pycom04g14520

ammonium transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
17409762 .. 17412586
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14520.1

Sequence Viewer

Length: 1473 bp
ATGGCCGGCATAACTAATGCTTATAGTGTAGAAACCCCGGCGGTTCCGTCGTGGCTAAACAAAGGAGACAACGCATGGCAACTCACAGCCGCCACTTTTGTTGGGTTACAAAGCATGCCGGGCCTAGTGATCCTCTACGCCAGCATAGTCAAGAAGAAATGGGCAGTAAACTCAGCCTTCATGGCCCTCTACGCCTTCGCCGCCGTGCTCATCTGTTGGGTCCTCGTAGGCTACCGTATGGCCTTCGGGGACCAGCTCCTCCCGTTTTGGGCTAAAGGAGCACCCTCTCTAGGCCAAAAGTTCCTCATTAGCCAAGCCAAAGTGCCCAAAAGCACTCACTTTCGTGACGATGGATCGATTGAGACCCAAACGGTTGAGCCATTTTACCCCATGGCATCACTCGTCTACTTTCAGTTCACTTTTGCAGCTATTACTCTTATTTTGTTAGCAGGGTCTGTTCTTGGCCGCATGAACATCAAGGCTTGGATGGCTTTTGTCCCTCTTTGGCTTCTATTTTCATACACTGTTGGAGCCTTTAGTCTTTGGGGTGGTGGCTTCCTCTATCATTGGGGTGTAATTGACTACTCCGGTGGTTATGTCATCCATCTCTCCTCGGGCATCGCAGGTTTCACCGCCGCTTATTGGGTTGGTCCAAGGTTGAAGAGTGACAGGGAGAGGTTTCCACCAAACAACGTGTTGCTAATGCTTTGTGGTGCTGGGATGCTGTGGATGGGCTGGTCAGGTTTCAACGGCGGGGCCCCTTATGCTGCAAACGTTGTTGCTCCAATAGCAGTGTTGAACACAAACATCTGTGCAGCCACCAGCCTTCTTGTATGGACGTCTCTCGACGTTGTGTTCTTCGGCAAGCCGTCGGTGATCGGAGCTGTTCAGGGCATGATGACGGGGCTCGTATGCATCACACCTGGGGCGGGGTTGGTGCAGTCTTGGGCGGCTATTCTGATGGGAATGCTTTCTGGTAGCATTCCATGGGTCTCCATGATGGTCCTACACAAAAAGTCTACCCTATTGCAAAAGGTGGATGACACCCTAGGGGTATTTCATACACATGCAGTGGCAGGGCTTTTAGGGGGACTGCTAACTGGGCTTCTGGCAGAGCCAGCACTTTGCAGGCTTATGCTGCCTGTTGGCAACAGCAGAGGTGCATTCTACGGTGGCAGTGGAGGGATGCAATTTCTGAAACAATTGGTTGCTGCCATGTTTGTGATTGCTTGGAACATAGTCTCCACCACTATCATACTTCTGGCAATTAGGGTTTTCATACCTCTGAGAATGCCGGAGGAGCAGCTCATCATTGGAGATGACGCCGTTCACGGAGAAGAGGCTTACGCTCTTTGGGGCGACGGAGAAAAATATGACCCGACAAGACATGGTTGGAATACATCGGTGTATGGTGAAGAAATGGCACCGTCGCCGTATATCAATGGTGCAAGAGGTGTGACCATTAACTTGTAA

Protein Analysis

491

Amino Acids

52.84

Weight (kDa)

8.46

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 25 - 449 6.1e-79 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 842
Acc36I ACCTGC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 1423
AccI GTMKAC 2 cut(s) 405, 1019
AciI CCGC 9 cut(s) 41, 90, 201, 466, 633, 636, 753, 929, 950
AclI AACGTT 1 cut(s) 774
AclWI GGATC 2 cut(s) 124, 361
AcoI YGGCCR 2 cut(s) 3, 463
AcyI GRCGYC 2 cut(s) 839, 1323
AfiI CCNNNNNNNGG 4 cut(s) 268, 290, 642, 929
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 3 cut(s) 661, 748, 799
AjnI CCWGG 1 cut(s) 922
AleI CACNNNNGTG 1 cut(s) 342
AloI GAACNNNNNNTCC 2 cut(s) 1226, 1258
AluBI AGCT 4 cut(s) 256, 428, 884, 1306
AluI AGCT 4 cut(s) 256, 428, 884, 1306
Alw21I GWGCWC 2 cut(s) 210, 283
Alw26I GTCTC 5 cut(s) 60, 356, 846, 997, 1246
AlwI GGATC 2 cut(s) 124, 361
AlwNI CAGNNNCTG 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 613
AoxI GGCC 7 cut(s) 3, 121, 183, 240, 292, 463, 756
ApaI GGGCCC 1 cut(s) 760
ApeKI GCWGC 6 cut(s) 425, 767, 815, 1138, 1211, 1303
Asp700I GAANNNNTTC 1 cut(s) 970
AspA2I CCTAGG 1 cut(s) 1048
AspS9I GGNCC 8 cut(s) 121, 184, 220, 250, 650, 756, 757, 1003
AsuC2I CCSGG 2 cut(s) 38, 120
AsuHPI GGTGA 3 cut(s) 622, 886, 1424
AvaI CYCGRG 1 cut(s) 613
AvaII GGWCC 4 cut(s) 220, 250, 650, 1003
AvrII CCTAGG 1 cut(s) 1048
BaeGI GKGCMC 2 cut(s) 327, 760
BanI GGYRCC 1 cut(s) 1423
BanII GRGCYC 2 cut(s) 760, 909
Bbv12I GWGCWC 2 cut(s) 210, 283
BbvI GCAGC 6 cut(s) 437, 754, 827, 1125, 1198, 1315
BccI CCATC 6 cut(s) 344, 481, 612, 724, 955, 994
BceAI ACGGC 5 cut(s) 188, 766, 853, 1310, 1417
BciT130I CCWGG 1 cut(s) 924
BcnI CCSGG 2 cut(s) 38, 120
BcoDI GTCTC 5 cut(s) 60, 356, 846, 997, 1246
BfaI CTAG 3 cut(s) 125, 290, 1049
BfuAI ACCTGC 1 cut(s) 614
BglI GCCNNNNNGGC 1 cut(s) 182
BlnI CCTAGG 1 cut(s) 1048
Bme1390I CCNGG 3 cut(s) 38, 120, 924
Bme18I GGWCC 4 cut(s) 220, 250, 650, 1003
BmeT110I CYCGRG 1 cut(s) 613
BmgT120I GGNCC 8 cut(s) 121, 184, 220, 250, 650, 756, 757, 1003
BmiI GGNNCC 8 cut(s) 45, 221, 251, 532, 757, 758, 759, 1425
BmrFI CCNGG 3 cut(s) 38, 120, 924
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 5 cut(s) 404, 627, 711, 924, 1176
BmuI ACTGGG 1 cut(s) 1110
BpuMI CCSGG 2 cut(s) 38, 120
Bsa29I ATCGAT 1 cut(s) 356
BsaHI GRCGYC 2 cut(s) 839, 1323
BsaI GGTCTC 2 cut(s) 356, 997
BsaJI CCNNGG 7 cut(s) 36, 390, 612, 653, 923, 986, 1048
BsaWI WCCGGW 1 cut(s) 587
BsaXI ACNNNNNCTCC 2 cut(s) 1226, 1256
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 290, 642, 929
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 1105
BseBI CCWGG 1 cut(s) 924
BseCI ATCGAT 1 cut(s) 356
BseDI CCNNGG 7 cut(s) 36, 390, 612, 653, 923, 986, 1048
BseGI GGATG 6 cut(s) 492, 600, 726, 735, 1045, 1191
BseLI CCNNNNNNNGG 4 cut(s) 268, 290, 642, 929
BseMII CTCAG 2 cut(s) 186, 1277
BseNI ACTGG 1 cut(s) 1105
BseRI GAGGAG 3 cut(s) 248, 601, 1313
BseSI GKGCMC 2 cut(s) 327, 760
BseXI GCAGC 6 cut(s) 437, 754, 827, 1125, 1198, 1315
BseYI CCCAGC 1 cut(s) 716
BsgI GTGCAG 2 cut(s) 834, 959
BshFI GGCC 7 cut(s) 5, 123, 185, 242, 294, 465, 758
BshNI GGYRCC 1 cut(s) 1423
BshVI ATCGAT 1 cut(s) 356
BsiHKAI GWGCWC 2 cut(s) 210, 283
BsiHKCI CYCGRG 1 cut(s) 613
BsiSI CCGG 5 cut(s) 6, 38, 119, 588, 1295
BslFI GGGAC 3 cut(s) 263, 482, 1104
BslI CCNNNNNNNGG 4 cut(s) 268, 290, 642, 929
BsmAI GTCTC 5 cut(s) 60, 356, 846, 997, 1246
BsmBI CGTCTC 1 cut(s) 846
BsmFI GGGAC 3 cut(s) 263, 482, 1104
BsmI GAATGC 4 cut(s) 972, 981, 1163, 1296
BsnI GGCC 7 cut(s) 5, 123, 185, 242, 294, 465, 758
Bso31I GGTCTC 2 cut(s) 356, 997
BsoBI CYCGRG 1 cut(s) 613
Bsp120I GGGCCC 1 cut(s) 756
Bsp1286I GDGCHC 5 cut(s) 210, 283, 327, 760, 909
Bsp143I GATC 3 cut(s) 129, 353, 876
Bsp19I CCATGG 2 cut(s) 390, 986
BspACI CCGC 9 cut(s) 41, 90, 201, 466, 633, 636, 753, 929, 950
BspANI GGCC 7 cut(s) 5, 123, 185, 242, 294, 465, 758
BspCNI CTCAG 2 cut(s) 185, 1278
BspDI ATCGAT 1 cut(s) 356
BspLI GGNNCC 8 cut(s) 45, 221, 251, 532, 757, 758, 759, 1425
BspMI ACCTGC 1 cut(s) 614
BspPI GGATC 2 cut(s) 124, 361
BspT107I GGYRCC 1 cut(s) 1423
BspTNI GGTCTC 2 cut(s) 356, 997
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 1105
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 7 cut(s) 36, 390, 612, 653, 923, 986, 1048
BssMI GATC 3 cut(s) 129, 353, 876
BssNI GRCGYC 2 cut(s) 839, 1323
BssT1I CCWWGG 4 cut(s) 390, 653, 986, 1048
Bst2UI CCWGG 1 cut(s) 924
Bst4CI ACNGT 5 cut(s) 236, 373, 526, 1172, 1428
Bst6I CTCTTC 2 cut(s) 656, 1332
BstACI GRCGYC 2 cut(s) 839, 1323
BstC8I GCNNGC 6 cut(s) 7, 116, 142, 866, 1119, 1130
BstDEI CTNAG 2 cut(s) 172, 1286
BstDSI CCRYGG 2 cut(s) 390, 986
BstF5I GGATG 6 cut(s) 492, 600, 726, 735, 1045, 1191
BstKTI GATC 3 cut(s) 132, 356, 879
BstMAI GTCTC 5 cut(s) 60, 356, 846, 997, 1246
BstMBI GATC 3 cut(s) 129, 353, 876
BstNI CCWGG 1 cut(s) 924
BstNSI RCATGY 2 cut(s) 118, 1070
BstSCI CCNGG 3 cut(s) 36, 118, 922
BstSLI GKGCMC 2 cut(s) 327, 760
BstV1I GCAGC 6 cut(s) 437, 754, 827, 1125, 1198, 1315
Bsu15I ATCGAT 1 cut(s) 356
BsuRI GGCC 7 cut(s) 5, 123, 185, 242, 294, 465, 758
BsuTUI ATCGAT 1 cut(s) 356
BtgI CCRYGG 2 cut(s) 390, 986
BtgZI GCGATG 1 cut(s) 604
BtsCI GGATG 6 cut(s) 492, 600, 726, 735, 1045, 1191
BtsI GCAGTG 3 cut(s) 798, 1077, 1183
BtsIMutI CAGTG 4 cut(s) 522, 798, 1077, 1183
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 6 cut(s) 7, 116, 142, 866, 1119, 1130
CaiI CAGNNNCTG 1 cut(s) 455
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 8 cut(s) 121, 184, 220, 250, 650, 756, 757, 1003
ClaI ATCGAT 1 cut(s) 356
CseI GACGC 1 cut(s) 1331
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
DdeI CTNAG 2 cut(s) 172, 1286
DpnI GATC 3 cut(s) 131, 355, 878
DpnII GATC 3 cut(s) 129, 353, 876
EaeI YGGCCR 2 cut(s) 3, 463
Eam1104I CTCTTC 2 cut(s) 656, 1332
EarI CTCTTC 2 cut(s) 656, 1332
Eco130I CCWWGG 4 cut(s) 390, 653, 986, 1048
Eco24I GRGCYC 2 cut(s) 760, 909
Eco31I GGTCTC 2 cut(s) 356, 997
Eco47I GGWCC 4 cut(s) 220, 250, 650, 1003
Eco88I CYCGRG 1 cut(s) 613
EcoO109I RGGNCCY 3 cut(s) 220, 756, 757
EcoRII CCWGG 1 cut(s) 922
EcoT14I CCWWGG 4 cut(s) 390, 653, 986, 1048
EcoT22I ATGCAT 1 cut(s) 917
EcoT38I GRGCYC 2 cut(s) 760, 909
ErhI CCWWGG 4 cut(s) 390, 653, 986, 1048
Esp3I CGTCTC 1 cut(s) 846
FaqI GGGAC 3 cut(s) 263, 482, 1104
FauI CCCGC 2 cut(s) 746, 922
FblI GTMKAC 2 cut(s) 405, 1019
FokI GGATG 6 cut(s) 499, 587, 733, 742, 1052, 1198
FriOI GRGCYC 2 cut(s) 760, 909
FspBI CTAG 3 cut(s) 125, 290, 1049
GsaI CCCAGC 1 cut(s) 720
HaeIII GGCC 7 cut(s) 5, 123, 185, 242, 294, 465, 758
HapII CCGG 5 cut(s) 6, 38, 119, 588, 1295
HgaI GACGC 1 cut(s) 1331
Hin1I GRCGYC 2 cut(s) 839, 1323
HpaII CCGG 5 cut(s) 6, 38, 119, 588, 1295
HphI GGTGA 3 cut(s) 622, 886, 1424
Hpy166II GTNNAC 5 cut(s) 169, 406, 417, 1020, 1330
Hpy188I TCNGA 4 cut(s) 881, 960, 1197, 1287
Hpy188III TCNNGA 3 cut(s) 151, 344, 845
Hpy8I GTNNAC 5 cut(s) 169, 406, 417, 1020, 1330
Hpy99I CGWCG 5 cut(s) 52, 851, 874, 1364, 1432
HpyAV CCTTC 4 cut(s) 187, 205, 253, 836
HpyCH4III ACNGT 5 cut(s) 236, 373, 526, 1172, 1428
HpyCH4IV ACGT 4 cut(s) 693, 774, 839, 849
HpyF3I CTNAG 2 cut(s) 172, 1286
HpySE526I ACGT 4 cut(s) 693, 774, 839, 849
Hsp92I GRCGYC 2 cut(s) 839, 1323
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 3 cut(s) 129, 353, 876
LmnI GCTCC 6 cut(s) 261, 278, 530, 787, 881, 1300
Lsp1109I GCAGC 6 cut(s) 437, 754, 827, 1125, 1198, 1315
LweI GCATC 5 cut(s) 404, 627, 711, 924, 1176
MaeI CTAG 3 cut(s) 125, 290, 1049
MaeII ACGT 4 cut(s) 693, 774, 839, 849
MaeIII GTNAC 4 cut(s) 105, 344, 665, 1456
MalI GATC 3 cut(s) 131, 355, 878
MboI GATC 3 cut(s) 129, 353, 876
MboII GAAGA 5 cut(s) 166, 673, 850, 1349, 1427
MfeI CAATTG 1 cut(s) 1202
MhlI GDGCHC 5 cut(s) 210, 283, 327, 760, 909
MluCI AATT 4 cut(s) 576, 1190, 1202, 1266
MmeI TCCRAC 2 cut(s) 508, 1373
Mph1103I ATGCAT 1 cut(s) 917
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 970
MseI TTAA 1 cut(s) 1464
MslI CAYNNNNRTG 4 cut(s) 342, 570, 1065, 1220
MspI CCGG 5 cut(s) 6, 38, 119, 588, 1295
MspR9I CCNGG 3 cut(s) 38, 120, 924
MunI CAATTG 1 cut(s) 1202
Mva1269I GAATGC 4 cut(s) 972, 981, 1163, 1296
MvaI CCWGG 1 cut(s) 924
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 2 cut(s) 38, 120
NcoI CCATGG 2 cut(s) 390, 986
NdeII GATC 3 cut(s) 129, 353, 876
NgoMIV GCCGGC 1 cut(s) 5
NlaIV GGNNCC 8 cut(s) 45, 221, 251, 532, 757, 758, 759, 1425
NmuCI GTSAC 3 cut(s) 344, 665, 1456
NsiI ATGCAT 1 cut(s) 917
NspI RCATGY 2 cut(s) 118, 1070
OliI CACNNNNGTG 1 cut(s) 342
PaeI GCATGC 1 cut(s) 118
PctI GAATGC 4 cut(s) 972, 981, 1163, 1296
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 970
PpuMI RGGWCCY 1 cut(s) 220
Psp1406I AACGTT 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 922
PspFI CCCAGC 1 cut(s) 716
PspGI CCWGG 1 cut(s) 922
PspN4I GGNNCC 8 cut(s) 45, 221, 251, 532, 757, 758, 759, 1425
PspOMI GGGCCC 1 cut(s) 756
PspPI GGNCC 8 cut(s) 121, 184, 220, 250, 650, 756, 757, 1003
PspPPI RGGWCCY 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 455
RseI CAYNNNNRTG 4 cut(s) 342, 570, 1065, 1220
SaqAI TTAA 1 cut(s) 1464
Sau3AI GATC 3 cut(s) 129, 353, 876
Sau96I GGNCC 8 cut(s) 121, 184, 220, 250, 650, 756, 757, 1003
ScrFI CCNGG 3 cut(s) 38, 120, 924
SduI GDGCHC 5 cut(s) 210, 283, 327, 760, 909
SfaNI GCATC 5 cut(s) 404, 627, 711, 924, 1176
SinI GGWCC 4 cut(s) 220, 250, 650, 1003
SmiMI CAYNNNNRTG 4 cut(s) 342, 570, 1065, 1220
SphI GCATGC 1 cut(s) 118
Sse9I AATT 4 cut(s) 576, 1190, 1202, 1266
SsiI CCGC 9 cut(s) 41, 90, 201, 466, 633, 636, 753, 929, 950
SspMI CTAG 3 cut(s) 125, 290, 1049
StyD4I CCNGG 3 cut(s) 36, 118, 922
StyI CCWWGG 4 cut(s) 390, 653, 986, 1048
TaaI ACNGT 5 cut(s) 236, 373, 526, 1172, 1428
TaiI ACGT 4 cut(s) 696, 777, 842, 852
TaqI TCGA 2 cut(s) 356, 846
TasI AATT 4 cut(s) 576, 1190, 1202, 1266
TauI GCSGC 5 cut(s) 92, 203, 468, 638, 953
Tru1I TTAA 1 cut(s) 1464
Tru9I TTAA 1 cut(s) 1464
TscAI CASTG 4 cut(s) 529, 798, 1077, 1183
TseFI GTSAC 3 cut(s) 344, 665, 1456
TseI GCWGC 6 cut(s) 425, 767, 815, 1138, 1211, 1303
Tsp45I GTSAC 3 cut(s) 344, 665, 1456
TspDTI ATGAA 5 cut(s) 169, 485, 507, 1049, 1267
TspGWI ACGGA 3 cut(s) 36, 1347, 1377
TspRI CASTG 4 cut(s) 529, 798, 1077, 1183
VpaK11BI GGWCC 4 cut(s) 220, 250, 650, 1003
XceI RCATGY 2 cut(s) 118, 1070
XmaJI CCTAGG 1 cut(s) 1048
XmiI GTMKAC 2 cut(s) 405, 1019
XmnI GAANNNNTTC 1 cut(s) 970
XspI CTAG 3 cut(s) 125, 290, 1049
ZraI GACGTC 1 cut(s) 840
Zsp2I ATGCAT 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.