Rh3DG291800

Ammonium transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001358
Physical Location & Seq
Forward (+)
30204349 .. 30209326
4978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG291800.1

Sequence Viewer

Length: 1203 bp
ATGTCGTTCGGGGAGAAGCTGCTGCCGTTTTGGGGCAAGGCCGGGCCTGCCTTAGGGCAGAAGTTTCTGCTCAAGCAGGCTGCCATCCCCGCCTCCACACACTACTACGCCAACGGCGATGTCGAGACTGCCATGGCCACGCCGTGGTACCCGATGGCGAGCATGGTGTATTTTCACTGCATGTTTGCGGCCATAACACCGATACTGTTGGCAGGGTCGGTGCTGGGGAGAATGAACTTCAAGGCGTGGATGATGTTCGTGCCTCTGTGGCTGACCTTCTCGTACACCGTCGGTGCGTTTAGCATGTGGGGCGGAGGGTTTTTATTTCATTGGGGAGTTATGGACTACGCCGGCGGGTACGTCATTCATCTTTCTTCAGGGACCGCTGGTTTCATCACTGCTTACTGGGTAGGACCTAGGCTGAAGAAGGACAGGGAGAGATTCCCACCAAACAACGTGCTGCTGACTTTGGCGGGAGCGGGGTTGCTGTGGATGGGATGGGCCGGTTTCAACGGCGGAGATCCGTATGCGGCCAACATAACCGCCTCCATGGCTGTCCTCAACACTAACATCTGCGCCGCCACGAGTCTCGTGGTGTGGACGGCGCTCGATGTCATCTTCTTCAACAAGCCCTCCGTCATCGGAGCAGTCCAGGGAATGATTACCGGCCTCGTCGTCATTACTCCCGCTGCAGGTCTTGTACAAGGATGGGCAGCAATAGTGATGGGAGTATTGGCTGGCAGCGTGCCATGGTTCACCATGATGATCGTAGACAAAAGGTGGAGACTCTTAACTGCAGTTGACGACACCCTCGGCGTCGTGCATACCCACGCAGTGGCCGGATTCCTAGGCGGCATATTGACCGGTATCTTTGCCGAGCCCCAACTATGTGCGCTCTTCTTGCCAGCCACGAACTCTCGCGGGGTAGTCTACGGGGGCATCCAAGTGTTCAAACAAATAGTAGCCGCCCTGTTCATCATCGGATGGAACATCGTGGTGACCTCAATCATTTGTGTGGCAATTCGGTTTGTGGTTCCTCTACGCATGCCGGAGGAGCAGTTGTTGATTGGAGATGACGCAGTGCATGGGGAAGAGGCCTACGCTTTGTGGGGTGATGGGGAGCTGTATGATGAAACTAAGCATGATAAACATTACTCGGAAAATGGTAAGTTTGCATCCAATGGCACCACTCAGGCTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ammonium_transp

Protein Analysis

400

Amino Acids

43.23

Weight (kDa)

6.49

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 47 - 367 1.6e-71 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 683
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 2 cut(s) 147, 1184
AccB7I CCANNNNNTGG 2 cut(s) 144, 835
AccBSI CCGCTC 1 cut(s) 479
AccI GTMKAC 2 cut(s) 771, 930
AccII CGCG 1 cut(s) 921
AclWI GGATC 1 cut(s) 515
AcoI YGGCCR 4 cut(s) 135, 189, 531, 837
AcuI CTGAAG 2 cut(s) 360, 443
AcyI GRCGYC 1 cut(s) 816
AdeI CACNNNGTG 2 cut(s) 144, 835
AfaI GTAC 4 cut(s) 149, 284, 359, 702
AfiI CCNNNNNNNGG 5 cut(s) 32, 53, 144, 692, 835
AgeI ACCGGT 1 cut(s) 863
AgsI TTSAA 4 cut(s) 241, 511, 625, 952
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 2 cut(s) 19, 1123
AluI AGCT 2 cut(s) 19, 1123
Alw26I GTCTC 3 cut(s) 119, 593, 778
AlwI GGATC 1 cut(s) 515
AoxI GGCC 9 cut(s) 39, 44, 135, 189, 501, 531, 667, 837, 1095
ApeKI GCWGC 7 cut(s) 19, 22, 80, 460, 689, 713, 741
AsiGI ACCGGT 1 cut(s) 863
Asp718I GGTACC 1 cut(s) 147
AspA2I CCTAGG 2 cut(s) 416, 847
AspLEI GCGC 3 cut(s) 578, 607, 895
AspS9I GGNCC 4 cut(s) 44, 381, 413, 501
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 3 cut(s) 748, 1009, 1124
AvaII GGWCC 2 cut(s) 381, 413
AvrII CCTAGG 2 cut(s) 416, 847
AxyI CCTNAGG 1 cut(s) 52
BalI TGGCCA 1 cut(s) 137
BanI GGYRCC 2 cut(s) 147, 1184
BanII GRGCYC 1 cut(s) 882
BauI CACGAG 2 cut(s) 583, 590
BbvI GCAGC 7 cut(s) 6, 9, 67, 447, 676, 725, 753
BccI CCATC 8 cut(s) 92, 148, 487, 492, 702, 718, 978, 1109
BceAI ACGGC 5 cut(s) 10, 127, 130, 529, 618
BciT130I CCWGG 1 cut(s) 653
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 3 cut(s) 119, 593, 778
BfaI CTAG 2 cut(s) 417, 848
BfmI CTRYAG 2 cut(s) 690, 795
BfoI RGCGCY 1 cut(s) 608
BfuAI ACCTGC 1 cut(s) 683
BglI GCCNNNNNGGC 2 cut(s) 268, 551
BlnI CCTAGG 2 cut(s) 416, 847
Bme1390I CCNGG 2 cut(s) 43, 653
Bme18I GGWCC 2 cut(s) 381, 413
BmgT120I GGNCC 4 cut(s) 44, 381, 413, 501
BmiI GGNNCC 4 cut(s) 149, 382, 1035, 1186
BmrFI CCNGG 2 cut(s) 43, 653
BmrI ACTGGG 1 cut(s) 415
BmsI GCATC 2 cut(s) 948, 1184
BmuI ACTGGG 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 816
BsaJI CCNNGG 8 cut(s) 132, 143, 416, 549, 652, 749, 811, 847
BsaWI WCCGGW 1 cut(s) 863
BsaXI ACNNNNNCTCC 6 cut(s) 617, 647, 1043, 1046, 1073, 1076
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 53, 144, 692, 835
Bse118I RCCGGY 4 cut(s) 350, 503, 665, 863
Bse1I ACTGG 1 cut(s) 410
Bse21I CCTNAGG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 8 cut(s) 132, 143, 416, 549, 652, 749, 811, 847
BseGI GGATG 8 cut(s) 84, 255, 498, 503, 713, 939, 989, 1175
BseLI CCNNNNNNNGG 5 cut(s) 32, 53, 144, 692, 835
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 1 cut(s) 1067
BseXI GCAGC 7 cut(s) 6, 9, 67, 447, 676, 725, 753
BseYI CCCAGC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 921
BshFI GGCC 9 cut(s) 41, 46, 137, 191, 503, 533, 669, 839, 1097
BshNI GGYRCC 2 cut(s) 147, 1184
BshTI ACCGGT 1 cut(s) 863
BsiSI CCGG 7 cut(s) 42, 351, 504, 666, 840, 864, 1049
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 5 cut(s) 32, 53, 144, 692, 835
BsmAI GTCTC 3 cut(s) 119, 593, 778
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 9 cut(s) 41, 46, 137, 191, 503, 533, 669, 839, 1097
Bsp1286I GDGCHC 1 cut(s) 882
Bsp1407I TGTACA 1 cut(s) 700
Bsp143I GATC 2 cut(s) 520, 765
Bsp19I CCATGG 3 cut(s) 132, 549, 749
BspANI GGCC 9 cut(s) 41, 46, 137, 191, 503, 533, 669, 839, 1097
BspFNI CGCG 1 cut(s) 921
BspLI GGNNCC 4 cut(s) 149, 382, 1035, 1186
BspMAI CTGCAG 2 cut(s) 694, 799
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 1 cut(s) 515
BspQI GCTCTTC 1 cut(s) 902
BspT107I GGYRCC 2 cut(s) 147, 1184
BsrBI CCGCTC 1 cut(s) 479
BsrFI RCCGGY 4 cut(s) 350, 503, 665, 863
BsrGI TGTACA 1 cut(s) 700
BsrI ACTGG 1 cut(s) 410
BssAI RCCGGY 4 cut(s) 350, 503, 665, 863
BssECI CCNNGG 8 cut(s) 132, 143, 416, 549, 652, 749, 811, 847
BssMI GATC 2 cut(s) 520, 765
BssNI GRCGYC 1 cut(s) 816
BssSI CACGAG 2 cut(s) 583, 590
BssT1I CCWWGG 5 cut(s) 132, 416, 549, 749, 847
Bst2BI CACGAG 2 cut(s) 583, 590
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 2 cut(s) 207, 289
Bst6I CTCTTC 2 cut(s) 902, 1086
BstACI GRCGYC 1 cut(s) 816
BstAUI TGTACA 1 cut(s) 700
BstC8I GCNNGC 8 cut(s) 48, 78, 160, 352, 739, 746, 906, 1046
BstDEI CTNAG 3 cut(s) 52, 1137, 1191
BstDSI CCRYGG 4 cut(s) 132, 143, 549, 749
BstEII GGTNACC 1 cut(s) 997
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 8 cut(s) 84, 255, 498, 503, 713, 939, 989, 1175
BstFNI CGCG 1 cut(s) 921
BstH2I RGCGCY 1 cut(s) 608
BstHHI GCGC 3 cut(s) 578, 607, 895
BstKTI GATC 2 cut(s) 523, 768
BstMAI GTCTC 3 cut(s) 119, 593, 778
BstMBI GATC 2 cut(s) 520, 765
BstMWI GCNNNNNNNGC 7 cut(s) 47, 89, 268, 309, 551, 901, 1054
BstNI CCWGG 1 cut(s) 653
BstNSI RCATGY 3 cut(s) 184, 307, 1048
BstPI GGTNACC 1 cut(s) 997
BstSCI CCNGG 2 cut(s) 41, 651
BstSFI CTRYAG 2 cut(s) 690, 795
BstUI CGCG 1 cut(s) 921
BstV1I GCAGC 7 cut(s) 6, 9, 67, 447, 676, 725, 753
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 9 cut(s) 41, 46, 137, 191, 503, 533, 669, 839, 1097
BtgI CCRYGG 4 cut(s) 132, 143, 549, 749
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 8 cut(s) 84, 255, 498, 503, 713, 939, 989, 1175
BtsI GCAGTG 4 cut(s) 175, 396, 840, 1086
BtsIMutI CAGTG 4 cut(s) 175, 396, 840, 1086
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 8 cut(s) 48, 78, 160, 352, 739, 746, 906, 1046
CfoI GCGC 3 cut(s) 578, 607, 895
Cfr10I RCCGGY 4 cut(s) 350, 503, 665, 863
Cfr13I GGNCC 4 cut(s) 44, 381, 413, 501
CseI GACGC 2 cut(s) 805, 1085
Csp6I GTAC 4 cut(s) 148, 283, 358, 701
CspAI ACCGGT 1 cut(s) 863
CviQI GTAC 4 cut(s) 148, 283, 358, 701
DdeI CTNAG 3 cut(s) 52, 1137, 1191
DpnI GATC 2 cut(s) 522, 767
DpnII GATC 2 cut(s) 520, 765
DraIII CACNNNGTG 2 cut(s) 144, 835
EaeI YGGCCR 4 cut(s) 135, 189, 531, 837
Eam1104I CTCTTC 2 cut(s) 902, 1086
EarI CTCTTC 2 cut(s) 902, 1086
EciI GGCGGA 2 cut(s) 327, 531
Eco130I CCWWGG 5 cut(s) 132, 416, 549, 749, 847
Eco147I AGGCCT 1 cut(s) 1097
Eco24I GRGCYC 1 cut(s) 882
Eco47I GGWCC 2 cut(s) 381, 413
Eco57I CTGAAG 2 cut(s) 360, 443
Eco81I CCTNAGG 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 997
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 413
EcoO65I GGTNACC 1 cut(s) 997
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 5 cut(s) 132, 416, 549, 749, 847
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 5 cut(s) 132, 416, 549, 749, 847
FaqI GGGAC 1 cut(s) 394
FauI CCCGC 6 cut(s) 97, 347, 466, 472, 694, 914
FblI GTMKAC 2 cut(s) 771, 930
FokI GGATG 8 cut(s) 71, 262, 505, 510, 720, 926, 996, 1162
FriOI GRGCYC 1 cut(s) 882
FspBI CTAG 2 cut(s) 417, 848
GlaI GCGC 3 cut(s) 577, 606, 894
GsaI CCCAGC 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 608
HaeIII GGCC 9 cut(s) 41, 46, 137, 191, 503, 533, 669, 839, 1097
HapII CCGG 7 cut(s) 42, 351, 504, 666, 840, 864, 1049
HgaI GACGC 2 cut(s) 805, 1085
HhaI GCGC 3 cut(s) 578, 607, 895
Hin1I GRCGYC 1 cut(s) 816
Hin6I GCGC 3 cut(s) 576, 605, 893
HinP1I GCGC 3 cut(s) 576, 605, 893
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HinfI GANTC 4 cut(s) 441, 586, 786, 843
HpaII CCGG 7 cut(s) 42, 351, 504, 666, 840, 864, 1049
HphI GGTGA 3 cut(s) 748, 1009, 1124
Hpy166II GTNNAC 6 cut(s) 285, 600, 756, 772, 802, 931
Hpy188I TCNGA 3 cut(s) 644, 983, 1159
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 6 cut(s) 285, 600, 756, 772, 802, 931
Hpy99I CGWCG 3 cut(s) 293, 677, 821
HpyAV CCTTC 2 cut(s) 286, 421
HpyCH4III ACNGT 2 cut(s) 207, 289
HpyCH4IV ACGT 2 cut(s) 360, 456
HpyCH4V TGCA 6 cut(s) 180, 692, 797, 823, 1084, 1175
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 89, 268, 309, 551, 901, 1054
HpyF3I CTNAG 3 cut(s) 52, 1137, 1191
HpySE526I ACGT 2 cut(s) 360, 456
Hsp92I GRCGYC 1 cut(s) 816
HspAI GCGC 3 cut(s) 576, 605, 893
KpnI GGTACC 1 cut(s) 151
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Kzo9I GATC 2 cut(s) 520, 765
LguI GCTCTTC 1 cut(s) 902
LmnI GCTCC 4 cut(s) 476, 644, 1054, 1120
Lsp1109I GCAGC 7 cut(s) 6, 9, 67, 447, 676, 725, 753
LweI GCATC 2 cut(s) 948, 1184
MaeI CTAG 2 cut(s) 417, 848
MaeII ACGT 2 cut(s) 360, 456
MaeIII GTNAC 1 cut(s) 997
MalI GATC 2 cut(s) 522, 767
MbiI CCGCTC 1 cut(s) 479
MboI GATC 2 cut(s) 520, 765
MboII GAAGA 6 cut(s) 366, 436, 610, 613, 889, 1103
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 882
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 1020
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 2 cut(s) 595, 780
Mox20I TGGCCA 1 cut(s) 137
MreI CGCCGGCG 1 cut(s) 350
MroNI GCCGGC 1 cut(s) 350
MscI TGGCCA 1 cut(s) 137
MseI TTAA 1 cut(s) 791
MslI CAYNNNNRTG 4 cut(s) 761, 944, 995, 1013
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 2 cut(s) 386, 689
MspI CCGG 7 cut(s) 42, 351, 504, 666, 840, 864, 1049
MspR9I CCNGG 2 cut(s) 43, 653
MvaI CCWGG 1 cut(s) 653
MvnI CGCG 1 cut(s) 921
MwoI GCNNNNNNNGC 7 cut(s) 47, 89, 268, 309, 551, 901, 1054
NaeI GCCGGC 1 cut(s) 352
NciI CCSGG 1 cut(s) 43
NcoI CCATGG 3 cut(s) 132, 549, 749
NdeII GATC 2 cut(s) 520, 765
NgoMIV GCCGGC 1 cut(s) 350
NlaIV GGNNCC 4 cut(s) 149, 382, 1035, 1186
NmeAIII GCCGAG 2 cut(s) 792, 901
NmuCI GTSAC 1 cut(s) 997
NspI RCATGY 3 cut(s) 184, 307, 1048
PaeI GCATGC 1 cut(s) 1048
PceI AGGCCT 1 cut(s) 1097
PciSI GCTCTTC 1 cut(s) 902
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 120
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 441, 843
PflMI CCANNNNNTGG 2 cut(s) 144, 835
PinAI ACCGGT 1 cut(s) 863
PleI GAGTC 2 cut(s) 594, 780
PpsI GAGTC 2 cut(s) 594, 780
PpuMI RGGWCCY 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 651
PspEI GGTNACC 1 cut(s) 997
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 4 cut(s) 149, 382, 1035, 1186
PspPI GGNCC 4 cut(s) 44, 381, 413, 501
PspPPI RGGWCCY 1 cut(s) 413
PstI CTGCAG 2 cut(s) 694, 799
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 4 cut(s) 149, 284, 359, 702
RsaNI GTAC 4 cut(s) 148, 283, 358, 701
RseI CAYNNNNRTG 4 cut(s) 761, 944, 995, 1013
SapI GCTCTTC 1 cut(s) 902
SaqAI TTAA 1 cut(s) 791
Sau3AI GATC 2 cut(s) 520, 765
Sau96I GGNCC 4 cut(s) 44, 381, 413, 501
SchI GAGTC 2 cut(s) 595, 780
ScrFI CCNGG 2 cut(s) 43, 653
SduI GDGCHC 1 cut(s) 882
SetI ASST 9 cut(s) 21, 278, 363, 418, 459, 697, 782, 1004, 1125
SfaNI GCATC 2 cut(s) 948, 1184
SfcI CTRYAG 2 cut(s) 690, 795
SgrAI CRCCGGYG 1 cut(s) 350
SinI GGWCC 2 cut(s) 381, 413
SmiMI CAYNNNNRTG 4 cut(s) 761, 944, 995, 1013
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SphI GCATGC 1 cut(s) 1048
Sse9I AATT 1 cut(s) 1020
SseBI AGGCCT 1 cut(s) 1097
SspMI CTAG 2 cut(s) 417, 848
StuI AGGCCT 1 cut(s) 1097
StyD4I CCNGG 2 cut(s) 41, 651
StyI CCWWGG 5 cut(s) 132, 416, 549, 749, 847
TaaI ACNGT 2 cut(s) 207, 289
TaiI ACGT 2 cut(s) 363, 459
TaqI TCGA 2 cut(s) 123, 609
TasI AATT 1 cut(s) 1020
TatI WGTACW 1 cut(s) 700
TauI GCSGC 5 cut(s) 191, 533, 581, 855, 968
TfiI GAWTC 2 cut(s) 441, 843
Tru1I TTAA 1 cut(s) 791
Tru9I TTAA 1 cut(s) 791
TscAI CASTG 4 cut(s) 182, 403, 840, 1086
TseFI GTSAC 1 cut(s) 997
TseI GCWGC 7 cut(s) 19, 22, 80, 460, 689, 713, 741
Tsp45I GTSAC 1 cut(s) 997
TspDTI ATGAA 6 cut(s) 248, 317, 356, 382, 964, 1146
TspGWI ACGGA 2 cut(s) 513, 625
TspRI CASTG 4 cut(s) 182, 403, 840, 1086
Van91I CCANNNNNTGG 2 cut(s) 144, 835
VpaK11BI GGWCC 2 cut(s) 381, 413
XagI CCTNNNNNAGG 1 cut(s) 51
XceI RCATGY 3 cut(s) 184, 307, 1048
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmaJI CCTAGG 2 cut(s) 416, 847
XmiI GTMKAC 2 cut(s) 771, 930
XspI CTAG 2 cut(s) 417, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.