Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005467.1

Orthogroup ID

OG0001358

Physical Location & Seq

Genomic Coordinates Reverse (-)

50968 .. 51456

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005467.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgggagtattgtctggcagcgtgccatggttcaccatgatgatcgtagataaaaggtggagactcttaaccgtcgttgacgacacccttggcgttgtccacacccacgcagtggctggatacctaggcggcatattgaccggcatctttgccgagccccaactatgcgcactcttcttacctgtcacgaactctcgcggggtagtctacgggggcatgcaagtgttcaaacaaatcgtaggcggcctgttcatcatcggatggaacatcgtggtgacctcgatcatttgtgtggcaatccggtttgtgattcctctacggatgccagaggagcagttgttgattggagatgatgcagtgcatggggaagaggcctatgccttgtggggcgatggggagttgtatgatgaaactaagcatgataaacattactcggatgatgcctcacaaggtaagtttgaatccagtggtgccactcaggttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

162

Amino Acids

17.68

Weight (kDa)

4.9

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38290 AT2G38290
fragaria_vesca	FvH4_1g25720 FvH4_6g11040
malus_domestica	MD04G1162200.v1.1 MD12G1174700.v1.1 MD15G1139800.v1.1
prunus_persica	Prupe.4G283900_v2.0.a1 Prupe.4G285000_v2.0.a1 Prupe.4G285300_v2.0.a1 Prupe.4G285400_v2.0.a1 Prupe.6G281900_v2.0.a1
pyrus_communis	pycom04g14520 pycom15g12630
rosa_chinensis	RchiOBHm_Chr3g0462351 RchiOBHm_Chr3g0484601 RchiOBHm_Chr3g0484621 RchiOBHm_Chr3g0484631 RchiOBHm_Chr3g0484641
rosa_laevigata	RLG00000023210 RLG00000023213 RLG00000024864
rosa_multiflora	Rmu_co8101050.1_g000001 Rmu_sc0005467.1_g000003 Rmu_sc0005467.1_g000004 Rmu_sc0005467.1_g000010 Rmu_sc0005467.1_g000012 Rmu_sc0007199.1_g000001 Rmu_sc0007199.1_g000005 Rmu_sc0007199.1_g000006 Rmu_sc0007199.1_g000008 Rmu_sc0013434.1_g000001 Rmu_ssc0000061.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397570 Rroxscaffold_6G00397590
rosa_rugosa	Rorug03G0056100 Rorug03G0212700 Rorug03G0212800
rosa_samantha	Rh3AG114700 Rh3AG262800 Rh3AG262900 Rh3AG263100 Rh3BG117900 Rh3BG298300 Rh3BG298500 Rh3CG120700 Rh3CG295300 Rh3CG295600 Rh3CG295800 Rh3DG119900 Rh3DG291600 Rh3DG291800
rosa_wichuraiana	Rw3G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	198
AciI	CCGC	3 cut(s)	129, 198, 243
AdeI	CACNNNGTG	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	229, 461
Alw26I	GTCTC	1 cut(s)	55
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	244, 372
ApeKI	GCWGC	1 cut(s)	18
AspA2I	CCTAGG	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	25, 286
AvrII	CCTAGG	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	255, 386
BciVI	GTATCC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	125
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	3 cut(s)	19, 130, 244
BlnI	CCTAGG	1 cut(s)	124
BlsI	GCNGC	3 cut(s)	20, 131, 245
BmiI	GGNNCC	1 cut(s)	472
BmsI	GCATC	4 cut(s)	153, 312, 343, 430
BsaJI	CCNNGG	3 cut(s)	26, 88, 124
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	26, 88, 124
BseGI	GGATG	3 cut(s)	266, 327, 442
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	465
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	246, 374
BshNI	GGYRCC	1 cut(s)	470
BsiSI	CCGG	2 cut(s)	141, 301
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	246, 374
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	42, 282
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	3 cut(s)	129, 198, 243
BspANI	GGCC	2 cut(s)	246, 374
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	465
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	26, 88, 124
BssMI	GATC	2 cut(s)	42, 282
BssT1I	CCWWGG	3 cut(s)	26, 88, 124
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	179, 363
BstC8I	GCNNGC	2 cut(s)	23, 218
BstDEI	CTNAG	2 cut(s)	414, 477
BstDSI	CCRYGG	1 cut(s)	26
BstEII	GGTNACC	1 cut(s)	274
BstF5I	GGATG	3 cut(s)	266, 327, 442
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	45, 285
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	42, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	220
BstPI	GGTNACC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	246, 374
BtgI	CCRYGG	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	266, 327, 442
BtsI	GCAGTG	2 cut(s)	117, 363
BtsIMutI	CAGTG	3 cut(s)	117, 363, 472
Cac8I	GCNNGC	2 cut(s)	23, 218
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	140
CspCI	CAANNNNNGTGG	1 cut(s)	463
CviAII	CATG	5 cut(s)	27, 37, 217, 362, 419
CviJI	RGCY	4 cut(s)	116, 157, 246, 374
CviKI_1	RGCY	4 cut(s)	116, 157, 246, 374
DdeI	CTNAG	2 cut(s)	414, 477
DpnI	GATC	2 cut(s)	44, 284
DpnII	GATC	2 cut(s)	42, 282
DraIII	CACNNNGTG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	179, 363
EarI	CTCTTC	2 cut(s)	179, 363
Eco130I	CCWWGG	3 cut(s)	26, 88, 124
Eco147I	AGGCCT	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	274
EcoT14I	CCWWGG	3 cut(s)	26, 88, 124
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	26, 88, 124
FaeI	CATG	5 cut(s)	30, 40, 220, 365, 422
FaiI	YATR	9 cut(s)	28, 38, 134, 166, 218, 363, 378, 405, 420
FatI	CATG	5 cut(s)	26, 36, 216, 361, 418
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	19, 130, 244
FokI	GGATG	3 cut(s)	273, 334, 449
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	19, 130, 244
FspAI	RTGCGCAY	1 cut(s)	169
FspBI	CTAG	1 cut(s)	125
FspI	TGCGCA	1 cut(s)	169
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	19, 130, 244
HaeIII	GGCC	2 cut(s)	246, 374
HapII	CCGG	2 cut(s)	141, 301
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	30, 40, 220, 365, 422
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	63, 310, 461
HpaII	CCGG	2 cut(s)	141, 301
HphI	GGTGA	2 cut(s)	25, 286
Hpy166II	GTNNAC	4 cut(s)	33, 79, 100, 208
Hpy188I	TCNGA	2 cut(s)	260, 436
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	4 cut(s)	33, 79, 100, 208
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	220, 356, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	2 cut(s)	414, 477
Hsp92II	CATG	5 cut(s)	30, 40, 220, 365, 422
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	42, 282
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	8 cut(s)	102, 154, 195, 260, 314, 339, 464, 478
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	4 cut(s)	153, 312, 343, 430
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	184, 274
MalI	GATC	2 cut(s)	44, 284
MboI	GATC	2 cut(s)	42, 282
MboII	GAAGA	2 cut(s)	166, 380
MhlI	GDGCHC	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	289, 322, 324, 364, 454
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	4 cut(s)	38, 221, 272, 290
MspI	CCGG	2 cut(s)	141, 301
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	331
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	42, 282
NlaIII	CATG	5 cut(s)	30, 40, 220, 365, 422
NlaIV	GGNNCC	1 cut(s)	472
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	2 cut(s)	184, 274
NsbI	TGCGCA	1 cut(s)	169
NspI	RCATGY	1 cut(s)	220
PaeI	GCATGC	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	310, 461
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	3 cut(s)	20, 131, 245
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PspEI	GGTNACC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	116
RseI	CAYNNNNRTG	4 cut(s)	38, 221, 272, 290
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	3 cut(s)	19, 130, 244
Sau3AI	GATC	2 cut(s)	42, 282
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	59, 126, 184, 281, 454, 483
SfaNI	GCATC	4 cut(s)	153, 312, 343, 430
SmiMI	CAYNNNNRTG	4 cut(s)	38, 221, 272, 290
SphI	GCATGC	1 cut(s)	220
SseBI	AGGCCT	1 cut(s)	374
SsiI	CCGC	3 cut(s)	129, 198, 243
SspMI	CTAG	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	374
StyI	CCWWGG	3 cut(s)	26, 88, 124
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	281
TauI	GCSGC	2 cut(s)	132, 246
TfiI	GAWTC	2 cut(s)	310, 461
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	3 cut(s)	117, 363, 472
TseFI	GTSAC	2 cut(s)	184, 274
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	2 cut(s)	184, 274
TspDTI	ATGAA	2 cut(s)	241, 423
TspGWI	ACGGA	1 cut(s)	334
TspRI	CASTG	3 cut(s)	117, 363, 472
Van91I	CCANNNNNTGG	1 cut(s)	112
XceI	RCATGY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.