Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001358

Physical Location & Seq

Genomic Coordinates Forward (+)

9278529 .. 9281208

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G009700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGCGACCACTACTAGTTTTGCCTACAGTGCAGTCTCCCCGGCAGTCCCAGAGTGGCTAAACAAAGGCGATAACGCCTGGCAGCTCACCGCAGCCACATTGGTTGGGCTGCAGAGCATGCCGGGCCTCATCATCCTCTACGCCAGCATAGTCAAGAAGAAATGGGCCGTCAACTCAGCCTTCATGGCCCTCTACGCCTTCGCCGCCGTCCTAATTTGTTGGGTGCTCGTCGGCTACCGCATGGCCTTTGGAGACCAGCTCCTTCCATTTTGGGGTAAGGGAGCTCCGGCCCTCGGACAGAGATTTCTGATCCACCGAGCCAAGGTACCCGAAAGCAAGCATTTATCGAGCCCGACGGTAGAGCCGTTTTACCCTATGGCGACGCTTGTGTACTTTCAGTTCACTTTTGCTGCCATCACGTTGATTTTGTTAGCTGGGTCGGTTCTTGGGCGCATGAACATTAAGGCTTGGATGGCTTTTGTCCCTCTTTGGCTCATCTTTTCTTACACTGTTGGGGCCTTTAGTCTCTGGGGTGGAGGGTTCCTCTATCATTGGGGTGTCATTGACTACTCCGGTGGTTATGTTATCCACCTCTCCTCAGGCATCGCGGGTTTCACGGCGGCTTATTGGGTTGGTCCAAGGTTGAAGAGTGATAGGGAGAGGTTTCCCCCAAACAACGTTTTGCTTATGCTCGCCGGAGCCGGGCTACTGTGGATGGGGTGGTCGGGTTTCAACGGTGGAGCACCATATGCTGCAAACATCAACGCTTCAATTGCGGTGTTGAACACAAACATATGTGCTGCCACGAGCCTTCTCGTCTGGACTTCTCTAGATGTCATGTTCTTTGGAAAGCCATCGGTGATCGGAGCCGTTCAAGGAATGATGACGGGACTCGTGTGCATTACGCCAGGAGCAGGATTGGTGCAATCGTGGGCGGCTATAGTGATGGGAATTGCTTCTGGAAGCATTCCATGGGTGTCCATGATGGTTCTTCACAAAAAGTCTTCCCTATTACAAAAGGTAGACGACACCCTAGGTGCATTTCATACACACGCAGTGGCCGGACTCCTGGGGGGACTCCTCACCGGACTCTTTGCCGAGCCAGCTCTCTGCAGGCTCATATTGCCAGTTGGCAACAGCCGCGGTGCCTTCTACGGTGGAAATGGCGGGGTCCAATTCCTGAAACAAATTGTGGCAGCCCTGTTTGTGATTGCTTGGAACATAGTCTCAACCACAATTATTCTTCTGGGTATAAGATGCTTCATACCTTTGAGAATGCCTGATGAAGAGCTTATGATTGGAGACGATGCAGTTCATGGAGAAGAGGCCTATGCTCTTTGGGGTGATGGAGAGAAATATGACCCAACAAAGCATGGTTGGAATACATCTGTGTATGGTGAAGAAATGGCACCGTCTCCATATATCAATGGGGCTAGAGGTGTCACCATTAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015291 GO:0015398 GO:0015696 GO:0016020 GO:0022804 GO:0022857 GO:0030054 GO:0034220 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

485

Amino Acids

52.14

Weight (kDa)

8.66

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	26 - 444	3.1e-81	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38290 AT2G38290
fragaria_vesca	FvH4_1g25720 FvH4_6g11040
malus_domestica	MD04G1162200.v1.1 MD12G1174700.v1.1 MD15G1139800.v1.1
prunus_persica	Prupe.4G283900_v2.0.a1 Prupe.4G285000_v2.0.a1 Prupe.4G285300_v2.0.a1 Prupe.4G285400_v2.0.a1 Prupe.6G281900_v2.0.a1
pyrus_communis	pycom04g14520 pycom15g12630
rosa_chinensis	RchiOBHm_Chr3g0462351 RchiOBHm_Chr3g0484601 RchiOBHm_Chr3g0484621 RchiOBHm_Chr3g0484631 RchiOBHm_Chr3g0484641
rosa_laevigata	RLG00000023210 RLG00000023213 RLG00000024864
rosa_multiflora	Rmu_co8101050.1_g000001 Rmu_sc0005467.1_g000003 Rmu_sc0005467.1_g000004 Rmu_sc0005467.1_g000010 Rmu_sc0005467.1_g000012 Rmu_sc0007199.1_g000001 Rmu_sc0007199.1_g000005 Rmu_sc0007199.1_g000006 Rmu_sc0007199.1_g000008 Rmu_sc0013434.1_g000001 Rmu_ssc0000061.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397570 Rroxscaffold_6G00397590
rosa_rugosa	Rorug03G0056100 Rorug03G0212700 Rorug03G0212800
rosa_samantha	Rh3AG114700 Rh3AG262800 Rh3AG262900 Rh3AG263100 Rh3BG117900 Rh3BG298300 Rh3BG298500 Rh3CG120700 Rh3CG295300 Rh3CG295600 Rh3CG295800 Rh3DG119900 Rh3DG291600 Rh3DG291800
rosa_wichuraiana	Rw3G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	325
AccB1I	GGYRCC	3 cut(s)	325, 1145, 1408
AccI	GTMKAC	1 cut(s)	1023
AccII	CGCG	2 cut(s)	608, 1143
AclI	AACGTT	1 cut(s)	678
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	1059
AdeI	CACNNNGTG	1 cut(s)	1057
AfaI	GTAC	2 cut(s)	327, 392
AfiI	CCNNNNNNNGG	5 cut(s)	272, 293, 322, 702, 914
AgsI	TTSAA	5 cut(s)	646, 733, 771, 784, 875
AhlI	ACTAGT	1 cut(s)	14
AjnI	CCWGG	3 cut(s)	77, 907, 1068
AluBI	AGCT	6 cut(s)	85, 259, 284, 434, 1106, 1291
AluI	AGCT	6 cut(s)	85, 259, 284, 434, 1106, 1291
Alw21I	GWGCWC	3 cut(s)	228, 286, 745
Alw26I	GTCTC	6 cut(s)	40, 246, 530, 1231, 1296, 1419
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	8 cut(s)	124, 165, 186, 243, 288, 516, 1059, 1326
ApeKI	GCWGC	7 cut(s)	82, 92, 109, 410, 752, 800, 1196
AseI	ATTAAT	1 cut(s)	1449
Asp700I	GAANNNNTTC	1 cut(s)	955
Asp718I	GGTACC	1 cut(s)	325
AspA2I	CCTAGG	1 cut(s)	1033
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	7 cut(s)	124, 165, 187, 289, 516, 635, 1171
AsuC2I	CCSGG	3 cut(s)	41, 123, 703
AsuHPI	GGTGA	6 cut(s)	79, 871, 1075, 1355, 1409, 1435
AvaII	GGWCC	2 cut(s)	635, 1171
AvrII	CCTAGG	1 cut(s)	1033
AxyI	CCTNAGG	1 cut(s)	598
BanI	GGYRCC	3 cut(s)	325, 1145, 1408
BanII	GRGCYC	2 cut(s)	286, 353
BauI	CACGAG	2 cut(s)	805, 893
BbsI	GAAGAC	1 cut(s)	996
Bbv12I	GWGCWC	3 cut(s)	228, 286, 745
BbvI	GCAGC	7 cut(s)	94, 96, 104, 397, 739, 787, 1208
BccI	CCATC	7 cut(s)	422, 466, 709, 862, 940, 979, 1340
BceAI	ACGGC	5 cut(s)	152, 191, 349, 633, 854
BciT130I	CCWGG	3 cut(s)	79, 909, 1070
BcnI	CCSGG	3 cut(s)	41, 123, 703
BcoDI	GTCTC	6 cut(s)	40, 246, 530, 1231, 1296, 1419
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	4 cut(s)	15, 830, 1034, 1434
BfmI	CTRYAG	4 cut(s)	25, 110, 939, 1111
BglI	GCCNNNNNGGC	1 cut(s)	185
BlnI	CCTAGG	1 cut(s)	1033
Bme1390I	CCNGG	6 cut(s)	41, 79, 123, 703, 909, 1070
Bme18I	GGWCC	2 cut(s)	635, 1171
BmgT120I	GGNCC	7 cut(s)	124, 165, 187, 289, 516, 635, 1171
BmiI	GGNNCC	8 cut(s)	327, 517, 542, 700, 868, 1147, 1172, 1410
BmrFI	CCNGG	6 cut(s)	41, 79, 123, 703, 909, 1070
BmsI	GCATC	3 cut(s)	612, 1247, 1297
BpiI	GAAGAC	1 cut(s)	996
BplI	GAGNNNNNCTC	4 cut(s)	243, 275, 528, 560
BpuMI	CCSGG	3 cut(s)	41, 123, 703
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	8 cut(s)	39, 292, 321, 638, 971, 1033, 1069, 1141
BsaWI	WCCGGW	2 cut(s)	572, 1085
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 293, 322, 702, 914
Bse1I	ACTGG	1 cut(s)	1127
Bse21I	CCTNAGG	1 cut(s)	598
BseBI	CCWGG	3 cut(s)	79, 909, 1070
BseDI	CCNNGG	8 cut(s)	39, 292, 321, 638, 971, 1033, 1069, 1141
BseGI	GGATG	3 cut(s)	132, 477, 720
BseLI	CCNNNNNNNGG	5 cut(s)	272, 293, 322, 702, 914
BseMII	CTCAG	2 cut(s)	189, 612
BseNI	ACTGG	1 cut(s)	1127
BseRI	GAGGAG	2 cut(s)	586, 1070
BseXI	GCAGC	7 cut(s)	94, 96, 104, 397, 739, 787, 1208
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	2 cut(s)	608, 1143
BshFI	GGCC	8 cut(s)	126, 167, 188, 245, 290, 518, 1061, 1328
BshNI	GGYRCC	3 cut(s)	325, 1145, 1408
BsiHKAI	GWGCWC	3 cut(s)	228, 286, 745
BsiSI	CCGG	8 cut(s)	41, 122, 287, 573, 696, 702, 1062, 1086
BslFI	GGGAC	4 cut(s)	32, 467, 903, 1089
BslI	CCNNNNNNNGG	5 cut(s)	272, 293, 322, 702, 914
BsmAI	GTCTC	6 cut(s)	40, 246, 530, 1231, 1296, 1419
BsmBI	CGTCTC	2 cut(s)	1296, 1419
BsmFI	GGGAC	4 cut(s)	32, 467, 903, 1089
BsmI	GAATGC	2 cut(s)	966, 1281
BsnI	GGCC	8 cut(s)	126, 167, 188, 245, 290, 518, 1061, 1328
Bso31I	GGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	4 cut(s)	228, 286, 353, 745
Bsp143I	GATC	2 cut(s)	309, 861
Bsp19I	CCATGG	1 cut(s)	971
BspANI	GGCC	8 cut(s)	126, 167, 188, 245, 290, 518, 1061, 1328
BspCNI	CTCAG	2 cut(s)	188, 611
BspFNI	CGCG	2 cut(s)	608, 1143
BspLI	GGNNCC	8 cut(s)	327, 517, 542, 700, 868, 1147, 1172, 1410
BspMAI	CTGCAG	2 cut(s)	114, 1115
BspPI	GGATC	1 cut(s)	304
BspQI	GCTCTTC	1 cut(s)	1281
BspT107I	GGYRCC	3 cut(s)	325, 1145, 1408
BspTNI	GGTCTC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	1127
BssECI	CCNNGG	8 cut(s)	39, 292, 321, 638, 971, 1033, 1069, 1141
BssMI	GATC	2 cut(s)	309, 861
BssSI	CACGAG	2 cut(s)	805, 893
BssT1I	CCWWGG	4 cut(s)	321, 638, 971, 1033
Bst2BI	CACGAG	2 cut(s)	805, 893
Bst2UI	CCWGG	3 cut(s)	79, 909, 1070
Bst4CI	ACNGT	7 cut(s)	29, 358, 511, 711, 737, 1157, 1413
Bst6I	CTCTTC	3 cut(s)	641, 1281, 1317
BstAPI	GCANNNNNTGC	2 cut(s)	118, 749
BstC8I	GCNNGC	6 cut(s)	119, 145, 338, 693, 1104, 1115
BstDEI	CTNAG	2 cut(s)	175, 598
BstDSI	CCRYGG	2 cut(s)	971, 1141
BstF5I	GGATG	3 cut(s)	132, 477, 720
BstFNI	CGCG	2 cut(s)	608, 1143
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	2 cut(s)	312, 864
BstMAI	GTCTC	6 cut(s)	40, 246, 530, 1231, 1296, 1419
BstMBI	GATC	2 cut(s)	309, 861
BstNI	CCWGG	3 cut(s)	79, 909, 1070
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	6 cut(s)	39, 77, 121, 701, 907, 1068
BstSFI	CTRYAG	4 cut(s)	25, 110, 939, 1111
BstUI	CGCG	2 cut(s)	608, 1143
BstV1I	GCAGC	7 cut(s)	94, 96, 104, 397, 739, 787, 1208
BstV2I	GAAGAC	1 cut(s)	996
Bsu36I	CCTNAGG	1 cut(s)	598
BsuRI	GGCC	8 cut(s)	126, 167, 188, 245, 290, 518, 1061, 1328
BtgI	CCRYGG	2 cut(s)	971, 1141
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	132, 477, 720
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	3 cut(s)	34, 507, 1062
Cac8I	GCNNGC	6 cut(s)	119, 145, 338, 693, 1104, 1115
CfoI	GCGC	1 cut(s)	453
Cfr13I	GGNCC	7 cut(s)	124, 165, 187, 289, 516, 635, 1171
Cfr42I	CCGCGG	1 cut(s)	1144
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	326, 391
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	9 cut(s)	118, 184, 241, 454, 838, 972, 982, 1316, 1373
CviQI	GTAC	2 cut(s)	326, 391
DdeI	CTNAG	2 cut(s)	175, 598
DpnI	GATC	2 cut(s)	311, 863
DpnII	GATC	2 cut(s)	309, 861
DraIII	CACNNNGTG	1 cut(s)	1057
EaeI	YGGCCR	1 cut(s)	1059
Eam1104I	CTCTTC	3 cut(s)	641, 1281, 1317
EarI	CTCTTC	3 cut(s)	641, 1281, 1317
Ecl136II	GAGCTC	1 cut(s)	284
Eco130I	CCWWGG	4 cut(s)	321, 638, 971, 1033
Eco147I	AGGCCT	1 cut(s)	1328
Eco24I	GRGCYC	2 cut(s)	286, 353
Eco31I	GGTCTC	1 cut(s)	246
Eco47I	GGWCC	2 cut(s)	635, 1171
Eco53kI	GAGCTC	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	516
EcoRII	CCWGG	3 cut(s)	77, 907, 1068
EcoT14I	CCWWGG	4 cut(s)	321, 638, 971, 1033
EcoT38I	GRGCYC	2 cut(s)	286, 353
ErhI	CCWWGG	4 cut(s)	321, 638, 971, 1033
Esp3I	CGTCTC	2 cut(s)	1296, 1419
FaeI	CATG	9 cut(s)	121, 187, 244, 457, 841, 975, 985, 1319, 1376
FaqI	GGGAC	4 cut(s)	32, 467, 903, 1089
FatI	CATG	9 cut(s)	117, 183, 240, 453, 837, 971, 981, 1315, 1372
FauI	CCCGC	2 cut(s)	601, 1160
FauNDI	CATATG	2 cut(s)	748, 794
FblI	GTMKAC	1 cut(s)	1023
FokI	GGATG	3 cut(s)	119, 484, 727
FriOI	GRGCYC	2 cut(s)	286, 353
FspBI	CTAG	4 cut(s)	15, 830, 1034, 1434
GlaI	GCGC	1 cut(s)	452
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	8 cut(s)	126, 167, 188, 245, 290, 518, 1061, 1328
HapII	CCGG	8 cut(s)	41, 122, 287, 573, 696, 702, 1062, 1086
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	9 cut(s)	121, 187, 244, 457, 841, 975, 985, 1319, 1376
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	4 cut(s)	891, 1065, 1077, 1089
HpaII	CCGG	8 cut(s)	41, 122, 287, 573, 696, 702, 1062, 1086
HphI	GGTGA	6 cut(s)	79, 871, 1075, 1355, 1409, 1435
Hpy166II	GTNNAC	4 cut(s)	172, 391, 402, 1024
Hpy188I	TCNGA	3 cut(s)	296, 309, 866
Hpy188III	TCNNGA	5 cut(s)	154, 820, 830, 960, 1180
Hpy8I	GTNNAC	4 cut(s)	172, 391, 402, 1024
Hpy99I	CGWCG	3 cut(s)	233, 358, 385
HpyAV	CCTTC	5 cut(s)	190, 208, 272, 821, 1159
HpyCH4III	ACNGT	7 cut(s)	29, 358, 511, 711, 737, 1157, 1413
HpyCH4IV	ACGT	2 cut(s)	419, 678
HpyCH4V	TGCA	8 cut(s)	32, 112, 755, 900, 925, 1040, 1113, 1310
HpyF3I	CTNAG	2 cut(s)	175, 598
HpySE526I	ACGT	2 cut(s)	419, 678
Hsp92II	CATG	9 cut(s)	121, 187, 244, 457, 841, 975, 985, 1319, 1376
HspAI	GCGC	1 cut(s)	451
KpnI	GGTACC	1 cut(s)	329
KspI	CCGCGG	1 cut(s)	1144
Kzo9I	GATC	2 cut(s)	309, 861
LguI	GCTCTTC	1 cut(s)	1281
LmnI	GCTCC	7 cut(s)	264, 281, 289, 698, 740, 866, 911
Lsp1109I	GCAGC	7 cut(s)	94, 96, 104, 397, 739, 787, 1208
LweI	GCATC	3 cut(s)	612, 1247, 1297
MaeI	CTAG	4 cut(s)	15, 830, 1034, 1434
MaeII	ACGT	2 cut(s)	419, 678
MaeIII	GTNAC	1 cut(s)	1441
MalI	GATC	2 cut(s)	311, 863
MboI	GATC	2 cut(s)	309, 861
MboII	GAAGA	8 cut(s)	169, 658, 983, 996, 1235, 1298, 1334, 1412
MfeI	CAATTG	1 cut(s)	771
MhlI	GDGCHC	4 cut(s)	228, 286, 353, 745
MluCI	AATT	7 cut(s)	213, 771, 951, 1175, 1188, 1236, 1450
MlyI	GAGTC	4 cut(s)	885, 1059, 1071, 1083
MmeI	TCCRAC	1 cut(s)	1358
MroXI	GAANNNNTTC	1 cut(s)	955
MseI	TTAA	2 cut(s)	462, 1449
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	1143
MspI	CCGG	8 cut(s)	41, 122, 287, 573, 696, 702, 1062, 1086
MspR9I	CCNGG	6 cut(s)	41, 79, 123, 703, 909, 1070
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	2 cut(s)	966, 1281
MvaI	CCWGG	3 cut(s)	79, 909, 1070
MvnI	CGCG	2 cut(s)	608, 1143
NciI	CCSGG	3 cut(s)	41, 123, 703
NcoI	CCATGG	1 cut(s)	971
NdeI	CATATG	2 cut(s)	748, 794
NdeII	GATC	2 cut(s)	309, 861
NlaIII	CATG	9 cut(s)	121, 187, 244, 457, 841, 975, 985, 1319, 1376
NlaIV	GGNNCC	8 cut(s)	327, 517, 542, 700, 868, 1147, 1172, 1410
NmeAIII	GCCGAG	1 cut(s)	1123
NmuCI	GTSAC	1 cut(s)	1441
NspI	RCATGY	1 cut(s)	121
PaeI	GCATGC	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	1328
PciSI	GCTCTTC	1 cut(s)	1281
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PctI	GAATGC	2 cut(s)	966, 1281
PdmI	GAANNNNTTC	1 cut(s)	955
PleI	GAGTC	4 cut(s)	885, 1059, 1071, 1083
PpsI	GAGTC	4 cut(s)	885, 1059, 1071, 1083
PshBI	ATTAAT	1 cut(s)	1449
Psp124BI	GAGCTC	1 cut(s)	286
Psp1406I	AACGTT	1 cut(s)	678
Psp6I	CCWGG	3 cut(s)	77, 907, 1068
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	3 cut(s)	77, 907, 1068
PspN4I	GGNNCC	8 cut(s)	327, 517, 542, 700, 868, 1147, 1172, 1410
PspPI	GGNCC	7 cut(s)	124, 165, 187, 289, 516, 635, 1171
PsrI	GAACNNNNNNTAC	2 cut(s)	383, 415
PstI	CTGCAG	2 cut(s)	114, 1115
RsaI	GTAC	2 cut(s)	327, 392
RsaNI	GTAC	2 cut(s)	326, 391
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	286
SacII	CCGCGG	1 cut(s)	1144
SapI	GCTCTTC	1 cut(s)	1281
SaqAI	TTAA	2 cut(s)	462, 1449
Sau3AI	GATC	2 cut(s)	309, 861
Sau96I	GGNCC	7 cut(s)	124, 165, 187, 289, 516, 635, 1171
SchI	GAGTC	4 cut(s)	885, 1059, 1071, 1083
ScrFI	CCNGG	6 cut(s)	41, 79, 123, 703, 909, 1070
SduI	GDGCHC	4 cut(s)	228, 286, 353, 745
SfaNI	GCATC	3 cut(s)	612, 1247, 1297
SfcI	CTRYAG	4 cut(s)	25, 110, 939, 1111
Sfr303I	CCGCGG	1 cut(s)	1144
SgrBI	CCGCGG	1 cut(s)	1144
SinI	GGWCC	2 cut(s)	635, 1171
SmiMI	CAYNNNNRTG	1 cut(s)	555
SpeI	ACTAGT	1 cut(s)	14
SphI	GCATGC	1 cut(s)	121
Sse9I	AATT	7 cut(s)	213, 771, 951, 1175, 1188, 1236, 1450
SseBI	AGGCCT	1 cut(s)	1328
SspMI	CTAG	4 cut(s)	15, 830, 1034, 1434
SstI	GAGCTC	1 cut(s)	286
StuI	AGGCCT	1 cut(s)	1328
StyD4I	CCNGG	6 cut(s)	39, 77, 121, 701, 907, 1068
StyI	CCWWGG	4 cut(s)	321, 638, 971, 1033
TaaI	ACNGT	7 cut(s)	29, 358, 511, 711, 737, 1157, 1413
TaiI	ACGT	2 cut(s)	422, 681
TaqI	TCGA	1 cut(s)	347
TasI	AATT	7 cut(s)	213, 771, 951, 1175, 1188, 1236, 1450
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	4 cut(s)	206, 623, 938, 1143
Tru1I	TTAA	2 cut(s)	462, 1449
Tru9I	TTAA	2 cut(s)	462, 1449
TscAI	CASTG	3 cut(s)	34, 514, 1062
TseFI	GTSAC	1 cut(s)	1441
TseI	GCWGC	7 cut(s)	82, 92, 109, 410, 752, 800, 1196
Tsp45I	GTSAC	1 cut(s)	1441
TspDTI	ATGAA	6 cut(s)	172, 470, 1034, 1252, 1299, 1304
TspRI	CASTG	3 cut(s)	34, 514, 1062
VpaK11BI	GGWCC	2 cut(s)	635, 1171
VspI	ATTAAT	1 cut(s)	1449
XbaI	TCTAGA	1 cut(s)	829
XceI	RCATGY	1 cut(s)	121
XmaJI	CCTAGG	1 cut(s)	1033
XmiI	GTMKAC	1 cut(s)	1023
XmnI	GAANNNNTTC	1 cut(s)	955
XspI	CTAG	4 cut(s)	15, 830, 1034, 1434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.