Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006908.1

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Forward (+)

38147 .. 39155

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006908.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggatgtaaggagaagaaaaaatggccagaacgagcggctacttgcaatcgaaaacacgaaaatggagcatgtgaacgaggataaaatattaggtgaaaaaaagagatgggaacgagtttcagtaaaaattgaagaccatgtcattgtcccagacttggattcggagatgaagcatgctgaacagtttgttgaccaaagctgttgcagtgattcggattcaccactcgatgggggatggggcatccctcatgtcacttctactagcttgtgctcgaaaaacatcagggtccctgatgcattgcctactgttccaaccaagaggaaacaggaggatagttcttcaagtgattcgggcgtgttctggtggttcttattgactatttggtcagcaatcacattgataagaaacactcttgttgatcttgtgctgttcatagccactgctctggttcttaaagacacaaagactcctatgaaaggtccacctggggtggagtttacaaccaagcgcttcatgcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

174

Amino Acids

19.76

Weight (kDa)

6.52

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	37
AciI	CCGC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	25
AfeI	AGCGCT	1 cut(s)	512
AfiI	CCNNNNNNNGG	3 cut(s)	157, 230, 479
AgsI	TTSAA	2 cut(s)	134, 345
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	2 cut(s)	201, 267
AluI	AGCT	2 cut(s)	201, 267
Alw21I	GWGCWC	1 cut(s)	275
Aor51HI	AGCGCT	1 cut(s)	512
AoxI	GGCC	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	513
AspS9I	GGNCC	2 cut(s)	289, 482
AsuHPI	GGTGA	2 cut(s)	107, 213
AvaII	GGWCC	2 cut(s)	289, 482
BalI	TGGCCA	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	275
BccI	CCATC	3 cut(s)	102, 224, 231
BciT130I	CCWGG	1 cut(s)	489
BfaI	CTAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	514
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	2 cut(s)	289, 482
BmgT120I	GGNCC	2 cut(s)	289, 482
BmiI	GGNNCC	2 cut(s)	290, 291
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	252, 286
BpiI	GAAGAC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 230, 479
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	3 cut(s)	10, 242, 243
BseLI	CCNNNNNNNGG	3 cut(s)	157, 230, 479
BseMI	GCAATG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	134, 275
BslI	CCNNNNNNNGG	3 cut(s)	157, 230, 479
BsmFI	GGGAC	2 cut(s)	134, 275
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	290, 291
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	2 cut(s)	186, 310
BstC8I	GCNNGC	1 cut(s)	177
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	10, 242, 243
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	1 cut(s)	424
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	2 cut(s)	74, 179
BstSCI	CCNGG	1 cut(s)	487
BstV2I	GAAGAC	1 cut(s)	141
BstXI	CCANNNNNNTGG	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	3 cut(s)	10, 242, 243
BtsI	GCAGTG	2 cut(s)	214, 441
BtsIMutI	CAGTG	3 cut(s)	214, 441, 520
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	513
Cfr13I	GGNCC	2 cut(s)	289, 482
CviAII	CATG	5 cut(s)	71, 140, 176, 251, 517
CviJI	RGCY	5 cut(s)	27, 40, 201, 267, 440
CviKI_1	RGCY	5 cut(s)	27, 40, 201, 267, 440
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	289, 482
Eco47III	AGCGCT	1 cut(s)	512
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	487
EcoT22I	ATGCAT	1 cut(s)	301
FaeI	CATG	5 cut(s)	74, 143, 179, 254, 520
FaiI	YATR	7 cut(s)	72, 141, 177, 252, 437, 476, 518
FaqI	GGGAC	2 cut(s)	134, 275
FatI	CATG	5 cut(s)	70, 139, 175, 250, 516
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	3 cut(s)	17, 230, 249
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	1 cut(s)	38
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	1 cut(s)	27
HhaI	GCGC	1 cut(s)	513
Hin1II	CATG	5 cut(s)	74, 143, 179, 254, 520
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	5 cut(s)	161, 212, 218, 350, 469
HphI	GGTGA	2 cut(s)	107, 213
Hpy166II	GTNNAC	4 cut(s)	76, 193, 485, 501
Hpy188I	TCNGA	2 cut(s)	166, 217
Hpy8I	GTNNAC	4 cut(s)	76, 193, 485, 501
HpyCH4III	ACNGT	2 cut(s)	186, 310
HpyCH4V	TGCA	4 cut(s)	47, 207, 299, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
Hsp92II	CATG	5 cut(s)	74, 143, 179, 254, 520
HspAI	GCGC	1 cut(s)	511
KflI	GGGWCCC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	9 cut(s)	41, 165, 271, 306, 314, 349, 434, 474, 501
LweI	GCATC	2 cut(s)	252, 286
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	423
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	1 cut(s)	421
MboII	GAAGA	3 cut(s)	27, 146, 333
MhlI	GDGCHC	1 cut(s)	275
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	73, 258, 315, 325
Mox20I	TGGCCA	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	301
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	517
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	5 cut(s)	74, 143, 179, 254, 520
NlaIV	GGNNCC	2 cut(s)	290, 291
NmuCI	GTSAC	1 cut(s)	253
NsiI	ATGCAT	1 cut(s)	301
NspI	RCATGY	2 cut(s)	74, 179
PaeI	GCATGC	1 cut(s)	179
PfeI	GAWTC	4 cut(s)	161, 212, 218, 350
PflFI	GACNNNGTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	290, 291
PspPI	GGNCC	2 cut(s)	289, 482
PspPPI	RGGWCCY	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	2 cut(s)	289, 482
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	5 cut(s)	97, 203, 269, 484, 490
SfaNI	GCATC	2 cut(s)	252, 286
SinI	GGWCC	2 cut(s)	289, 482
SmiMI	CAYNNNNRTG	1 cut(s)	62
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	37
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	2 cut(s)	186, 310
TaqI	TCGA	3 cut(s)	51, 228, 275
TasI	AATT	1 cut(s)	129
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	4 cut(s)	161, 212, 218, 350
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	2 cut(s)	214, 448
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	4 cut(s)	185, 424, 491, 505
TspRI	CASTG	2 cut(s)	214, 448
Tth111I	GACNNNGTC	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	289, 482
XagI	CCTNNNNNAGG	1 cut(s)	477
XceI	RCATGY	2 cut(s)	74, 179
XspI	CTAG	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.