Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007199.1

Orthogroup ID

OG0001358

Physical Location & Seq

Genomic Coordinates Reverse (-)

23999 .. 24526

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007199.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggtacgtgtattgcgtaatttcgtgaatgaattaggtcttgtacaaggatgggcagcaatagtgatgggagtattggctggcagcgtgccatggttcaccatgatgatcgtagacaaaaggtggagactcttaaccgcagttgacgacaccctcggcgtcgtccatacccacgcagtggccggattcctaggcggtatattgaccggtatctttgccgagccccaactatgtgcgctcttcttaccggccacgaactctcgcggggtagcctacgggggcatccaagtgttcaaacaaatcgtagccgccctgttcatcatcggatggaacatcgtggtgacctcaatcatttgtgtggcaattcggtttgtggttcctctacgcatgccggaggagcagttgttgattggagataacgcagtgcatggggaagaggcttacgctttgtggggtgatggggagctgtacgatcatccttctactattataaataataacggacgtgtggctgaggctcccagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

175

Amino Acids

18.95

Weight (kDa)

5.46

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38290 AT2G38290
fragaria_vesca	FvH4_1g25720 FvH4_6g11040
malus_domestica	MD04G1162200.v1.1 MD12G1174700.v1.1 MD15G1139800.v1.1
prunus_persica	Prupe.4G283900_v2.0.a1 Prupe.4G285000_v2.0.a1 Prupe.4G285300_v2.0.a1 Prupe.4G285400_v2.0.a1 Prupe.6G281900_v2.0.a1
pyrus_communis	pycom04g14520 pycom15g12630
rosa_chinensis	RchiOBHm_Chr3g0462351 RchiOBHm_Chr3g0484601 RchiOBHm_Chr3g0484621 RchiOBHm_Chr3g0484631 RchiOBHm_Chr3g0484641
rosa_laevigata	RLG00000023210 RLG00000023213 RLG00000024864
rosa_multiflora	Rmu_co8101050.1_g000001 Rmu_sc0005467.1_g000003 Rmu_sc0005467.1_g000004 Rmu_sc0005467.1_g000010 Rmu_sc0005467.1_g000012 Rmu_sc0007199.1_g000001 Rmu_sc0007199.1_g000005 Rmu_sc0007199.1_g000006 Rmu_sc0007199.1_g000008 Rmu_sc0013434.1_g000001 Rmu_ssc0000061.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397570 Rroxscaffold_6G00397590
rosa_rugosa	Rorug03G0056100 Rorug03G0212700 Rorug03G0212800
rosa_samantha	Rh3AG114700 Rh3AG262800 Rh3AG262900 Rh3AG263100 Rh3BG117900 Rh3BG298300 Rh3BG298500 Rh3CG120700 Rh3CG295300 Rh3CG295600 Rh3CG295800 Rh3DG119900 Rh3DG291600 Rh3DG291800
rosa_wichuraiana	Rw3G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	491
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	264
AciI	CCGC	4 cut(s)	138, 195, 264, 309
AcoI	YGGCCR	2 cut(s)	180, 249
AcyI	GRCGYC	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	178
AfaI	GTAC	3 cut(s)	6, 45, 470
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflIII	ACRYGT	2 cut(s)	7, 505
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	295
AjiI	CACGTC	1 cut(s)	506
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	180, 249
ApeKI	GCWGC	2 cut(s)	56, 84
AsiGI	ACCGGT	1 cut(s)	206
AspA2I	CCTAGG	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	91, 352, 467
AvrII	CCTAGG	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	68, 96
BccI	CCATC	4 cut(s)	45, 61, 321, 452
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	3 cut(s)	57, 85, 309
BlnI	CCTAGG	1 cut(s)	190
BlsI	GCNGC	3 cut(s)	58, 86, 310
BmgBI	CACGTC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	378, 519
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	513
BsaAI	YACGTR	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	92, 154, 190
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	4 cut(s)	386, 389, 416, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	2 cut(s)	206, 247
Bse1I	ACTGG	1 cut(s)	522
BseDI	CCNNGG	3 cut(s)	92, 154, 190
BseGI	GGATG	4 cut(s)	56, 282, 332, 475
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	68, 96
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	182, 251
BshTI	ACCGGT	1 cut(s)	206
BsiSI	CCGG	4 cut(s)	183, 207, 248, 392
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	2 cut(s)	182, 251
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	108, 472
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	4 cut(s)	138, 195, 264, 309
BspANI	GGCC	2 cut(s)	182, 251
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	378, 519
BspQI	GCTCTTC	1 cut(s)	245
BsrFI	RCCGGY	2 cut(s)	206, 247
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	522
BssAI	RCCGGY	2 cut(s)	206, 247
BssECI	CCNNGG	3 cut(s)	92, 154, 190
BssMI	GATC	2 cut(s)	108, 472
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	92, 190
Bst6I	CTCTTC	2 cut(s)	245, 429
BstACI	GRCGYC	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	82, 89, 389
BstDEI	CTNAG	1 cut(s)	513
BstDSI	CCRYGG	1 cut(s)	92
BstEII	GGTNACC	1 cut(s)	340
BstF5I	GGATG	4 cut(s)	56, 282, 332, 475
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	111, 475
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	2 cut(s)	108, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	340
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	68, 96
BsuRI	GGCC	2 cut(s)	182, 251
BtgI	CCRYGG	1 cut(s)	92
BtrI	CACGTC	1 cut(s)	506
BtsCI	GGATG	4 cut(s)	56, 282, 332, 475
BtsI	GCAGTG	2 cut(s)	183, 429
BtsIMutI	CAGTG	2 cut(s)	183, 429
Cac8I	GCNNGC	3 cut(s)	82, 89, 389
CfoI	GCGC	1 cut(s)	238
Cfr10I	RCCGGY	2 cut(s)	206, 247
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	5, 44, 469
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	4 cut(s)	93, 103, 388, 428
CviQI	GTAC	3 cut(s)	5, 44, 469
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	2 cut(s)	110, 474
DpnII	GATC	2 cut(s)	108, 472
DraIII	CACNNNGTG	1 cut(s)	178
EaeI	YGGCCR	2 cut(s)	180, 249
Eam1104I	CTCTTC	2 cut(s)	245, 429
EarI	CTCTTC	2 cut(s)	245, 429
Eco130I	CCWWGG	2 cut(s)	92, 190
Eco24I	GRGCYC	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	92, 190
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	2 cut(s)	92, 190
FaeI	CATG	4 cut(s)	96, 106, 391, 431
FaiI	YATR	8 cut(s)	94, 104, 168, 200, 232, 389, 429, 491
FatI	CATG	4 cut(s)	92, 102, 387, 427
FauI	CCCGC	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	57, 85, 309
FokI	GGATG	4 cut(s)	63, 269, 339, 462
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	57, 85, 309
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	3 cut(s)	57, 85, 309
HaeIII	GGCC	2 cut(s)	182, 251
HapII	CCGG	4 cut(s)	183, 207, 248, 392
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	96, 106, 391, 431
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	129, 186
HpaII	CCGG	4 cut(s)	183, 207, 248, 392
HphI	GGTGA	3 cut(s)	91, 352, 467
Hpy166II	GTNNAC	3 cut(s)	99, 115, 145
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	3 cut(s)	99, 115, 145
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	489
HpyCH4IV	ACGT	2 cut(s)	7, 505
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	2 cut(s)	7, 505
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	96, 106, 391, 431
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	108, 472
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	3 cut(s)	397, 463, 523
LpnPI	CCDG	6 cut(s)	66, 196, 220, 261, 326, 405
Lsp1109I	GCAGC	2 cut(s)	68, 96
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	2 cut(s)	7, 505
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	2 cut(s)	110, 474
MboI	GATC	2 cut(s)	108, 472
MboII	GAAGA	2 cut(s)	232, 446
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	3 cut(s)	19, 32, 363
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	6 cut(s)	164, 355, 388, 390, 430, 508
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	4 cut(s)	104, 287, 338, 356
MspI	CCGG	4 cut(s)	183, 207, 248, 392
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	397
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	108, 472
NlaIII	CATG	4 cut(s)	96, 106, 391, 431
NlaIV	GGNNCC	2 cut(s)	378, 519
NmeAIII	GCCGAG	2 cut(s)	135, 244
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	391
PaeI	GCATGC	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	178
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	58, 86, 310
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	491
PspEI	GGTNACC	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	378, 519
RsaI	GTAC	3 cut(s)	6, 45, 470
RsaNI	GTAC	3 cut(s)	5, 44, 469
RseI	CAYNNNNRTG	4 cut(s)	104, 287, 338, 356
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	3 cut(s)	57, 85, 309
Sau3AI	GATC	2 cut(s)	108, 472
SchI	GAGTC	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	6 cut(s)	10, 40, 125, 347, 468, 508
SfaNI	GCATC	1 cut(s)	291
SmiMI	CAYNNNNRTG	4 cut(s)	104, 287, 338, 356
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	3 cut(s)	19, 32, 363
SsiI	CCGC	4 cut(s)	138, 195, 264, 309
SspMI	CTAG	1 cut(s)	191
StyI	CCWWGG	2 cut(s)	92, 190
TaiI	ACGT	2 cut(s)	10, 508
TasI	AATT	3 cut(s)	19, 32, 363
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	2 cut(s)	183, 429
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	56, 84
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	45, 307
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	2 cut(s)	183, 429
Van91I	CCANNNNNTGG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	391
XmaJI	CCTAGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.