Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Forward (+)

66290082 .. 66290316

Gene Structure 235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGCTATTTGGTTAGCAGTAACATTGATAGGGAACACTCTTGTTGATCTTGTGCTATTTTTTGCCACAATTCTGGTTTTGAAAGACACCAAGACGCCTATTAAAGGTCCACCTGGGGTTGAGCTTACTGCCAAGCGGTTCTTCCATCGAACGGTTAGTTTGGATCACATCAAGCAAGTGAAGTCACACATACATATTTCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

68

Amino Acids

7.6

Weight (kDa)

9.99

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	104, 151
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
AlwI	GGATC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	107
BccI	CCATC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 151
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	2 cut(s)	104, 151
BslI	CCNNNNNNNGG	2 cut(s)	104, 151
Bsp143I	GATC	2 cut(s)	46, 163
BspACI	CCGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	46, 163
BssNI	GRCGYC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	95
BstENI	CCTNNNNNAGG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	49, 166
BstMBI	GATC	2 cut(s)	46, 163
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstXI	CCANNNNNNTGG	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	1 cut(s)	103
CviJI	RGCY	2 cut(s)	5, 124
CviKI_1	RGCY	2 cut(s)	5, 124
DpnI	GATC	2 cut(s)	48, 165
DpnII	GATC	2 cut(s)	46, 163
Eco47I	GGWCC	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	112
FaiI	YATR	3 cut(s)	191, 195, 205
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	46, 163
LpnPI	CCDG	3 cut(s)	59, 99, 126
MaeIII	GTNAC	2 cut(s)	19, 183
MalI	GATC	2 cut(s)	48, 165
MboI	GATC	2 cut(s)	46, 163
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	1 cut(s)	69
MseI	TTAA	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
NdeII	GATC	2 cut(s)	46, 163
NmuCI	GTSAC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	46, 163
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	3 cut(s)	109, 115, 126
SgeI	CNNG	9 cut(s)	53, 62, 86, 103, 125, 126, 145, 184, 188
SinI	GGWCC	1 cut(s)	107
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.