Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001358

Physical Location & Seq

Genomic Coordinates Forward (+)

24812132 .. 24812845

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGCTAGTCCTCCTCCATATAACCCCGTGCCGGTTGCGTACCAGGGAGGTGCCGGCGCGGTGCCAGTATGGTTGAACAAAGGGGACAACGCATGGCAAATGGTTGCAGCCACACTCGTCGGCCTCCAAAGCGTGCCGGGTCTTGTCATCCTGTACGGAAGCATAGTAAAAAAGAAATGGGCAGTGAACTCAGCTTTCATGGCTCTCTACGCTTTTGCGGCGGTCGTAATCTGCTGGGTGTCGTGGGCTTACAAGATGTCGTTTGGGGACAAGCTCCTACCCTTCTGGGGCAAAACTGGCCCTGCCTTGGGCCAGAAGTTCCTCATCAACCAGGCAGCTCTGCCTGCGAGCACGCACTACTTCAGCGACCACAAGACTGTGGAGACTGCTGAGATCACACCCTGGTACCCGATGGCGACCATGGTGTGGTTTCAGTGCGTGTTTGCAGCCATTACGCTGATACTGCTGGCGGGGTCGGTGCTTGGGAGGATGAACTTCAAGGCGTGGATGATGTTCGTGCCGCTTTGGCTTACATTTTCGTACACTGTCGGAGCTTTCAGCTTGTGGGGTGGAGGGTTCTTGTTCCATTGGGGTGTCATGGACTATTCCGGTGGTTATGTCATTCATCTTTCTTCTGGGATTGCTGGCTTCACCACTGCTTACTGGGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

226

Amino Acids

24.63

Weight (kDa)

9.19

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38290 AT2G38290
fragaria_vesca	FvH4_1g25720 FvH4_6g11040
malus_domestica	MD04G1162200.v1.1 MD12G1174700.v1.1 MD15G1139800.v1.1
prunus_persica	Prupe.4G283900_v2.0.a1 Prupe.4G285000_v2.0.a1 Prupe.4G285300_v2.0.a1 Prupe.4G285400_v2.0.a1 Prupe.6G281900_v2.0.a1
pyrus_communis	pycom04g14520 pycom15g12630
rosa_chinensis	RchiOBHm_Chr3g0462351 RchiOBHm_Chr3g0484601 RchiOBHm_Chr3g0484621 RchiOBHm_Chr3g0484631 RchiOBHm_Chr3g0484641
rosa_laevigata	RLG00000023210 RLG00000023213 RLG00000024864
rosa_multiflora	Rmu_co8101050.1_g000001 Rmu_sc0005467.1_g000003 Rmu_sc0005467.1_g000004 Rmu_sc0005467.1_g000010 Rmu_sc0005467.1_g000012 Rmu_sc0007199.1_g000001 Rmu_sc0007199.1_g000005 Rmu_sc0007199.1_g000006 Rmu_sc0007199.1_g000008 Rmu_sc0013434.1_g000001 Rmu_ssc0000061.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397570 Rroxscaffold_6G00397590
rosa_rugosa	Rorug03G0056100 Rorug03G0212700 Rorug03G0212800
rosa_samantha	Rh3AG114700 Rh3AG262800 Rh3AG262900 Rh3AG263100 Rh3BG117900 Rh3BG298300 Rh3BG298500 Rh3CG120700 Rh3CG295300 Rh3CG295600 Rh3CG295800 Rh3DG119900 Rh3DG291600 Rh3DG291800
rosa_wichuraiana	Rw3G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	3 cut(s)	53, 64, 408
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccII	CGCG	1 cut(s)	62
AciI	CCGC	5 cut(s)	62, 221, 224, 473, 524
AcuI	CTGAAG	1 cut(s)	349
AfaI	GTAC	4 cut(s)	44, 158, 410, 545
AfiI	CCNNNNNNNGG	5 cut(s)	34, 290, 310, 311, 429
AgsI	TTSAA	2 cut(s)	79, 502
AjnI	CCWGG	3 cut(s)	45, 333, 404
AluBI	AGCT	5 cut(s)	197, 277, 341, 557, 564
AluI	AGCT	5 cut(s)	197, 277, 341, 557, 564
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	1 cut(s)	380
AoxI	GGCC	3 cut(s)	124, 301, 313
ApeKI	GCWGC	4 cut(s)	5, 110, 338, 449
Asp718I	GGTACC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	302, 313
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	646
BaeI	ACNNNNGTAYC	2 cut(s)	392, 425
BanI	GGYRCC	3 cut(s)	53, 64, 408
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	3 cut(s)	122, 350, 461
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	3 cut(s)	47, 335, 406
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	9
BglI	GCCNNNNNGGC	1 cut(s)	529
BisI	GCNGC	6 cut(s)	6, 111, 222, 339, 450, 524
BlsI	GCNGC	6 cut(s)	7, 112, 223, 340, 451, 525
Bme1390I	CCNGG	4 cut(s)	47, 141, 335, 406
BmgT120I	GGNCC	2 cut(s)	302, 313
BmiI	GGNNCC	3 cut(s)	55, 66, 410
BmrFI	CCNGG	4 cut(s)	47, 141, 335, 406
BmrI	ACTGGG	1 cut(s)	676
BmuI	ACTGGG	1 cut(s)	676
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	46, 309, 404, 423
BsaWI	WCCGGW	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 290, 310, 311, 429
Bse118I	RCCGGY	2 cut(s)	34, 56
Bse1I	ACTGG	3 cut(s)	68, 304, 671
BseBI	CCWGG	3 cut(s)	47, 335, 406
BseDI	CCNNGG	4 cut(s)	46, 309, 404, 423
BseGI	GGATG	3 cut(s)	150, 498, 516
BseLI	CCNNNNNNNGG	5 cut(s)	34, 290, 310, 311, 429
BseMII	CTCAG	2 cut(s)	207, 384
BseNI	ACTGG	3 cut(s)	68, 304, 671
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	122, 350, 461
BseYI	CCCAGC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	126, 303, 315
BshNI	GGYRCC	3 cut(s)	53, 64, 408
BsiEI	CGRYCG	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	4 cut(s)	35, 57, 140, 612
BslFI	GGGAC	2 cut(s)	101, 284
BslI	CCNNNNNNNGG	5 cut(s)	34, 290, 310, 311, 429
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	101, 284
BsnI	GGCC	3 cut(s)	126, 303, 315
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	396
Bsp19I	CCATGG	1 cut(s)	423
BspACI	CCGC	5 cut(s)	62, 221, 224, 473, 524
BspANI	GGCC	3 cut(s)	126, 303, 315
BspCNI	CTCAG	2 cut(s)	206, 385
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	55, 66, 410
BspT107I	GGYRCC	3 cut(s)	53, 64, 408
BsrFI	RCCGGY	2 cut(s)	34, 56
BsrI	ACTGG	3 cut(s)	68, 304, 671
BssAI	RCCGGY	2 cut(s)	34, 56
BssECI	CCNNGG	4 cut(s)	46, 309, 404, 423
BssMI	GATC	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	309, 423
Bst2UI	CCWGG	3 cut(s)	47, 335, 406
Bst4CI	ACNGT	2 cut(s)	382, 550
BstC8I	GCNNGC	7 cut(s)	58, 137, 348, 352, 356, 471, 649
BstDEI	CTNAG	2 cut(s)	193, 393
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	3 cut(s)	150, 498, 516
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	1 cut(s)	396
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	8 cut(s)	132, 203, 212, 221, 300, 347, 466, 529
BstNI	CCWGG	3 cut(s)	47, 335, 406
BstSCI	CCNGG	4 cut(s)	45, 139, 333, 404
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	122, 350, 461
BsuRI	GGCC	3 cut(s)	126, 303, 315
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	3 cut(s)	150, 498, 516
BtsI	GCAGTG	2 cut(s)	192, 657
BtsIMutI	CAGTG	4 cut(s)	192, 443, 546, 657
Cac8I	GCNNGC	7 cut(s)	58, 137, 348, 352, 356, 471, 649
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	2 cut(s)	34, 56
Cfr13I	GGNCC	2 cut(s)	302, 313
Csp6I	GTAC	4 cut(s)	43, 157, 409, 544
CviAII	CATG	4 cut(s)	96, 202, 424, 601
CviQI	GTAC	4 cut(s)	43, 157, 409, 544
DdeI	CTNAG	2 cut(s)	193, 393
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	309, 423
Eco57I	CTGAAG	1 cut(s)	349
EcoRII	CCWGG	3 cut(s)	45, 333, 404
EcoT14I	CCWWGG	2 cut(s)	309, 423
ErhI	CCWWGG	2 cut(s)	309, 423
FaeI	CATG	4 cut(s)	99, 205, 427, 604
FaiI	YATR	9 cut(s)	22, 24, 73, 97, 167, 203, 425, 602, 621
FaqI	GGGAC	2 cut(s)	101, 284
FatI	CATG	4 cut(s)	95, 201, 423, 600
FauI	CCCGC	1 cut(s)	466
Fnu4HI	GCNGC	6 cut(s)	6, 111, 222, 339, 450, 524
FokI	GGATG	3 cut(s)	137, 505, 523
Fsp4HI	GCNGC	6 cut(s)	6, 111, 222, 339, 450, 524
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	6 cut(s)	6, 111, 222, 339, 450, 524
GsaI	CCCAGC	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	126, 303, 315
HapII	CCGG	4 cut(s)	35, 57, 140, 612
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	4 cut(s)	99, 205, 427, 604
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HpaII	CCGG	4 cut(s)	35, 57, 140, 612
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	2 cut(s)	190, 546
Hpy188I	TCNGA	1 cut(s)	554
Hpy8I	GTNNAC	2 cut(s)	190, 546
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	382, 550
HpyCH4V	TGCA	2 cut(s)	110, 449
HpyF10VI	GCNNNNNNNGC	8 cut(s)	132, 203, 212, 221, 300, 347, 466, 529
HpyF3I	CTNAG	2 cut(s)	193, 393
Hsp92II	CATG	4 cut(s)	99, 205, 427, 604
HspAI	GCGC	1 cut(s)	60
KpnI	GGTACC	1 cut(s)	412
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	282, 554
Lsp1109I	GCAGC	3 cut(s)	122, 350, 461
MaeI	CTAG	1 cut(s)	9
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	1 cut(s)	627
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	1 cut(s)	673
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	7 cut(s)	24, 27, 44, 137, 335, 483, 569
MroNI	GCCGGC	1 cut(s)	56
MseI	TTAA	1 cut(s)	676
MslI	CAYNNNNRTG	1 cut(s)	594
MspI	CCGG	4 cut(s)	35, 57, 140, 612
MspR9I	CCNGG	4 cut(s)	47, 141, 335, 406
MvaI	CCWGG	3 cut(s)	47, 335, 406
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	8 cut(s)	132, 203, 212, 221, 300, 347, 466, 529
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	141
NcoI	CCATGG	1 cut(s)	423
NdeII	GATC	1 cut(s)	396
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	99, 205, 427, 604
NlaIV	GGNNCC	3 cut(s)	55, 66, 410
PdiI	GCCGGC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	6 cut(s)	7, 112, 223, 340, 451, 525
Psp6I	CCWGG	3 cut(s)	45, 333, 404
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	3 cut(s)	45, 333, 404
PspN4I	GGNNCC	3 cut(s)	55, 66, 410
PspPI	GGNCC	2 cut(s)	302, 313
RsaI	GTAC	4 cut(s)	44, 158, 410, 545
RsaNI	GTAC	4 cut(s)	43, 157, 409, 544
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	676
SatI	GCNGC	6 cut(s)	6, 111, 222, 339, 450, 524
Sau3AI	GATC	1 cut(s)	396
Sau96I	GGNCC	2 cut(s)	302, 313
ScrFI	CCNGG	4 cut(s)	47, 141, 335, 406
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	6 cut(s)	55, 199, 279, 343, 559, 566
SmiMI	CAYNNNNRTG	1 cut(s)	594
Sse9I	AATT	1 cut(s)	673
SsiI	CCGC	5 cut(s)	62, 221, 224, 473, 524
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	4 cut(s)	45, 139, 333, 404
StyI	CCWWGG	2 cut(s)	309, 423
TaaI	ACNGT	2 cut(s)	382, 550
TasI	AATT	1 cut(s)	673
TauI	GCSGC	2 cut(s)	224, 526
Tru1I	TTAA	1 cut(s)	676
Tru9I	TTAA	1 cut(s)	676
TscAI	CASTG	4 cut(s)	192, 443, 553, 664
TseI	GCWGC	4 cut(s)	5, 110, 338, 449
TspDTI	ATGAA	3 cut(s)	190, 509, 617
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	4 cut(s)	192, 443, 553, 664
Van91I	CCANNNNNTGG	1 cut(s)	429
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.