Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Forward (+)

41878810 .. 41892967

Gene Structure 14158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAAGCATGCTGAACAGTTTGTTGACCAGTACATTTCCAACCTTACCACAAGCCCTCTTGACCTTTCCAAGCCACTATGGGAAGTCCATATCCTCAATGTCAAAACCTCTGATGCAGAAGCTGTTGCAGTGATTCGGATTCACCACTCGATGGGGGATGGGGGATGGGGCATCCCTCATACCATCAACGATGTTATACTGGGAGTGACACAAGCAGGTTTCTCGCGGTATTTGAACAGCAGATATGCAGCAGGTGAAAATGAGAAGGATGACGGAGCAAAGCAGAAGGGACACAATAATCTTCCAAAAAGCATCCGCCTTAGAGCAAATGTTCTCATGAATTTACGACCAGCTGTTGGGATCCAGATGCAGCAATCGACTTACTTGGTCGATTACGACCAGTTACTTGATTCAAAGGATTTTGATCAGAGGTCCCAAACAGGACTTTTTGGGGAGTGTAAGAAGGCTGATCTGCACGGGAATGAGCGTGCTACCGTGCGCAGAGGCGATAGGAGGCACACGGGTGCGCAAGGGCTGCGGGGGCAGCACACGGCATGGCTAGCAAGGGCTAGGAGCTTGAGGCAGTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

197

Amino Acids

22.19

Weight (kDa)

9.44

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_cat	PF03007	9 - 54	1.2e-06	Wax ester synthase/diacylglycerol acyltransferase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc16I	TGCGCA	2 cut(s)	500, 528
Acc36I	ACCTGC	2 cut(s)	206, 242
AccB7I	CCANNNNNTGG	2 cut(s)	151, 356
AccII	CGCG	1 cut(s)	226
AciI	CCGC	3 cut(s)	226, 316, 538
AclWI	GGATC	2 cut(s)	355, 368
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	151, 356
AgsI	TTSAA	2 cut(s)	235, 414
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	3 cut(s)	122, 353, 576
AluI	AGCT	3 cut(s)	122, 353, 576
AlwI	GGATC	2 cut(s)	355, 368
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	4 cut(s)	248, 370, 535, 544
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	2 cut(s)	501, 529
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	134, 266
AsuNHI	GCTAGC	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	360
BbvI	GCAGC	4 cut(s)	260, 382, 522, 556
BccI	CCATC	4 cut(s)	145, 152, 159, 191
BceAI	ACGGC	1 cut(s)	567
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BclI	TGATCA	1 cut(s)	424
BfaI	CTAG	2 cut(s)	560, 570
BfuAI	ACCTGC	2 cut(s)	206, 242
BisI	GCNGC	4 cut(s)	249, 371, 536, 545
BlsI	GCNGC	4 cut(s)	250, 372, 537, 546
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	2 cut(s)	362, 434
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	4 cut(s)	103, 180, 321, 357
BmtI	GCTAGC	1 cut(s)	563
BmuI	ACTGGG	1 cut(s)	209
BsaBI	GATNNNNATC	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 356
Bse1I	ACTGG	3 cut(s)	28, 204, 400
Bse8I	GATNNNNATC	1 cut(s)	423
BseGI	GGATG	5 cut(s)	163, 170, 171, 274, 312
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	151, 356
BseNI	ACTGG	3 cut(s)	28, 204, 400
BseXI	GCAGC	4 cut(s)	260, 382, 522, 556
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	226
BslFI	GGGAC	2 cut(s)	303, 418
BslI	CCNNNNNNNGG	2 cut(s)	151, 356
BsmFI	GGGAC	2 cut(s)	303, 418
Bsp143I	GATC	3 cut(s)	360, 424, 469
BspACI	CCGC	3 cut(s)	226, 316, 538
BspFNI	CGCG	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	362, 434
BspMI	ACCTGC	2 cut(s)	206, 242
BspOI	GCTAGC	1 cut(s)	563
BspPI	GGATC	2 cut(s)	355, 368
BsrI	ACTGG	3 cut(s)	28, 204, 400
BssMI	GATC	3 cut(s)	360, 424, 469
Bst4CI	ACNGT	2 cut(s)	18, 496
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstC8I	GCNNGC	3 cut(s)	9, 489, 561
BstDEI	CTNAG	1 cut(s)	320
BstF5I	GGATG	5 cut(s)	163, 170, 171, 274, 312
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	501, 529
BstKTI	GATC	3 cut(s)	363, 427, 472
BstMBI	GATC	3 cut(s)	360, 424, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	535, 541, 544, 560
BstNSI	RCATGY	1 cut(s)	11
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	4 cut(s)	260, 382, 522, 556
BstX2I	RGATCY	1 cut(s)	360
BstYI	RGATCY	1 cut(s)	360
BtsCI	GGATG	5 cut(s)	163, 170, 171, 274, 312
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	2 cut(s)	206, 242
Cac8I	GCNNGC	3 cut(s)	9, 489, 561
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	501, 529
Cfr13I	GGNCC	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	3 cut(s)	8, 337, 555
CviJI	RGCY	9 cut(s)	54, 73, 122, 353, 467, 535, 559, 569, 576
CviKI_1	RGCY	9 cut(s)	54, 73, 122, 353, 467, 535, 559, 569, 576
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	3 cut(s)	362, 426, 471
DpnII	GATC	3 cut(s)	360, 424, 469
EciI	GGCGGA	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	432
FaeI	CATG	3 cut(s)	11, 340, 558
FaiI	YATR	8 cut(s)	9, 79, 90, 180, 197, 246, 338, 556
FaqI	GGGAC	2 cut(s)	303, 418
FatI	CATG	3 cut(s)	7, 336, 554
FauI	CCCGC	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	249, 371, 536, 545
FokI	GGATG	5 cut(s)	158, 170, 177, 281, 299
Fsp4HI	GCNGC	4 cut(s)	249, 371, 536, 545
FspBI	CTAG	2 cut(s)	560, 570
FspI	TGCGCA	2 cut(s)	500, 528
GlaI	GCGC	2 cut(s)	500, 528
GluI	GCNGC	4 cut(s)	249, 371, 536, 545
HhaI	GCGC	2 cut(s)	501, 529
Hin1II	CATG	3 cut(s)	11, 340, 558
Hin6I	GCGC	2 cut(s)	499, 527
HinP1I	GCGC	2 cut(s)	499, 527
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	133, 139, 410
HphI	GGTGA	2 cut(s)	134, 266
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	112, 138, 429
Hpy188III	TCNNGA	3 cut(s)	59, 337, 364
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	259, 280, 457
HpyCH4III	ACNGT	2 cut(s)	18, 496
HpyCH4V	TGCA	5 cut(s)	116, 128, 248, 370, 475
HpyF10VI	GCNNNNNNNGC	4 cut(s)	535, 541, 544, 560
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	11, 340, 558
HspAI	GCGC	2 cut(s)	499, 527
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	360, 424, 469
LmnI	GCTCC	2 cut(s)	275, 573
LpnPI	CCDG	8 cut(s)	41, 185, 201, 237, 363, 377, 413, 426
Lsp1109I	GCAGC	4 cut(s)	260, 382, 522, 556
LweI	GCATC	4 cut(s)	103, 180, 321, 357
MaeI	CTAG	2 cut(s)	560, 570
MaeIII	GTNAC	2 cut(s)	205, 402
MalI	GATC	3 cut(s)	362, 426, 471
MboI	GATC	3 cut(s)	360, 424, 469
MboII	GAAGA	1 cut(s)	293
MflI	RGATCY	1 cut(s)	360
MluCI	AATT	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	8 cut(s)	66, 104, 118, 186, 423, 497, 507, 573
MslI	CAYNNNNRTG	2 cut(s)	480, 522
MspA1I	CMGCKG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	4 cut(s)	535, 541, 544, 560
NdeII	GATC	3 cut(s)	360, 424, 469
NheI	GCTAGC	1 cut(s)	559
NlaIII	CATG	3 cut(s)	11, 340, 558
NlaIV	GGNNCC	2 cut(s)	362, 434
NmuCI	GTSAC	1 cut(s)	205
NsbI	TGCGCA	2 cut(s)	500, 528
NspI	RCATGY	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	522
PaeI	GCATGC	1 cut(s)	11
PagI	TCATGA	1 cut(s)	336
PaqCI	CACCTGC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	133, 139, 410
PflMI	CCANNNNNTGG	2 cut(s)	151, 356
PkrI	GCNGC	4 cut(s)	250, 372, 537, 546
PpuMI	RGGWCCY	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	362, 434
PspPI	GGNCC	1 cut(s)	432
PspPPI	RGGWCCY	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	480, 522
SatI	GCNGC	4 cut(s)	249, 371, 536, 545
Sau3AI	GATC	3 cut(s)	360, 424, 469
Sau96I	GGNCC	1 cut(s)	432
SetI	ASST	9 cut(s)	45, 66, 110, 124, 220, 256, 355, 434, 578
SfaNI	GCATC	4 cut(s)	103, 180, 321, 357
SinI	GGWCC	1 cut(s)	432
SmiMI	CAYNNNNRTG	2 cut(s)	480, 522
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
SphI	GCATGC	1 cut(s)	11
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	3 cut(s)	226, 316, 538
SspMI	CTAG	2 cut(s)	560, 570
TaaI	ACNGT	2 cut(s)	18, 496
TaqI	TCGA	3 cut(s)	149, 377, 390
TasI	AATT	1 cut(s)	340
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	3 cut(s)	133, 139, 410
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	4 cut(s)	248, 370, 535, 544
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	17, 353
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	2 cut(s)	151, 356
VpaK11BI	GGWCC	1 cut(s)	432
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	2 cut(s)	560, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.