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	1 cut(s)	692
BfuI	GTATCC	1 cut(s)	656
BglI	GCCNNNNNGGC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	624
BmiI	GGNNCC	4 cut(s)	313, 429, 543, 626
BmrFI	CCNGG	1 cut(s)	551
BpmI	CTGGAG	2 cut(s)	241, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	348, 527
Bse3DI	GCAATG	3 cut(s)	72, 607, 744
BseBI	CCWGG	1 cut(s)	551
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	3 cut(s)	72, 607, 744
BseMII	CTCAG	2 cut(s)	81, 663
BseNI	ACTGG	2 cut(s)	348, 527
BseRI	GAGGAG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	159
BshFI	GGCC	3 cut(s)	5, 347, 625
BsiHKAI	GWGCWC	1 cut(s)	537
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	689
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	3 cut(s)	5, 347, 625
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	5 cut(s)	60, 178, 268, 450, 618
BspANI	GGCC	3 cut(s)	5, 347, 625
BspCNI	CTCAG	2 cut(s)	80, 662
BspLI	GGNNCC	4 cut(s)	313, 429, 543, 626
BsrDI	GCAATG	3 cut(s)	72, 607, 744
BsrI	ACTGG	2 cut(s)	348, 527
BssMI	GATC	5 cut(s)	60, 178, 268, 450, 618
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	216, 723
Bst6I	CTCTTC	1 cut(s)	685
BstDEI	CTNAG	3 cut(s)	67, 196, 649
BstKTI	GATC	5 cut(s)	63, 181, 271, 453, 621
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	5 cut(s)	60, 178, 268, 450, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 206, 578
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	5, 347, 625
BtsIMutI	CAGTG	2 cut(s)	221, 363
Cfr13I	GGNCC	1 cut(s)	624
Csp6I	GTAC	2 cut(s)	274, 719
CviAII	CATG	1 cut(s)	129
CviQI	GTAC	2 cut(s)	274, 719
DdeI	CTNAG	3 cut(s)	67, 196, 649
DpnI	GATC	5 cut(s)	62, 180, 270, 452, 620
DpnII	GATC	5 cut(s)	60, 178, 268, 450, 618
DraI	TTTAAA	1 cut(s)	175
EaeI	YGGCCR	2 cut(s)	3, 345
Eam1104I	CTCTTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	549
FaeI	CATG	1 cut(s)	132
FaiI	YATR	9 cut(s)	23, 44, 130, 186, 192, 359, 575, 630, 716
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	1 cut(s)	148
GsuI	CTGGAG	2 cut(s)	241, 572
HaeIII	GGCC	3 cut(s)	5, 347, 625
Hin1II	CATG	1 cut(s)	132
HinfI	GANTC	4 cut(s)	101, 235, 554, 611
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	5 cut(s)	70, 389, 450, 499, 562
Hpy188III	TCNNGA	2 cut(s)	232, 692
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	3 cut(s)	330, 497, 556
HpyCH4III	ACNGT	2 cut(s)	216, 723
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	54, 184, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 206, 578
HpyF3I	CTNAG	3 cut(s)	67, 196, 649
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	5 cut(s)	60, 178, 268, 450, 618
LpnPI	CCDG	8 cut(s)	205, 329, 364, 508, 536, 563, 607, 655
Lsp1109I	GCAGC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	1 cut(s)	408
MalI	GATC	5 cut(s)	62, 180, 270, 452, 620
MboI	GATC	5 cut(s)	60, 178, 268, 450, 618
MboII	GAAGA	2 cut(s)	26, 672
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	7 cut(s)	114, 152, 165, 241, 476, 588, 727
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	244, 563
MmeI	TCCRAC	3 cut(s)	367, 477, 495
MnlI	CCTC	9 cut(s)	151, 212, 295, 298, 302, 478, 601, 716, 753
Mox20I	TGGCCA	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	3 cut(s)	174, 654, 687
Msp20I	TGGCCA	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	3 cut(s)	144, 206, 578
NdeII	GATC	5 cut(s)	60, 178, 268, 450, 618
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	4 cut(s)	313, 429, 543, 626
PfeI	GAWTC	2 cut(s)	101, 611
PflMI	CCANNNNNTGG	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	2 cut(s)	243, 562
PpsI	GAGTC	2 cut(s)	243, 562
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	4 cut(s)	313, 429, 543, 626
PspPI	GGNCC	1 cut(s)	624
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	275, 720
RsaNI	GTAC	2 cut(s)	274, 719
SaqAI	TTAA	3 cut(s)	174, 654, 687
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	5 cut(s)	60, 178, 268, 450, 618
Sau96I	GGNCC	1 cut(s)	624
SchI	GAGTC	2 cut(s)	244, 563
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	7 cut(s)	17, 287, 313, 411, 470, 574, 770
Sse9I	AATT	7 cut(s)	114, 152, 165, 241, 476, 588, 727
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	216, 723
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	397
TasI	AATT	7 cut(s)	114, 152, 165, 241, 476, 588, 727
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	2 cut(s)	101, 611
Tru1I	TTAA	3 cut(s)	174, 654, 687
Tru9I	TTAA	3 cut(s)	174, 654, 687
TscAI	CASTG	2 cut(s)	221, 370
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	2 cut(s)	221, 370
Van91I	CCANNNNNTGG	1 cut(s)	84
XapI	RAATTY	3 cut(s)	114, 241, 476
XbaI	TCTAGA	1 cut(s)	691
XcmI	CCANNNNNNNNNTGG	2 cut(s)	246, 635
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.