Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001358

Physical Location & Seq

Genomic Coordinates Forward (+)

4290810 .. 4291331

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCAGAAGCCAATGAAGATGATATTCTCCAAGGCATCAACAGCTACAGACGATCACTGAGCTTACCAAACCTCATCAAGCACGACAAAGCCGATTGCCTAGCAGAAGAAATTGCTGATGATATACAGGACCAACCATGCAGCAGCCGAACCAATGGCGCCAACATCTCACCAACATCTGTGACTGAACTCCCCAGTCTTCCCAGTAACTTGATCAAGTGCAAAATAGATGTGAACAGCACAGTGGATGGGGTCATAATGCCAGTTTGTGTGCCCAAAGCAGTCTCAACTCTTGTGCTTACCAATTACACTAGCTCCCCGCGCTACGCAAAATTTCTGAATGATTCGAGGTTCACTGGGGTTGGAATTGGTACCGAGGACGATTGGACTGTGGTGGTTTTGGCCACAAGTACCCGAACAGGAAGCTTTGCCAATGCAGCAAACTCTTTGGTTTCGACGGTTGGCGCTGTCCATTACTTGGTCTCCTTCATGTTGGGGTTGTGGCTTATTTTGGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015291 GO:0015398 GO:0015696 GO:0016020 GO:0022804 GO:0022857 GO:0030054 GO:0034220 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

173

Amino Acids

18.55

Weight (kDa)

4.74

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g19230	PF25884	6 - 134	1.8e-51	Uncharacterized GPI-anchored protein At5g19230-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38290 AT2G38290
fragaria_vesca	FvH4_1g25720 FvH4_6g11040
malus_domestica	MD04G1162200.v1.1 MD12G1174700.v1.1 MD15G1139800.v1.1
prunus_persica	Prupe.4G283900_v2.0.a1 Prupe.4G285000_v2.0.a1 Prupe.4G285300_v2.0.a1 Prupe.4G285400_v2.0.a1 Prupe.6G281900_v2.0.a1
pyrus_communis	pycom04g14520 pycom15g12630
rosa_chinensis	RchiOBHm_Chr3g0462351 RchiOBHm_Chr3g0484601 RchiOBHm_Chr3g0484621 RchiOBHm_Chr3g0484631 RchiOBHm_Chr3g0484641
rosa_laevigata	RLG00000023210 RLG00000023213 RLG00000024864
rosa_multiflora	Rmu_co8101050.1_g000001 Rmu_sc0005467.1_g000003 Rmu_sc0005467.1_g000004 Rmu_sc0005467.1_g000010 Rmu_sc0005467.1_g000012 Rmu_sc0007199.1_g000001 Rmu_sc0007199.1_g000005 Rmu_sc0007199.1_g000006 Rmu_sc0007199.1_g000008 Rmu_sc0013434.1_g000001 Rmu_ssc0000061.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397570 Rroxscaffold_6G00397590
rosa_rugosa	Rorug03G0056100 Rorug03G0212700 Rorug03G0212800
rosa_samantha	Rh3AG114700 Rh3AG262800 Rh3AG262900 Rh3AG263100 Rh3BG117900 Rh3BG298300 Rh3BG298500 Rh3CG120700 Rh3CG295300 Rh3CG295600 Rh3CG295800 Rh3DG119900 Rh3DG291600 Rh3DG291800
rosa_wichuraiana	Rw3G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	371
AccB1I	GGYRCC	2 cut(s)	158, 371
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccII	CGCG	1 cut(s)	322
AciI	CCGC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	373, 412
AfiI	CCNNNNNNNGG	1 cut(s)	478
AluBI	AGCT	5 cut(s)	45, 63, 315, 426, 519
AluI	AGCT	5 cut(s)	45, 63, 315, 426, 519
Alw26I	GTCTC	2 cut(s)	289, 487
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	3 cut(s)	141, 144, 437
ApoI	RAATTY	1 cut(s)	332
Asp718I	GGTACC	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	161, 324, 467
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	2 cut(s)	158, 371
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	153, 156, 449
BccI	CCATC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	289, 487
BfaI	CTAG	2 cut(s)	101, 312
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	2 cut(s)	162, 468
BisI	GCNGC	3 cut(s)	142, 145, 438
BlsI	GCNGC	3 cut(s)	143, 146, 439
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	160, 373
BmrI	ACTGGG	3 cut(s)	189, 198, 366
BmsI	GCATC	1 cut(s)	45
BmuI	ACTGGG	3 cut(s)	189, 198, 366
BpiI	GAAGAC	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	31, 375
BsaXI	ACNNNNNCTCC	4 cut(s)	299, 329, 467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	4 cut(s)	195, 204, 263, 361
BseDI	CCNNGG	2 cut(s)	31, 375
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	4 cut(s)	195, 204, 263, 361
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	153, 156, 449
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	2 cut(s)	158, 371
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	2 cut(s)	289, 487
BsnI	GGCC	1 cut(s)	404
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	53, 213
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	160, 373
BspT107I	GGYRCC	2 cut(s)	158, 371
BspTNI	GGTCTC	1 cut(s)	487
BsrI	ACTGG	4 cut(s)	195, 204, 263, 361
BssECI	CCNNGG	2 cut(s)	31, 375
BssMI	GATC	2 cut(s)	53, 213
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	3 cut(s)	244, 391, 460
BstACI	GRCGYC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	322
BstH2I	RGCGCY	2 cut(s)	162, 468
BstHHI	GCGC	3 cut(s)	161, 324, 467
BstKTI	GATC	2 cut(s)	56, 216
BstMAI	GTCTC	2 cut(s)	289, 487
BstMBI	GATC	2 cut(s)	53, 213
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 321, 437
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	3 cut(s)	153, 156, 449
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	3 cut(s)	56, 249, 354
CfoI	GCGC	3 cut(s)	161, 324, 467
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	372, 411
CviAII	CATG	2 cut(s)	138, 490
CviQI	GTAC	2 cut(s)	372, 411
DdeI	CTNAG	1 cut(s)	59
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	2 cut(s)	55, 215
DpnII	GATC	2 cut(s)	53, 213
EaeI	YGGCCR	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	31
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	141, 493
FaiI	YATR	4 cut(s)	125, 139, 257, 491
FatI	CATG	2 cut(s)	137, 489
FauI	CCCGC	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	142, 145, 438
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	3 cut(s)	142, 145, 438
FspBI	CTAG	2 cut(s)	101, 312
GlaI	GCGC	3 cut(s)	160, 323, 466
GluI	GCNGC	3 cut(s)	142, 145, 438
HaeII	RGCGCY	2 cut(s)	162, 468
HaeIII	GGCC	1 cut(s)	404
HhaI	GCGC	3 cut(s)	161, 324, 467
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	141, 493
Hin6I	GCGC	3 cut(s)	159, 322, 465
HinP1I	GCGC	3 cut(s)	159, 322, 465
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	1 cut(s)	344
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	2 cut(s)	235, 354
Hpy188I	TCNGA	1 cut(s)	339
Hpy8I	GTNNAC	2 cut(s)	235, 354
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	3 cut(s)	244, 391, 460
HpyCH4V	TGCA	3 cut(s)	141, 222, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 321, 437
HpyF3I	CTNAG	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	141, 493
HspAI	GCGC	3 cut(s)	159, 322, 465
KasI	GGCGCC	1 cut(s)	158
KpnI	GGTACC	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	53, 213
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	6 cut(s)	113, 208, 217, 276, 342, 405
Lsp1109I	GCAGC	3 cut(s)	153, 156, 449
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	2 cut(s)	101, 312
MaeIII	GTNAC	2 cut(s)	181, 206
MalI	GATC	2 cut(s)	55, 215
MboI	GATC	2 cut(s)	53, 213
MboII	GAAGA	3 cut(s)	29, 119, 191
MhlI	GDGCHC	1 cut(s)	276
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	4 cut(s)	111, 304, 332, 366
MluNI	TGGCCA	1 cut(s)	404
Mly113I	GGCGCC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	3 cut(s)	83, 342, 370
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	404
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	3 cut(s)	42, 321, 437
NarI	GGCGCC	1 cut(s)	159
NdeII	GATC	2 cut(s)	53, 213
NlaIII	CATG	2 cut(s)	141, 493
NlaIV	GGNNCC	2 cut(s)	160, 373
NmuCI	GTSAC	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	3 cut(s)	143, 146, 439
PluTI	GGCGCC	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	160, 373
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	2 cut(s)	373, 412
RsaNI	GTAC	2 cut(s)	372, 411
SatI	GCNGC	3 cut(s)	142, 145, 438
Sau3AI	GATC	2 cut(s)	53, 213
Sau96I	GGNCC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	7 cut(s)	47, 65, 75, 317, 353, 428, 521
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	46
SfoI	GGCGCC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	130
Sse9I	AATT	4 cut(s)	111, 304, 332, 366
SsiI	CCGC	1 cut(s)	320
SspDI	GGCGCC	1 cut(s)	158
SspMI	CTAG	2 cut(s)	101, 312
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	244, 391, 460
TaqI	TCGA	2 cut(s)	347, 455
TasI	AATT	4 cut(s)	111, 304, 332, 366
TfiI	GAWTC	1 cut(s)	344
TscAI	CASTG	3 cut(s)	63, 249, 361
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	141, 144, 437
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	30, 478
TspRI	CASTG	3 cut(s)	63, 249, 361
Van91I	CCANNNNNTGG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	332
XspI	CTAG	2 cut(s)	101, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.