RchiOBHm_Chr3g0484621

Ammonium transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001358
Physical Location & Seq
Forward (+)
31013277 .. 31013918
642 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44933

Sequence Viewer

Length: 642 bp
ATGGCGGCGTATGAGGCAACTGGCGGAGCGAACCCGGACTGGCTGAACAAAGGTGACAACGCATGGCAGATGACCTCCGCCACGCTGGTGGGTCTCCAGAGCGTGCCGGGGCTCGTCATCCTCTACGGGAGCATAGTGAAGAAGAAGTGGGCGGTAAACTCCGCTTTCATGGCCCTCTACGCCTTCGCCGCCGTCTTGATCTGCTGGGTGACGTGGGCCTACAAGATGTCGTTCGGGGAGAAGCTGCTGCCGTTTTGGGGCAAGGCCGGGCCTGCCTTAGGGCAGAAGTTTCTGCTCAAGCAGGCTGCCATCCCCGCCTCCACACACTACCACGCCAACGGCGATCTCGAGACTGCCATGGCCACGCCGTGGTACCCTATGGCGAGCATGGTGTACTTTCACTGCATGTTTGCGGCCATAACACCGATACTGTTGGCAGGGTCGGTGCTGGGGAGAATGAACTTCAAGGCGTGGATGATGTTCGTGCCTCTGTGGCTGACCTTCTCGTACACCGTCGGTGCGTTTAGCATGTGGGGCGGAGGGTTTTTATTTCATTGGGGAGTTATGGACTACGCCGGCGGGTACGTCATTCATCTTTCTTCAGGGACCGCTGGTTTCATCACTGCTTACTGGGTACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ammonium_transp

Protein Analysis

213

Amino Acids

23.42

Weight (kDa)

9.19

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 21 - 211 1.7e-25 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AccB7I CCANNNNNTGG 1 cut(s) 369
AcoI YGGCCR 2 cut(s) 360, 414
AcuI CTGAAG 1 cut(s) 585
AdeI CACNNNGTG 1 cut(s) 369
AfaI GTAC 5 cut(s) 374, 395, 509, 584, 636
AfiI CCNNNNNNNGG 3 cut(s) 257, 278, 369
AgsI TTSAA 1 cut(s) 466
AjiI CACGTC 1 cut(s) 213
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 98, 344
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 6 cut(s) 171, 216, 264, 269, 360, 414
ApeKI GCWGC 3 cut(s) 244, 247, 305
Asp718I GGTACC 1 cut(s) 372
AspS9I GGNCC 4 cut(s) 172, 216, 269, 606
AsuC2I CCSGG 3 cut(s) 35, 108, 268
AsuHPI GGTGA 2 cut(s) 65, 220
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 606
AxyI CCTNAGG 1 cut(s) 277
BalI TGGCCA 1 cut(s) 362
BanI GGYRCC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 231, 234, 292
BccI CCATC 1 cut(s) 317
BceAI ACGGC 4 cut(s) 176, 235, 352, 355
BcnI CCSGG 3 cut(s) 35, 108, 268
BcoDI GTCTC 2 cut(s) 98, 344
BglI GCCNNNNNGGC 1 cut(s) 493
BisI GCNGC 6 cut(s) 6, 189, 245, 248, 306, 414
BlsI GCNGC 6 cut(s) 7, 190, 246, 249, 307, 415
Bme1390I CCNGG 3 cut(s) 35, 108, 268
Bme18I GGWCC 1 cut(s) 606
BmeT110I CYCGRG 1 cut(s) 347
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 4 cut(s) 172, 216, 269, 606
BmiI GGNNCC 2 cut(s) 374, 607
BmrFI CCNGG 3 cut(s) 35, 108, 268
BmrI ACTGGG 1 cut(s) 640
BmuI ACTGGG 1 cut(s) 640
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 3 cut(s) 35, 108, 268
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 107, 357, 368
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 278, 369
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 3 cut(s) 25, 44, 635
Bse21I CCTNAGG 1 cut(s) 277
BseDI CCNNGG 3 cut(s) 107, 357, 368
BseGI GGATG 3 cut(s) 117, 309, 480
BseLI CCNNNNNNNGG 3 cut(s) 257, 278, 369
BseNI ACTGG 3 cut(s) 25, 44, 635
BseXI GCAGC 3 cut(s) 231, 234, 292
BseYI CCCAGC 2 cut(s) 204, 448
BshFI GGCC 6 cut(s) 173, 218, 266, 271, 362, 416
BshNI GGYRCC 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 4 cut(s) 35, 107, 267, 576
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 3 cut(s) 257, 278, 369
BsmAI GTCTC 2 cut(s) 98, 344
BsmFI GGGAC 1 cut(s) 619
BsnI GGCC 6 cut(s) 173, 218, 266, 271, 362, 416
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 198, 343
Bsp19I CCATGG 1 cut(s) 357
BspANI GGCC 6 cut(s) 173, 218, 266, 271, 362, 416
BspLI GGNNCC 2 cut(s) 374, 607
BspT107I GGYRCC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 3 cut(s) 25, 44, 635
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 3 cut(s) 107, 357, 368
BssMI GATC 2 cut(s) 198, 343
BssT1I CCWWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 432, 514
BstC8I GCNNGC 5 cut(s) 104, 273, 303, 385, 577
BstDEI CTNAG 1 cut(s) 277
BstDSI CCRYGG 2 cut(s) 357, 368
BstENI CCTNNNNNAGG 1 cut(s) 276
BstF5I GGATG 3 cut(s) 117, 309, 480
BstKTI GATC 2 cut(s) 201, 346
BstMAI GTCTC 2 cut(s) 98, 344
BstMBI GATC 2 cut(s) 198, 343
BstMWI GCNNNNNNNGC 8 cut(s) 14, 170, 179, 188, 272, 314, 493, 534
BstNSI RCATGY 2 cut(s) 409, 532
BstSCI CCNGG 3 cut(s) 33, 106, 266
BstV1I GCAGC 3 cut(s) 231, 234, 292
BstXI CCANNNNNNTGG 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 277
BsuRI GGCC 6 cut(s) 173, 218, 266, 271, 362, 416
BtgI CCRYGG 2 cut(s) 357, 368
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 3 cut(s) 117, 309, 480
BtsI GCAGTG 2 cut(s) 400, 621
BtsIMutI CAGTG 2 cut(s) 400, 621
Cac8I GCNNGC 5 cut(s) 104, 273, 303, 385, 577
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 4 cut(s) 172, 216, 269, 606
Csp6I GTAC 5 cut(s) 373, 394, 508, 583, 635
CviAII CATG 6 cut(s) 63, 169, 358, 388, 406, 529
CviQI GTAC 5 cut(s) 373, 394, 508, 583, 635
DdeI CTNAG 1 cut(s) 277
DpnI GATC 2 cut(s) 200, 345
DpnII GATC 2 cut(s) 198, 343
DraIII CACNNNGTG 1 cut(s) 369
EaeI YGGCCR 2 cut(s) 360, 414
EciI GGCGGA 3 cut(s) 39, 67, 552
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 606
Eco57I CTGAAG 1 cut(s) 585
Eco81I CCTNAGG 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 347
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 6 cut(s) 66, 172, 361, 391, 409, 532
FaqI GGGAC 1 cut(s) 619
FatI CATG 6 cut(s) 62, 168, 357, 387, 405, 528
FauI CCCGC 2 cut(s) 322, 572
Fnu4HI GCNGC 6 cut(s) 6, 189, 245, 248, 306, 414
FokI GGATG 3 cut(s) 104, 296, 487
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 6 cut(s) 6, 189, 245, 248, 306, 414
GluI GCNGC 6 cut(s) 6, 189, 245, 248, 306, 414
GsaI CCCAGC 2 cut(s) 208, 452
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 6 cut(s) 173, 218, 266, 271, 362, 416
HapII CCGG 4 cut(s) 35, 107, 267, 576
Hin1II CATG 6 cut(s) 66, 172, 361, 391, 409, 532
HpaII CCGG 4 cut(s) 35, 107, 267, 576
HphI GGTGA 2 cut(s) 65, 220
Hpy166II GTNNAC 3 cut(s) 157, 394, 510
Hpy188III TCNNGA 4 cut(s) 97, 196, 347, 349
Hpy8I GTNNAC 3 cut(s) 157, 394, 510
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 2 cut(s) 193, 511
HpyCH4III ACNGT 2 cut(s) 432, 514
HpyCH4IV ACGT 3 cut(s) 212, 585, 637
HpyCH4V TGCA 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 170, 179, 188, 272, 314, 493, 534
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 3 cut(s) 212, 585, 637
Hsp92II CATG 6 cut(s) 66, 172, 361, 391, 409, 532
KpnI GGTACC 1 cut(s) 376
KroI GCCGGC 1 cut(s) 575
KroNI GCCGGC 1 cut(s) 577
Kzo9I GATC 2 cut(s) 198, 343
LmnI GCTCC 2 cut(s) 26, 129
Lsp1109I GCAGC 3 cut(s) 231, 234, 292
MaeII ACGT 3 cut(s) 212, 585, 637
MaeIII GTNAC 2 cut(s) 53, 208
MalI GATC 2 cut(s) 200, 345
MboI GATC 2 cut(s) 198, 343
MboII GAAGA 3 cut(s) 151, 154, 591
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 362
MluNI TGGCCA 1 cut(s) 362
MnlI CCTC 7 cut(s) 7, 85, 131, 185, 328, 498, 533
Mox20I TGGCCA 1 cut(s) 362
MreI CGCCGGCG 1 cut(s) 575
MroNI GCCGGC 1 cut(s) 575
MscI TGGCCA 1 cut(s) 362
MseI TTAA 1 cut(s) 640
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 4 cut(s) 35, 107, 267, 576
MspR9I CCNGG 3 cut(s) 35, 108, 268
MwoI GCNNNNNNNGC 8 cut(s) 14, 170, 179, 188, 272, 314, 493, 534
NaeI GCCGGC 1 cut(s) 577
NciI CCSGG 3 cut(s) 35, 108, 268
NcoI CCATGG 1 cut(s) 357
NdeII GATC 2 cut(s) 198, 343
NgoMIV GCCGGC 1 cut(s) 575
NlaIII CATG 6 cut(s) 66, 172, 361, 391, 409, 532
NlaIV GGNNCC 2 cut(s) 374, 607
NmuCI GTSAC 2 cut(s) 53, 208
NspI RCATGY 2 cut(s) 409, 532
OliI CACNNNNGTG 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 347
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 345
PdiI GCCGGC 1 cut(s) 577
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 6 cut(s) 7, 190, 246, 249, 307, 415
PspFI CCCAGC 2 cut(s) 204, 448
PspN4I GGNNCC 2 cut(s) 374, 607
PspPI GGNCC 4 cut(s) 172, 216, 269, 606
RsaI GTAC 5 cut(s) 374, 395, 509, 584, 636
RsaNI GTAC 5 cut(s) 373, 394, 508, 583, 635
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 640
SatI GCNGC 6 cut(s) 6, 189, 245, 248, 306, 414
Sau3AI GATC 2 cut(s) 198, 343
Sau96I GGNCC 4 cut(s) 172, 216, 269, 606
ScrFI CCNGG 3 cut(s) 35, 108, 268
SduI GDGCHC 1 cut(s) 114
SetI ASST 7 cut(s) 55, 77, 215, 246, 503, 588, 640
Sfr274I CTCGAG 1 cut(s) 347
SgrAI CRCCGGYG 1 cut(s) 575
SinI GGWCC 1 cut(s) 606
SlaI CTCGAG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 296, 347
SmoI CTYRAG 2 cut(s) 296, 347
StyD4I CCNGG 3 cut(s) 33, 106, 266
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 432, 514
TaiI ACGT 3 cut(s) 215, 588, 640
TaqI TCGA 1 cut(s) 348
TatI WGTACW 1 cut(s) 393
TauI GCSGC 3 cut(s) 8, 191, 416
Tru1I TTAA 1 cut(s) 640
Tru9I TTAA 1 cut(s) 640
TscAI CASTG 2 cut(s) 407, 628
TseFI GTSAC 2 cut(s) 53, 208
TseI GCWGC 3 cut(s) 244, 247, 305
Tsp45I GTSAC 2 cut(s) 53, 208
TspDTI ATGAA 5 cut(s) 157, 473, 542, 581, 607
TspRI CASTG 2 cut(s) 407, 628
Van91I CCANNNNNTGG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 606
XagI CCTNNNNNAGG 1 cut(s) 276
XceI RCATGY 2 cut(s) 409, 532
XhoI CTCGAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.