FvH4_6g11040

ammonium transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
6602891 .. 6605662
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11040.t1

Sequence Viewer

Length: 1461 bp
ATGGCGACCAATCCTAGTAGTTTTGCCTACAGTGATGTCTCCCCAGCAGTGCCAAACTGGCTAAACAAAGGTGACAACGCATGGCAGCTCACGGCAGCCACCTTGGTAGGGCTGCAGAGCATGCCGGGCCTCATCATACTCTATGCAAGCATAGTTAAGAAGAAATGGGCAGTCAACTCCGCCTTCATGGCCCTCTACGCCTTCGCCGCCGTCCTCATTTGTTGGGTGCTTGTCGGCTACCGCATGGCCTTTGGAGACGAGCTCCTTCCATTTTGGGGTAAGGGAGCTCCTGCCTTAGGGCAGAAGTTTTTGATCCACCGAGCCAAGGTGCCGGAGAGCAAGCATTTACCGAGCGAGATGGTCGAGCCGTTTTACCCTATGGCGACGCTTGTGTACTTTCAGTTCACTTTTGCTGCCATCACGTTGATTTTGTTAGCTGGGTCAGTTCTTGGGCGCATGAACATCAAGGCTTGGATGGCTTTTGTTCCACTTTGGCTTATCTTTTCTTACACTGTTGGAGCCTTTAGTCTCTGGGGTGGAGGGTTCCTCTATCATTGGGGTGTCATTGACTACTCCGGTGGTTATGTCATCCACCTCTCCTCCGGCATCGCCGGTTTCACGGCGGCTTATTGGGTTGGTCCAAGGTTGAAGAGTGATAGGGAGAGGTTTCCACCAAACAACGTTTTGCTTATGCTTGCCGGAGCCGGGCTACTATGGATGGGATGGTCAGGTTTCAACGGCGGAGCACCATATGCAGCAAACATCAACGCTTCAATTGCGGTGTTGAACACAAACATATGTGCCGCCACGAGTCTTCTTGTGTGGACTTCTCTAGATGTCATGTTCTTCGGAAAGCCATCGGTGATCGGAGCCGTCCAGGGAATGATGACGGGGCTCGTGTGCATTACGCCGGGAGCAGGATTAGTTCAAGCGTGGGCGGCTATAATAATGGGAATTGCTTCTGGAAGCGTTCCATGGGTGACCATGATGGTTCTTCATAAAAAGTCTTCCCTGTTACAAAAGGTAGATGATACTCTAGGGGCATTTCATACACACGCAGTGGCCGGACTCCTAGGGGGCCTCCTCACCGGACTCTTTGCCGAGCCAGCTCTCTGCAGGCTCATACTGCCGGTTAGCAATAGTCGGGGTGCCTTCTACGGTGGAAATGGCGGAGTCCAATTTCTGAAACAAATTGTGGCTGCCTTGTTTGTGATTGCTTGGAACGTAGTCTCGACCACAATTATTCTTCTGGGTATAAGATGCTTCATACCTTTGAGAATGCCTGATGAACAGCTTTTGATCGGAGATGATGCAGTTCATGGAGAAGAGGCCTATGCTCTTTGGGGTGATGGAGAAAAATATGATCCAACAAAGCATGGCTGGAATACATCTGTTTATGGTGAAGAACTGGCACCGTCTCCATATATCAATGGGGCAAGAGGTGTCACCATTAATTTGTAA

Protein Analysis

487

Amino Acids

52.29

Weight (kDa)

8.46

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 27 - 445 9.6e-81 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 328, 1148, 1411
AciI CCGC 9 cut(s) 180, 207, 241, 623, 741, 779, 804, 938, 1170
AclI AACGTT 1 cut(s) 681
AclWI GGATC 2 cut(s) 307, 1358
AcoI YGGCCR 1 cut(s) 1062
AdeI CACNNNGTG 1 cut(s) 1060
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 6 cut(s) 108, 275, 296, 325, 705, 917
AgsI TTSAA 5 cut(s) 649, 736, 774, 787, 929
AjnI CCWGG 1 cut(s) 876
AluBI AGCT 6 cut(s) 88, 262, 287, 437, 1109, 1294
AluI AGCT 6 cut(s) 88, 262, 287, 437, 1109, 1294
Alw21I GWGCWC 3 cut(s) 264, 289, 748
Alw26I GTCTC 5 cut(s) 43, 249, 533, 1234, 1422
AlwI GGATC 2 cut(s) 307, 1358
AoxI GGCC 6 cut(s) 127, 189, 246, 1062, 1078, 1329
ApeKI GCWGC 6 cut(s) 85, 95, 112, 413, 755, 1199
AseI ATTAAT 1 cut(s) 1452
Asp700I GAANNNNTTC 1 cut(s) 958
AspA2I CCTAGG 1 cut(s) 1072
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 4 cut(s) 127, 190, 638, 1078
AsuC2I CCSGG 3 cut(s) 126, 706, 912
AsuHPI GGTGA 7 cut(s) 83, 874, 991, 1078, 1358, 1412, 1438
AvaII GGWCC 1 cut(s) 638
AvrII CCTAGG 1 cut(s) 1072
AxyI CCTNAGG 1 cut(s) 295
BanI GGYRCC 3 cut(s) 328, 1148, 1411
BanII GRGCYC 3 cut(s) 264, 289, 897
BauI CACGAG 2 cut(s) 808, 896
BbsI GAAGAC 2 cut(s) 806, 999
Bbv12I GWGCWC 3 cut(s) 264, 289, 748
BbvI GCAGC 6 cut(s) 97, 99, 107, 400, 767, 1186
BccI CCATC 8 cut(s) 352, 425, 469, 712, 717, 865, 982, 1343
BceAI ACGGC 6 cut(s) 108, 194, 352, 636, 754, 857
BciT130I CCWGG 1 cut(s) 878
BcnI CCSGG 3 cut(s) 126, 706, 912
BcoDI GTCTC 5 cut(s) 43, 249, 533, 1234, 1422
BfaI CTAG 4 cut(s) 15, 833, 1037, 1073
BfmI CTRYAG 3 cut(s) 28, 113, 1114
BglI GCCNNNNNGGC 2 cut(s) 58, 188
BlnI CCTAGG 1 cut(s) 1072
Bme1390I CCNGG 4 cut(s) 126, 706, 878, 912
Bme18I GGWCC 1 cut(s) 638
BmgT120I GGNCC 4 cut(s) 127, 190, 638, 1078
BmiI GGNNCC 8 cut(s) 330, 520, 545, 703, 871, 1079, 1150, 1413
BmrFI CCNGG 4 cut(s) 126, 706, 878, 912
BmsI GCATC 3 cut(s) 615, 1250, 1300
BpiI GAAGAC 2 cut(s) 806, 999
BplI GAGNNNNNCTC 4 cut(s) 246, 278, 531, 563
BpuMI CCSGG 3 cut(s) 126, 706, 912
BsaJI CCNNGG 6 cut(s) 102, 324, 641, 877, 974, 1072
BsaWI WCCGGW 2 cut(s) 575, 1088
BsaXI ACNNNNNCTCC 2 cut(s) 584, 614
Bsc4I CCNNNNNNNGG 6 cut(s) 108, 275, 296, 325, 705, 917
Bse118I RCCGGY 2 cut(s) 611, 1129
Bse1I ACTGG 2 cut(s) 62, 1413
Bse21I CCTNAGG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 878
BseDI CCNNGG 6 cut(s) 102, 324, 641, 877, 974, 1072
BseGI GGATG 4 cut(s) 480, 588, 723, 728
BseLI CCNNNNNNNGG 6 cut(s) 108, 275, 296, 325, 705, 917
BseNI ACTGG 2 cut(s) 62, 1413
BseRI GAGGAG 2 cut(s) 589, 1073
BseXI GCAGC 6 cut(s) 97, 99, 107, 400, 767, 1186
BseYI CCCAGC 2 cut(s) 43, 437
BshFI GGCC 6 cut(s) 129, 191, 248, 1064, 1080, 1331
BshNI GGYRCC 3 cut(s) 328, 1148, 1411
BsiHKAI GWGCWC 3 cut(s) 264, 289, 748
BslI CCNNNNNNNGG 6 cut(s) 108, 275, 296, 325, 705, 917
BsmAI GTCTC 5 cut(s) 43, 249, 533, 1234, 1422
BsmBI CGTCTC 2 cut(s) 249, 1422
BsmI GAATGC 1 cut(s) 1284
BsnI GGCC 6 cut(s) 129, 191, 248, 1064, 1080, 1331
Bsp1286I GDGCHC 4 cut(s) 264, 289, 748, 897
Bsp143I GATC 4 cut(s) 312, 864, 1299, 1363
Bsp19I CCATGG 1 cut(s) 974
BspACI CCGC 9 cut(s) 180, 207, 241, 623, 741, 779, 804, 938, 1170
BspANI GGCC 6 cut(s) 129, 191, 248, 1064, 1080, 1331
BspLI GGNNCC 8 cut(s) 330, 520, 545, 703, 871, 1079, 1150, 1413
BspMAI CTGCAG 2 cut(s) 117, 1118
BspPI GGATC 2 cut(s) 307, 1358
BspT107I GGYRCC 3 cut(s) 328, 1148, 1411
BsrFI RCCGGY 2 cut(s) 611, 1129
BsrI ACTGG 2 cut(s) 62, 1413
BssAI RCCGGY 2 cut(s) 611, 1129
BssECI CCNNGG 6 cut(s) 102, 324, 641, 877, 974, 1072
BssMI GATC 4 cut(s) 312, 864, 1299, 1363
BssSI CACGAG 2 cut(s) 808, 896
BssT1I CCWWGG 5 cut(s) 102, 324, 641, 974, 1072
Bst2BI CACGAG 2 cut(s) 808, 896
Bst2UI CCWGG 1 cut(s) 878
Bst4CI ACNGT 4 cut(s) 32, 514, 1160, 1416
Bst6I CTCTTC 2 cut(s) 644, 1320
BstAPI GCANNNNNTGC 2 cut(s) 121, 752
BstC8I GCNNGC 6 cut(s) 122, 148, 341, 696, 1107, 1118
BstDEI CTNAG 1 cut(s) 295
BstDSI CCRYGG 1 cut(s) 974
BstEII GGTNACC 1 cut(s) 979
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 4 cut(s) 480, 588, 723, 728
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 4 cut(s) 315, 867, 1302, 1366
BstMAI GTCTC 5 cut(s) 43, 249, 533, 1234, 1422
BstMBI GATC 4 cut(s) 312, 864, 1299, 1363
BstNI CCWGG 1 cut(s) 878
BstNSI RCATGY 1 cut(s) 124
BstPI GGTNACC 1 cut(s) 979
BstSCI CCNGG 4 cut(s) 124, 704, 876, 910
BstSFI CTRYAG 3 cut(s) 28, 113, 1114
BstV1I GCAGC 6 cut(s) 97, 99, 107, 400, 767, 1186
BstV2I GAAGAC 2 cut(s) 806, 999
Bsu36I CCTNAGG 1 cut(s) 295
BsuRI GGCC 6 cut(s) 129, 191, 248, 1064, 1080, 1331
BtgI CCRYGG 1 cut(s) 974
BtgZI GCGATG 1 cut(s) 592
BtsCI GGATG 4 cut(s) 480, 588, 723, 728
BtsI GCAGTG 2 cut(s) 54, 1065
BtsIMutI CAGTG 4 cut(s) 37, 54, 510, 1065
Cac8I GCNNGC 6 cut(s) 122, 148, 341, 696, 1107, 1118
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 2 cut(s) 611, 1129
Cfr13I GGNCC 4 cut(s) 127, 190, 638, 1078
CseI GACGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 394
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 1 cut(s) 295
DpnI GATC 4 cut(s) 314, 866, 1301, 1365
DpnII GATC 4 cut(s) 312, 864, 1299, 1363
DraIII CACNNNGTG 1 cut(s) 1060
EaeI YGGCCR 1 cut(s) 1062
Eam1104I CTCTTC 2 cut(s) 644, 1320
EarI CTCTTC 2 cut(s) 644, 1320
EciI GGCGGA 3 cut(s) 169, 756, 1185
Ecl136II GAGCTC 2 cut(s) 262, 287
Eco130I CCWWGG 5 cut(s) 102, 324, 641, 974, 1072
Eco147I AGGCCT 1 cut(s) 1331
Eco24I GRGCYC 3 cut(s) 264, 289, 897
Eco47I GGWCC 1 cut(s) 638
Eco53kI GAGCTC 2 cut(s) 262, 287
Eco81I CCTNAGG 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 979
EcoICRI GAGCTC 2 cut(s) 262, 287
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 1078
EcoO65I GGTNACC 1 cut(s) 979
EcoRII CCWGG 1 cut(s) 876
EcoT14I CCWWGG 5 cut(s) 102, 324, 641, 974, 1072
EcoT38I GRGCYC 3 cut(s) 264, 289, 897
ErhI CCWWGG 5 cut(s) 102, 324, 641, 974, 1072
Esp3I CGTCTC 2 cut(s) 249, 1422
FauNDI CATATG 2 cut(s) 751, 797
FokI GGATG 4 cut(s) 487, 575, 730, 735
FriOI GRGCYC 3 cut(s) 264, 289, 897
FspBI CTAG 4 cut(s) 15, 833, 1037, 1073
GlaI GCGC 1 cut(s) 455
GsaI CCCAGC 2 cut(s) 47, 441
HaeIII GGCC 6 cut(s) 129, 191, 248, 1064, 1080, 1331
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 456
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 4 cut(s) 811, 1068, 1092, 1173
HphI GGTGA 7 cut(s) 83, 874, 991, 1078, 1358, 1412, 1438
Hpy166II GTNNAC 4 cut(s) 175, 394, 405, 825
Hpy188I TCNGA 4 cut(s) 851, 869, 1185, 1304
Hpy188III TCNNGA 3 cut(s) 833, 963, 1231
Hpy8I GTNNAC 4 cut(s) 175, 394, 405, 825
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 4 cut(s) 193, 211, 275, 1162
HpyCH4III ACNGT 4 cut(s) 32, 514, 1160, 1416
HpyCH4IV ACGT 3 cut(s) 422, 681, 1224
HpyCH4V TGCA 6 cut(s) 115, 146, 755, 903, 1116, 1313
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 3 cut(s) 422, 681, 1224
HspAI GCGC 1 cut(s) 454
Kzo9I GATC 4 cut(s) 312, 864, 1299, 1363
LmnI GCTCC 8 cut(s) 267, 284, 292, 518, 701, 743, 869, 914
Lsp1109I GCAGC 6 cut(s) 97, 99, 107, 400, 767, 1186
LweI GCATC 3 cut(s) 615, 1250, 1300
MaeI CTAG 4 cut(s) 15, 833, 1037, 1073
MaeII ACGT 3 cut(s) 422, 681, 1224
MaeIII GTNAC 4 cut(s) 71, 979, 1014, 1444
MalI GATC 4 cut(s) 314, 866, 1301, 1365
MboI GATC 4 cut(s) 312, 864, 1299, 1363
MboII GAAGA 9 cut(s) 172, 661, 806, 838, 986, 999, 1238, 1337, 1415
MfeI CAATTG 1 cut(s) 774
MhlI GDGCHC 4 cut(s) 264, 289, 748, 897
MluCI AATT 6 cut(s) 774, 954, 1178, 1191, 1239, 1453
MlyI GAGTC 4 cut(s) 820, 1062, 1086, 1182
MmeI TCCRAC 2 cut(s) 496, 1391
MroXI GAANNNNTTC 1 cut(s) 958
MseI TTAA 2 cut(s) 156, 1452
MslI CAYNNNNRTG 1 cut(s) 558
MspR9I CCNGG 4 cut(s) 126, 706, 878, 912
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 1 cut(s) 1284
MvaI CCWGG 1 cut(s) 878
NciI CCSGG 3 cut(s) 126, 706, 912
NcoI CCATGG 1 cut(s) 974
NdeI CATATG 2 cut(s) 751, 797
NdeII GATC 4 cut(s) 312, 864, 1299, 1363
NlaIV GGNNCC 8 cut(s) 330, 520, 545, 703, 871, 1079, 1150, 1413
NmeAIII GCCGAG 1 cut(s) 1126
NmuCI GTSAC 3 cut(s) 71, 979, 1444
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PceI AGGCCT 1 cut(s) 1331
PctI GAATGC 1 cut(s) 1284
PdmI GAANNNNTTC 1 cut(s) 958
PleI GAGTC 4 cut(s) 819, 1062, 1086, 1181
PpsI GAGTC 4 cut(s) 819, 1062, 1086, 1181
PshBI ATTAAT 1 cut(s) 1452
Psp124BI GAGCTC 2 cut(s) 264, 289
Psp1406I AACGTT 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 876
PspEI GGTNACC 1 cut(s) 979
PspFI CCCAGC 2 cut(s) 43, 437
PspGI CCWGG 1 cut(s) 876
PspN4I GGNNCC 8 cut(s) 330, 520, 545, 703, 871, 1079, 1150, 1413
PspPI GGNCC 4 cut(s) 127, 190, 638, 1078
PsrI GAACNNNNNNTAC 2 cut(s) 386, 418
PstI CTGCAG 2 cut(s) 117, 1118
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 558
SacI GAGCTC 2 cut(s) 264, 289
SaqAI TTAA 2 cut(s) 156, 1452
Sau3AI GATC 4 cut(s) 312, 864, 1299, 1363
Sau96I GGNCC 4 cut(s) 127, 190, 638, 1078
SchI GAGTC 4 cut(s) 820, 1062, 1086, 1182
ScrFI CCNGG 4 cut(s) 126, 706, 878, 912
SduI GDGCHC 4 cut(s) 264, 289, 748, 897
SfaNI GCATC 3 cut(s) 615, 1250, 1300
SfcI CTRYAG 3 cut(s) 28, 113, 1114
SinI GGWCC 1 cut(s) 638
SmiMI CAYNNNNRTG 1 cut(s) 558
SphI GCATGC 1 cut(s) 124
Sse9I AATT 6 cut(s) 774, 954, 1178, 1191, 1239, 1453
SseBI AGGCCT 1 cut(s) 1331
SsiI CCGC 9 cut(s) 180, 207, 241, 623, 741, 779, 804, 938, 1170
SspMI CTAG 4 cut(s) 15, 833, 1037, 1073
SstI GAGCTC 2 cut(s) 264, 289
StuI AGGCCT 1 cut(s) 1331
StyD4I CCNGG 4 cut(s) 124, 704, 876, 910
StyI CCWWGG 5 cut(s) 102, 324, 641, 974, 1072
TaaI ACNGT 4 cut(s) 32, 514, 1160, 1416
TaiI ACGT 3 cut(s) 425, 684, 1227
TaqI TCGA 2 cut(s) 363, 1232
TasI AATT 6 cut(s) 774, 954, 1178, 1191, 1239, 1453
TatI WGTACW 1 cut(s) 393
TauI GCSGC 4 cut(s) 209, 626, 806, 941
Tru1I TTAA 2 cut(s) 156, 1452
Tru9I TTAA 2 cut(s) 156, 1452
TscAI CASTG 4 cut(s) 37, 54, 517, 1065
TseFI GTSAC 3 cut(s) 71, 979, 1444
TseI GCWGC 6 cut(s) 85, 95, 112, 413, 755, 1199
Tsp45I GTSAC 3 cut(s) 71, 979, 1444
TspDTI ATGAA 7 cut(s) 175, 473, 986, 1037, 1255, 1302, 1307
TspRI CASTG 4 cut(s) 37, 54, 517, 1065
VpaK11BI GGWCC 1 cut(s) 638
VspI ATTAAT 1 cut(s) 1452
XagI CCTNNNNNAGG 1 cut(s) 294
XbaI TCTAGA 1 cut(s) 832
XceI RCATGY 1 cut(s) 124
XmaJI CCTAGG 1 cut(s) 1072
XmnI GAANNNNTTC 1 cut(s) 958
XspI CTAG 4 cut(s) 15, 833, 1037, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.