Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8101050.1

Orthogroup ID

OG0001358

Physical Location & Seq

Genomic Coordinates Reverse (-)

83 .. 472

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8101050.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgctgacgttgatcgagtttcaggtaggacctagggtgaagaaggacagggagagattcccaccaaacaacgtactactgacgttggccggagcagggttgctgtggttgggatgggccggtttcaacggcggagatccctacgcggccaacacagactcctccatggctgtcctcaacactaatatctgcgctgccacgagtctcttggtgtggacatggctcgatgtcatcttcttcaacaagccctccgtcatcggagctgtccagggaatgattactggcctcgtatgtattactcctgctgcaggttgctctttaacttttatcctcgtatatatgagactcaagactcttgatcatccattttccctaccattattaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

129

Amino Acids

14.0

Weight (kDa)

7.72

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38290 AT2G38290
fragaria_vesca	FvH4_1g25720 FvH4_6g11040
malus_domestica	MD04G1162200.v1.1 MD12G1174700.v1.1 MD15G1139800.v1.1
prunus_persica	Prupe.4G283900_v2.0.a1 Prupe.4G285000_v2.0.a1 Prupe.4G285300_v2.0.a1 Prupe.4G285400_v2.0.a1 Prupe.6G281900_v2.0.a1
pyrus_communis	pycom04g14520 pycom15g12630
rosa_chinensis	RchiOBHm_Chr3g0462351 RchiOBHm_Chr3g0484601 RchiOBHm_Chr3g0484621 RchiOBHm_Chr3g0484631 RchiOBHm_Chr3g0484641
rosa_laevigata	RLG00000023210 RLG00000023213 RLG00000024864
rosa_multiflora	Rmu_co8101050.1_g000001 Rmu_sc0005467.1_g000003 Rmu_sc0005467.1_g000004 Rmu_sc0005467.1_g000010 Rmu_sc0005467.1_g000012 Rmu_sc0007199.1_g000001 Rmu_sc0007199.1_g000005 Rmu_sc0007199.1_g000006 Rmu_sc0007199.1_g000008 Rmu_sc0013434.1_g000001 Rmu_ssc0000061.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397570 Rroxscaffold_6G00397590
rosa_rugosa	Rorug03G0056100 Rorug03G0212700 Rorug03G0212800
rosa_samantha	Rh3AG114700 Rh3AG262800 Rh3AG262900 Rh3AG263100 Rh3BG117900 Rh3BG298300 Rh3BG298500 Rh3CG120700 Rh3CG295300 Rh3CG295600 Rh3CG295800 Rh3DG119900 Rh3DG291600 Rh3DG291800
rosa_wichuraiana	Rw3G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccII	CGCG	1 cut(s)	146
AciI	CCGC	2 cut(s)	132, 146
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	2 cut(s)	87, 147
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	96, 308
AgsI	TTSAA	2 cut(s)	127, 241
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	2 cut(s)	209, 337
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	4 cut(s)	87, 117, 147, 283
ApeKI	GCWGC	2 cut(s)	194, 305
AseI	ATTAAT	1 cut(s)	383
AspA2I	CCTAGG	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	29, 117
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	29
AvrII	CCTAGG	1 cut(s)	32
BauI	CACGAG	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	181, 292
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	209, 337
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	147, 195, 306
BlnI	CCTAGG	1 cut(s)	32
BlsI	GCNGC	3 cut(s)	148, 196, 307
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 117
BmrFI	CCNGG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	32, 165, 268
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 308
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	32, 165, 268
BseGI	GGATG	2 cut(s)	119, 361
BseLI	CCNNNNNNNGG	2 cut(s)	96, 308
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	181, 292
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	4 cut(s)	89, 119, 149, 285
BsiSI	CCGG	2 cut(s)	90, 120
BslI	CCNNNNNNNGG	2 cut(s)	96, 308
BsmAI	GTCTC	2 cut(s)	209, 337
BsnI	GGCC	4 cut(s)	89, 119, 149, 285
Bsp143I	GATC	3 cut(s)	12, 136, 358
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	2 cut(s)	132, 146
BspANI	GGCC	4 cut(s)	89, 119, 149, 285
BspFNI	CGCG	1 cut(s)	146
BspMAI	CTGCAG	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	32, 165, 268
BssMI	GATC	3 cut(s)	12, 136, 358
BssSI	CACGAG	1 cut(s)	199
BssT1I	CCWWGG	2 cut(s)	32, 165
Bst2BI	CACGAG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	119, 361
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	3 cut(s)	15, 139, 361
BstMAI	GTCTC	2 cut(s)	209, 337
BstMBI	GATC	3 cut(s)	12, 136, 358
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	306
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	181, 292
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	4 cut(s)	89, 119, 149, 285
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	119, 361
BveI	ACCTGC	1 cut(s)	299
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	29, 117
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	166, 219
CviJI	RGCY	8 cut(s)	89, 119, 149, 170, 223, 247, 263, 285
CviKI_1	RGCY	8 cut(s)	89, 119, 149, 170, 223, 247, 263, 285
CviQI	GTAC	1 cut(s)	74
DpnI	GATC	3 cut(s)	14, 138, 360
DpnII	GATC	3 cut(s)	12, 136, 358
EaeI	YGGCCR	2 cut(s)	87, 147
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	32, 165
Eco47I	GGWCC	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	32, 165
ErhI	CCWWGG	2 cut(s)	32, 165
FaeI	CATG	2 cut(s)	169, 222
FaiI	YATR	6 cut(s)	167, 220, 292, 337, 339, 341
FatI	CATG	2 cut(s)	165, 218
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	147, 195, 306
FokI	GGATG	2 cut(s)	126, 348
Fsp4HI	GCNGC	3 cut(s)	147, 195, 306
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	3 cut(s)	147, 195, 306
HaeIII	GGCC	4 cut(s)	89, 119, 149, 285
HapII	CCGG	2 cut(s)	90, 120
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	169, 222
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	5 cut(s)	57, 158, 202, 345, 352
HpaII	CCGG	2 cut(s)	90, 120
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	2 cut(s)	349, 356
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	3 cut(s)	8, 72, 83
HpyCH4V	TGCA	1 cut(s)	308
HpySE526I	ACGT	3 cut(s)	8, 72, 83
Hsp92II	CATG	2 cut(s)	169, 222
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	12, 136, 358
LmnI	GCTCC	2 cut(s)	92, 260
Lsp1109I	GCAGC	2 cut(s)	181, 292
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	3 cut(s)	8, 72, 83
MalI	GATC	3 cut(s)	14, 138, 360
MboI	GATC	3 cut(s)	12, 136, 358
MboII	GAAGA	3 cut(s)	52, 226, 229
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	4 cut(s)	152, 211, 339, 346
MnlI	CCTC	5 cut(s)	172, 185, 259, 296, 341
MseI	TTAA	2 cut(s)	320, 383
MspI	CCGG	2 cut(s)	90, 120
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	12, 136, 358
NlaIII	CATG	2 cut(s)	169, 222
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	3 cut(s)	148, 196, 307
PleI	GAGTC	4 cut(s)	152, 210, 339, 346
PpsI	GAGTC	4 cut(s)	152, 210, 339, 346
PpuMI	RGGWCCY	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	29, 117
PspPPI	RGGWCCY	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	320, 383
SatI	GCNGC	3 cut(s)	147, 195, 306
Sau3AI	GATC	3 cut(s)	12, 136, 358
Sau96I	GGNCC	2 cut(s)	29, 117
SchI	GAGTC	4 cut(s)	152, 211, 339, 346
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	7 cut(s)	11, 27, 34, 75, 86, 265, 313
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	2 cut(s)	132, 146
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	32, 165
TaiI	ACGT	3 cut(s)	11, 75, 86
TaqI	TCGA	2 cut(s)	15, 225
TasI	AATT	1 cut(s)	384
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	320, 383
Tru9I	TTAA	2 cut(s)	320, 383
TseI	GCWGC	2 cut(s)	194, 305
TspGWI	ACGGA	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmaJI	CCTAGG	1 cut(s)	32
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.