Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002962.1

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Forward (+)

55261 .. 57489

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002962.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

atggaggaccatgttattgttccaaacatggattcagatatggaggatgctgaccaatttgttagagactacattttccaccttaccaaaagccctcttgacctttccaagccactatgggaagtccatatcctcaatgtcaaaacctctgatgcagaagctgttgcagtgattcggattcaccactcgattggggatggcgcgtccctcatgtcacttctactagcttgtaccagaaaaacatcggacccggatgcattgcctagtgttccaaccaagaggaaacatgagggtagttctttaagtgaatcgggcgtgttctggttgttgttattggctatctggtcagcagtaacattgatagggaacactcttgttgatattgtgctgtttgtagccactattctggttttgaaagacacaaagactcctattaaaggtccacctggggttgagcttactgccaagcgcttcttgcatcgaacagttagttttgatcacatcaaacaagtgaagaatgctatgaacatgaccatcaatgatgttgtattaggagtgacacaggcgggtctatcgcaatatttgaactgcagatatggtgaaaatgagaaagatgagggagcaaagaagaagggacataatctaccaaaaagtatccgccttagagcaaatattctcgttaatttacgaccagctgttgggatccaggaactggccgatatgatggctaagaagtccaagaccaagtggggtaataggattggatatgtcctggtacccttcaccattgctctacaagatgaccctttggattatgttcgtggagccaagttgcttatggatcggaaaaagcactcatttgaagcatttttcacatacttaagtgccaatcttttaaccaaactaatcggagcaaagggagctggagcagtagcacacagagttctttgtaattccacattagcattcacaaacttgattggtcccctcgaagaaattagctattacgggcatccaattacttacattgctcctaatgtttacggccatccacatgcattgcacatgcattttcaaagctatgttgacaaaatgactattagcttagcctttgaccccgatttaatccctgatcctgaaaagttgttggatgatttagaagaatcactcaaactcattcgcgatgctgttgtcgaaaaggagctcaacattgccaaggaaggaagaagcagctgtgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

413

Amino Acids

45.85

Weight (kDa)

6.98

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	775
AccB7I	CCANNNNNTGG	2 cut(s)	698, 712
AccII	CGCG	2 cut(s)	203, 1182
AciI	CCGC	2 cut(s)	566, 658
AclWI	GGATC	4 cut(s)	697, 710, 849, 1127
AcoI	YGGCCR	2 cut(s)	714, 1045
AfaI	GTAC	2 cut(s)	232, 777
AfeI	AGCGCT	1 cut(s)	470
AfiI	CCNNNNNNNGG	3 cut(s)	437, 698, 712
AflII	CTTAAG	1 cut(s)	880
AgsI	TTSAA	4 cut(s)	415, 586, 863, 1076
AjnI	CCWGG	3 cut(s)	445, 705, 771
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
Alw21I	GWGCWC	1 cut(s)	1206
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	4 cut(s)	697, 710, 849, 1127
AlwNI	CAGNNNCTG	2 cut(s)	161, 712
Aor51HI	AGCGCT	1 cut(s)	470
AoxI	GGCC	2 cut(s)	714, 1045
ApeKI	GCWGC	1 cut(s)	1230
Asp718I	GGTACC	1 cut(s)	775
AspLEI	GCGC	2 cut(s)	203, 471
AspS9I	GGNCC	4 cut(s)	7, 247, 440, 983
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	173, 611, 775
AvaII	GGWCC	4 cut(s)	7, 247, 440, 983
BamHI	GGATCC	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	1206
Bbv12I	GWGCWC	1 cut(s)	1206
BccI	CCATC	4 cut(s)	191, 542, 718, 1056
BceAI	ACGGC	1 cut(s)	1060
BciT130I	CCWGG	3 cut(s)	447, 707, 773
BciVI	GTATCC	1 cut(s)	665
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	224, 264
BfmI	CTRYAG	1 cut(s)	589
BfoI	RGCGCY	1 cut(s)	472
BfrI	CTTAAG	1 cut(s)	880
BfuI	GTATCC	1 cut(s)	665
BisI	GCNGC	1 cut(s)	1231
BlpI	GCTNAGC	1 cut(s)	1105
BlsI	GCNGC	1 cut(s)	1232
Bme1390I	CCNGG	4 cut(s)	251, 447, 707, 773
Bme18I	GGWCC	4 cut(s)	7, 247, 440, 983
BmgT120I	GGNCC	4 cut(s)	7, 247, 440, 983
BmiI	GGNNCC	5 cut(s)	249, 704, 777, 826, 985
BmrFI	CCNGG	4 cut(s)	251, 447, 707, 773
BmsI	GCATC	6 cut(s)	37, 142, 244, 487, 1021, 1174
BpmI	CTGGAG	1 cut(s)	945
Bpu1102I	GCTNAGC	1 cut(s)	1105
BpuMI	CCSGG	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	446, 1215
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	437, 698, 712
Bse1I	ACTGG	1 cut(s)	717
Bse3DI	GCAATG	5 cut(s)	257, 786, 1026, 1058, 1209
BseBI	CCWGG	3 cut(s)	447, 707, 773
BseDI	CCNNGG	2 cut(s)	446, 1215
BseGI	GGATG	6 cut(s)	52, 202, 259, 1012, 1048, 1156
BseLI	CCNNNNNNNGG	3 cut(s)	437, 698, 712
BseMI	GCAATG	5 cut(s)	257, 786, 1026, 1058, 1209
BseNI	ACTGG	1 cut(s)	717
Bsh1236I	CGCG	2 cut(s)	203, 1182
BshFI	GGCC	2 cut(s)	716, 1047
BshNI	GGYRCC	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	1206
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	3 cut(s)	190, 648, 969
BslI	CCNNNNNNNGG	3 cut(s)	437, 698, 712
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	3 cut(s)	190, 648, 969
BsmI	GAATGC	2 cut(s)	523, 965
BsnI	GGCC	2 cut(s)	716, 1047
Bsp1286I	GDGCHC	1 cut(s)	1206
Bsp143I	GATC	4 cut(s)	496, 702, 841, 1132
Bsp1720I	GCTNAGC	1 cut(s)	1105
Bsp68I	TCGCGA	1 cut(s)	1182
BspACI	CCGC	2 cut(s)	566, 658
BspANI	GGCC	2 cut(s)	716, 1047
BspFNI	CGCG	2 cut(s)	203, 1182
BspLI	GGNNCC	5 cut(s)	249, 704, 777, 826, 985
BspMAI	CTGCAG	1 cut(s)	593
BspPI	GGATC	4 cut(s)	697, 710, 849, 1127
BspT107I	GGYRCC	1 cut(s)	775
BspTI	CTTAAG	1 cut(s)	880
BsrDI	GCAATG	5 cut(s)	257, 786, 1026, 1058, 1209
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	2 cut(s)	446, 1215
BssMI	GATC	4 cut(s)	496, 702, 841, 1132
BssT1I	CCWWGG	1 cut(s)	1215
Bst2UI	CCWGG	3 cut(s)	447, 707, 773
Bst4CI	ACNGT	1 cut(s)	487
BstAFI	CTTAAG	1 cut(s)	880
BstDEI	CTNAG	3 cut(s)	662, 729, 1105
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	6 cut(s)	52, 202, 259, 1012, 1048, 1156
BstFNI	CGCG	2 cut(s)	203, 1182
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	2 cut(s)	203, 471
BstKTI	GATC	4 cut(s)	499, 705, 844, 1135
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	4 cut(s)	496, 702, 841, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	475, 920
BstNI	CCWGG	3 cut(s)	447, 707, 773
BstNSI	RCATGY	2 cut(s)	1058, 1069
BstSCI	CCNGG	4 cut(s)	249, 445, 705, 771
BstSFI	CTRYAG	1 cut(s)	589
BstUI	CGCG	2 cut(s)	203, 1182
BstX2I	RGATCY	1 cut(s)	702
BstXI	CCANNNNNNTGG	2 cut(s)	191, 406
BstYI	RGATCY	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	716, 1047
BtgZI	GCGATG	1 cut(s)	1197
BtsCI	GGATG	6 cut(s)	52, 202, 259, 1012, 1048, 1156
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
BtuMI	TCGCGA	1 cut(s)	1182
CaiI	CAGNNNCTG	2 cut(s)	161, 712
CfoI	GCGC	2 cut(s)	203, 471
Cfr13I	GGNCC	4 cut(s)	7, 247, 440, 983
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	231, 776
CspCI	CAANNNNNGTGG	2 cut(s)	1041, 1076
CviAII	CATG	7 cut(s)	11, 28, 211, 287, 529, 1055, 1066
CviQI	GTAC	2 cut(s)	231, 776
DdeI	CTNAG	3 cut(s)	662, 729, 1105
DpnI	GATC	4 cut(s)	498, 704, 843, 1134
DpnII	GATC	4 cut(s)	496, 702, 841, 1132
EaeI	YGGCCR	2 cut(s)	714, 1045
EciI	GGCGGA	1 cut(s)	647
Ecl136II	GAGCTC	1 cut(s)	1204
Eco130I	CCWWGG	1 cut(s)	1215
Eco24I	GRGCYC	1 cut(s)	1206
Eco47I	GGWCC	4 cut(s)	7, 247, 440, 983
Eco47III	AGCGCT	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	1204
EcoICRI	GAGCTC	1 cut(s)	1204
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoRII	CCWGG	3 cut(s)	445, 705, 771
EcoT14I	CCWWGG	1 cut(s)	1215
EcoT22I	ATGCAT	3 cut(s)	259, 1060, 1071
EcoT38I	GRGCYC	1 cut(s)	1206
ErhI	CCWWGG	1 cut(s)	1215
FaeI	CATG	7 cut(s)	14, 31, 214, 290, 532, 1058, 1069
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	3 cut(s)	190, 648, 969
FatI	CATG	7 cut(s)	10, 27, 210, 286, 528, 1054, 1065
FauI	CCCGC	1 cut(s)	559
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	1 cut(s)	1231
FokI	GGATG	6 cut(s)	59, 209, 266, 999, 1035, 1163
FriOI	GRGCYC	1 cut(s)	1206
Fsp4HI	GCNGC	1 cut(s)	1231
FspBI	CTAG	2 cut(s)	224, 264
GlaI	GCGC	2 cut(s)	202, 470
GluI	GCNGC	1 cut(s)	1231
GsuI	CTGGAG	1 cut(s)	945
HaeII	RGCGCY	1 cut(s)	472
HaeIII	GGCC	2 cut(s)	716, 1047
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	203, 471
Hin1II	CATG	7 cut(s)	14, 31, 214, 290, 532, 1058, 1069
Hin6I	GCGC	2 cut(s)	201, 469
HinP1I	GCGC	2 cut(s)	201, 469
HincII	GTYRAC	1 cut(s)	1087
HindII	GTYRAC	1 cut(s)	1087
HinfI	GANTC	6 cut(s)	32, 172, 178, 308, 427, 1163
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	3 cut(s)	173, 611, 775
Hpy166II	GTNNAC	3 cut(s)	443, 1042, 1087
Hpy188I	TCNGA	6 cut(s)	37, 151, 177, 247, 846, 911
Hpy188III	TCNNGA	3 cut(s)	98, 1136, 1181
Hpy8I	GTNNAC	3 cut(s)	443, 1042, 1087
HpyAV	CCTTC	3 cut(s)	625, 790, 1214
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4V	TGCA	8 cut(s)	155, 167, 257, 478, 591, 1058, 1063, 1069
HpyF10VI	GCNNNNNNNGC	2 cut(s)	475, 920
HpyF3I	CTNAG	3 cut(s)	662, 729, 1105
Hsp92II	CATG	7 cut(s)	14, 31, 214, 290, 532, 1058, 1069
HspAI	GCGC	2 cut(s)	201, 469
KpnI	GGTACC	1 cut(s)	779
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	496, 702, 841, 1132
LmnI	GCTCC	7 cut(s)	620, 824, 911, 920, 926, 1036, 1201
LweI	GCATC	6 cut(s)	37, 142, 244, 487, 1021, 1174
MaeI	CTAG	2 cut(s)	224, 264
MaeIII	GTNAC	3 cut(s)	213, 352, 556
MalI	GATC	4 cut(s)	498, 704, 843, 1134
MboI	GATC	4 cut(s)	496, 702, 841, 1132
MboII	GAAGA	5 cut(s)	526, 640, 1004, 1172, 1236
MflI	RGATCY	1 cut(s)	702
MhlI	GDGCHC	1 cut(s)	1206
MluCI	AATT	5 cut(s)	56, 682, 952, 996, 1017
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	296, 1128
MnlI	CCTC	9 cut(s)	37, 105, 143, 157, 218, 273, 283, 610, 998
Mph1103I	ATGCAT	3 cut(s)	259, 1060, 1071
MseI	TTAA	6 cut(s)	302, 435, 681, 881, 896, 1124
MslI	CAYNNNNRTG	1 cut(s)	1053
MspA1I	CMGCKG	2 cut(s)	695, 1233
MspCI	CTTAAG	1 cut(s)	880
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	4 cut(s)	251, 447, 707, 773
Mva1269I	GAATGC	2 cut(s)	523, 965
MvaI	CCWGG	3 cut(s)	447, 707, 773
MvnI	CGCG	2 cut(s)	203, 1182
MwoI	GCNNNNNNNGC	2 cut(s)	475, 920
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	496, 702, 841, 1132
NlaIII	CATG	7 cut(s)	14, 31, 214, 290, 532, 1058, 1069
NlaIV	GGNNCC	5 cut(s)	249, 704, 777, 826, 985
NmuCI	GTSAC	2 cut(s)	213, 556
NruI	TCGCGA	1 cut(s)	1182
NsiI	ATGCAT	3 cut(s)	259, 1060, 1071
NspI	RCATGY	2 cut(s)	1058, 1069
PctI	GAATGC	2 cut(s)	523, 965
PfeI	GAWTC	5 cut(s)	32, 172, 178, 308, 1163
PflMI	CCANNNNNTGG	2 cut(s)	698, 712
PfoI	TCCNGGA	1 cut(s)	705
PkrI	GCNGC	1 cut(s)	1232
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Psp124BI	GAGCTC	1 cut(s)	1206
Psp6I	CCWGG	3 cut(s)	445, 705, 771
PspGI	CCWGG	3 cut(s)	445, 705, 771
PspN4I	GGNNCC	5 cut(s)	249, 704, 777, 826, 985
PspPI	GGNCC	4 cut(s)	7, 247, 440, 983
PstI	CTGCAG	1 cut(s)	593
PstNI	CAGNNNCTG	2 cut(s)	161, 712
PsuI	RGATCY	1 cut(s)	702
PvuII	CAGCTG	2 cut(s)	695, 1233
RruI	TCGCGA	1 cut(s)	1182
RsaI	GTAC	2 cut(s)	232, 777
RsaNI	GTAC	2 cut(s)	231, 776
RseI	CAYNNNNRTG	1 cut(s)	1053
SacI	GAGCTC	1 cut(s)	1206
SaqAI	TTAA	6 cut(s)	302, 435, 681, 881, 896, 1124
SatI	GCNGC	1 cut(s)	1231
Sau3AI	GATC	4 cut(s)	496, 702, 841, 1132
Sau96I	GGNCC	4 cut(s)	7, 247, 440, 983
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	4 cut(s)	251, 447, 707, 773
SduI	GDGCHC	1 cut(s)	1206
SfaNI	GCATC	6 cut(s)	37, 142, 244, 487, 1021, 1174
SfcI	CTRYAG	1 cut(s)	589
SinI	GGWCC	4 cut(s)	7, 247, 440, 983
SmiMI	CAYNNNNRTG	1 cut(s)	1053
SmlI	CTYRAG	1 cut(s)	880
SmoI	CTYRAG	1 cut(s)	880
Sse9I	AATT	5 cut(s)	56, 682, 952, 996, 1017
SsiI	CCGC	2 cut(s)	566, 658
SspI	AATATT	2 cut(s)	581, 673
SspMI	CTAG	2 cut(s)	224, 264
SstI	GAGCTC	1 cut(s)	1206
StyD4I	CCNGG	4 cut(s)	249, 445, 705, 771
StyI	CCWWGG	1 cut(s)	1215
TaaI	ACNGT	1 cut(s)	487
TaqI	TCGA	4 cut(s)	188, 481, 990, 1194
TasI	AATT	5 cut(s)	56, 682, 952, 996, 1017
TfiI	GAWTC	5 cut(s)	32, 172, 178, 308, 1163
Tru1I	TTAA	6 cut(s)	302, 435, 681, 881, 896, 1124
Tru9I	TTAA	6 cut(s)	302, 435, 681, 881, 896, 1124
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	2 cut(s)	213, 556
TseI	GCWGC	1 cut(s)	1230
Tsp45I	GTSAC	2 cut(s)	213, 556
TspDTI	ATGAA	1 cut(s)	539
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	2 cut(s)	698, 712
Vha464I	CTTAAG	1 cut(s)	880
VpaK11BI	GGWCC	4 cut(s)	7, 247, 440, 983
XagI	CCTNNNNNAGG	1 cut(s)	435
XceI	RCATGY	2 cut(s)	1058, 1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	835
XspI	CTAG	2 cut(s)	224, 264
Zsp2I	ATGCAT	3 cut(s)	259, 1060, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.