Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Reverse (-)

27823828 .. 27824892

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTATTACAAGGATTAGGGTGCAGTGAAAAAAAGAGATGGGAACGAGTTTCAGTAAAAATTGAAGACCATGTCATTGTCCCAGACTTGGATTCGGAGATGAAGCATGCTGAACAGTTTGTTGACCAGTACATTTCCAACCTTACCACAAGCCCTCTTGACCTTTCCAAGCCACTATGGGAAGTCCATATCCTCAATGTCAAAACCTCTGATGCAGAAGCTGTTGCAGTGATTCGGATTCACCACTCGATGGGGGATGGGGCATCCCTCATGTCACTTCTACTAGCTTGTGCTCGAAAAACATCAGGGTCCCTGATGCATTGCCTACTGTTCCAACCAAGAGGAAACAGGAGGATAGTTCTTCAAACCATCAACGATGTTATATTGGGAGTGACACAAGCAGGTTTCTCGCGGTATTTGAACAGCAGATATGGTAAGTTCTCTAAGTGTGCACTGAATCACTTCAGTTTAACTGTAGCAGAATGTAGCTTTCCCCGGTTCCTTTGTCACTTGCTTATACAAACTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

176

Amino Acids

19.8

Weight (kDa)

8.57

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_cat	PF03007	14 - 98	6.7e-09	Wax ester synthase/diacylglycerol acyltransferase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccII	CGCG	1 cut(s)	412
AciI	CCGC	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	448
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	88, 250
AgsI	TTSAA	3 cut(s)	65, 365, 421
AluBI	AGCT	3 cut(s)	221, 287, 489
AluI	AGCT	3 cut(s)	221, 287, 489
Alw21I	GWGCWC	2 cut(s)	295, 454
Alw44I	GTGCAC	1 cut(s)	450
AlwNI	CAGNNNCTG	1 cut(s)	221
ApaLI	GTGCAC	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	461
AspS9I	GGNCC	1 cut(s)	309
AsuC2I	CCSGG	1 cut(s)	496
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	295, 454
BccI	CCATC	4 cut(s)	33, 244, 251, 377
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BcnI	CCSGG	1 cut(s)	496
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	496
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	3 cut(s)	310, 311, 500
BmrFI	CCNGG	1 cut(s)	496
BmsI	GCATC	3 cut(s)	202, 272, 306
BpiI	GAAGAC	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 250
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	262, 263
BseLI	CCNNNNNNNGG	2 cut(s)	88, 250
BseMI	GCAATG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	127
BseSI	GKGCMC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	412
BsiHKAI	GWGCWC	2 cut(s)	295, 454
BsiSI	CCGG	1 cut(s)	496
BslFI	GGGAC	2 cut(s)	65, 295
BslI	CCNNNNNNNGG	2 cut(s)	88, 250
BsmFI	GGGAC	2 cut(s)	65, 295
Bsp1286I	GDGCHC	2 cut(s)	295, 454
BspACI	CCGC	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	412
BspLI	GGNNCC	3 cut(s)	310, 311, 500
BspMI	ACCTGC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	494
Bst4CI	ACNGT	3 cut(s)	117, 330, 475
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	262, 263
BstFNI	CGCG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	1 cut(s)	454
BstUI	CGCG	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	262, 263
BtsI	GCAGTG	2 cut(s)	31, 234
BtsIMutI	CAGTG	3 cut(s)	31, 234, 452
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	108
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	71, 107, 271
CviJI	RGCY	5 cut(s)	153, 172, 221, 287, 489
CviKI_1	RGCY	5 cut(s)	153, 172, 221, 287, 489
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	321
FaeI	CATG	3 cut(s)	74, 110, 274
FaiI	YATR	8 cut(s)	72, 108, 178, 189, 272, 383, 432, 518
FaqI	GGGAC	2 cut(s)	65, 295
FatI	CATG	3 cut(s)	70, 106, 270
FokI	GGATG	2 cut(s)	250, 269
FspBI	CTAG	1 cut(s)	284
HapII	CCGG	1 cut(s)	496
Hin1II	CATG	3 cut(s)	74, 110, 274
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	4 cut(s)	92, 232, 238, 457
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	124, 452
Hpy188I	TCNGA	3 cut(s)	97, 211, 237
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	124, 452
HpyCH4III	ACNGT	3 cut(s)	117, 330, 475
HpyCH4V	TGCA	5 cut(s)	24, 215, 227, 319, 452
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	3 cut(s)	74, 110, 274
KflI	GGGWCCC	1 cut(s)	309
LpnPI	CCDG	7 cut(s)	96, 140, 291, 326, 334, 387, 509
LweI	GCATC	3 cut(s)	202, 272, 306
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	273, 391, 506
MboII	GAAGA	2 cut(s)	77, 353
MhlI	GDGCHC	2 cut(s)	295, 454
MluCI	AATT	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	162, 358
MnlI	CCTC	6 cut(s)	165, 203, 217, 278, 335, 345
Mph1103I	ATGCAT	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	1 cut(s)	470
MspI	CCGG	1 cut(s)	496
MspR9I	CCNGG	1 cut(s)	496
MvnI	CGCG	1 cut(s)	412
NciI	CCSGG	1 cut(s)	496
NlaIII	CATG	3 cut(s)	74, 110, 274
NlaIV	GGNNCC	3 cut(s)	310, 311, 500
NmuCI	GTSAC	3 cut(s)	273, 391, 506
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	4 cut(s)	92, 232, 238, 457
PflFI	GACNNNGTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	310, 311, 500
PspPI	GGNCC	1 cut(s)	309
PspPPI	RGGWCCY	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	470
Sau96I	GGNCC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	496
SduI	GDGCHC	2 cut(s)	295, 454
SetI	ASST	7 cut(s)	144, 165, 209, 223, 289, 406, 491
SfaNI	GCATC	3 cut(s)	202, 272, 306
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	309
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	494
TaaI	ACNGT	3 cut(s)	117, 330, 475
TaqI	TCGA	2 cut(s)	248, 295
TasI	AATT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	4 cut(s)	92, 232, 238, 457
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	3 cut(s)	31, 234, 459
TseFI	GTSAC	3 cut(s)	273, 391, 506
Tsp45I	GTSAC	3 cut(s)	273, 391, 506
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	3 cut(s)	31, 234, 459
Tth111I	GACNNNGTC	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	309
XceI	RCATGY	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.