Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000991

Physical Location & Seq

Genomic Coordinates Forward (+)

41893349 .. 41894054

Gene Structure 706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTAAGAAGTCCAAGACCATGTCGGGTAATAAAATTGGATATGTACTTCTTCCCTTCACCATTGCTCTACAAGATGACCCTTTGGATTATGTTCGTGGAGCTAAGTCGCTCATTGATAAAAAAAAACACTCATATGAAGCTTTTTGGACATACTTATGTGCCAATCTTGTAACCAATCTAATTGAAGCTAAGGCGGCGCATTTACATTTTCAAAGCTATGCTGACAAAATGACTATTTGCCTAGGCGTCGACCCGGATGTACACCCCGATCCTGAAAAGTTGTTGGATGATTTAGAGGATTCACGCAAACTCATGCGCGGTGCAGTTGTTGACAATAAGGGGCTCCCCATTTCCAGGGAAGAAGCTGTGTCTCGGGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0047196 GO:0071704 GO:0071944 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

DUF1298 WES_acyltransf

Protein Analysis

128

Amino Acids

14.33

Weight (kDa)

7.76

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WS_DGAT_C	PF06974	10 - 67	3.3e-13	WS/DGAT C-terminal domain
WS_DGAT_C	PF06974	66 - 105	2.1e-08	WS/DGAT C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49190 AT3G49200 AT3G49210 AT3G49210 AT5G53390
fragaria_vesca	FvH4_5g22430 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660 FvH4_7g31660
malus_domestica	MD07G1289400.v1.1
prunus_persica	Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1 Prupe.2G310700_v2.0.a1
pyrus_communis	pycom07g26220
rosa_chinensis	RchiOBHm_Chr1g0380751 RchiOBHm_Chr1g0380761 RchiOBHm_Chr1g0380771 RchiOBHm_Chr1g0380861 RchiOBHm_Chr7g0210181 RchiOBHm_Chr7g0210211
rosa_laevigata	RLG00000003058 RLG00000026267 RLG00000026272
rosa_multiflora	Rmu_sc0001637.1_g000015 Rmu_sc0002892.1_g000011 Rmu_sc0002962.1_g000013 Rmu_sc0002962.1_g000014 Rmu_sc0002962.1_g000015 Rmu_sc0005438.1_g000009 Rmu_sc0006908.1_g000008
rosa_roxburghii	Rroxscaffold_3G00248550 Rroxscaffold_3G00248560 Rroxscaffold_4G00279010
rosa_rugosa	Rorug01G0424000 Rorug01G0424400 Rorug01G0424500 Rorug07G0119100
rosa_samantha	Rh1AG448900 Rh1BG403800 Rh1BG403900 Rh1BG404400 Rh1CG418100 Rh1CG418500 Rh1DG434000 Rh1DG434100 Rh1DG434800 Rh7AG252600 Rh7BG247700 Rh7CG269600 Rh7DG260200
rosa_wichuraiana	Rw0G005940 Rw1G039120 Rw7G021480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	321
AciI	CCGC	2 cut(s)	197, 321
AclWI	GGATC	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	48, 264
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	2 cut(s)	188, 215
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	104, 143, 191, 219, 368
AluI	AGCT	5 cut(s)	104, 143, 191, 219, 368
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	375
AspA2I	CCTAGG	1 cut(s)	244
AspLEI	GCGC	2 cut(s)	202, 321
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	375
AvrII	CCTAGG	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	348
BciT130I	CCWGG	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	1 cut(s)	198
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	257, 358
BmeT110I	CYCGRG	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	2 cut(s)	257, 358
Bpu10I	CCTNAGC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	244, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	244, 357
BseGI	GGATG	2 cut(s)	265, 295
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	197, 321
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	244, 357
BssMI	GATC	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	249
BstAUI	TGTACA	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	6, 105, 192
BstF5I	GGATG	2 cut(s)	265, 295
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	202, 321
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	255, 356
BstUI	CGCG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	265, 295
CfoI	GCGC	2 cut(s)	202, 321
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	47, 263
CviAII	CATG	2 cut(s)	22, 316
CviJI	RGCY	8 cut(s)	5, 104, 143, 191, 219, 346, 368, 380
CviKI_1	RGCY	8 cut(s)	5, 104, 143, 191, 219, 346, 368, 380
CviQI	GTAC	2 cut(s)	47, 263
DdeI	CTNAG	3 cut(s)	6, 105, 192
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	2 cut(s)	25, 319
FaiI	YATR	9 cut(s)	23, 45, 93, 136, 138, 154, 160, 222, 317
FatI	CATG	2 cut(s)	21, 315
FauNDI	CATATG	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	272, 302
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	2 cut(s)	201, 320
GluI	GCNGC	1 cut(s)	198
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	2 cut(s)	202, 321
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	25, 319
Hin6I	GCGC	2 cut(s)	200, 319
HinP1I	GCGC	2 cut(s)	200, 319
HincII	GTYRAC	2 cut(s)	253, 334
HindII	GTYRAC	2 cut(s)	253, 334
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	253, 265, 334
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	3 cut(s)	253, 265, 334
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	3 cut(s)	6, 105, 192
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	25, 319
HspAI	GCGC	2 cut(s)	200, 319
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	101, 351
LpnPI	CCDG	4 cut(s)	270, 288, 343, 370
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	2 cut(s)	44, 374
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	2 cut(s)	36, 183
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	1 cut(s)	292
MslI	CAYNNNNRTG	2 cut(s)	135, 157
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	257, 358
MvaI	CCWGG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	257
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	2 cut(s)	25, 319
NlaIV	GGNNCC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	347
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	2 cut(s)	48, 264
RsaNI	GTAC	2 cut(s)	47, 263
RseI	CAYNNNNRTG	2 cut(s)	135, 157
SalI	GTCGAC	1 cut(s)	251
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	257, 358
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	5 cut(s)	106, 145, 193, 221, 370
SmiMI	CAYNNNNRTG	2 cut(s)	135, 157
Sse9I	AATT	2 cut(s)	36, 183
SsiI	CCGC	2 cut(s)	197, 321
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	255, 356
StyI	CCWWGG	1 cut(s)	244
TaqI	TCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	36, 183
TatI	WGTACW	2 cut(s)	46, 262
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	153
Tth111I	GACNNNGTC	1 cut(s)	22
XmaJI	CCTAGG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.