Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005467.1

Orthogroup ID

OG0001358

Physical Location & Seq

Genomic Coordinates Reverse (-)

12993 .. 13454

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005467.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgggagcattggctggcagcgtgccatggttcaccatgatgatcgtagacaaaaggtggagactcttaaccgcagttgacgacaccctcggcgtcgtgcatacccacgcagtggccggattcctaggcggcatattgaccggtatctttgccgagccccaactatgtgcgctcttcttaccggccacgaactctcgcggggtagcctacgggggcatccaagtgttcaaacaaatcgtagccgccctgttcatcatcggatggaacatcgtggtgacctcaatcatttgtgtggtaattcggtttgtggttcctctacgcatgccggaggagcagttgttgattggagataacgtagtgcatggggaagaggcctacgctttgtggggtgatggggagctgtatgatcatccttctactattataaataataatggacgtgtggctgagcttcccagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

153

Amino Acids

16.56

Weight (kDa)

5.17

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38290 AT2G38290
fragaria_vesca	FvH4_1g25720 FvH4_6g11040
malus_domestica	MD04G1162200.v1.1 MD12G1174700.v1.1 MD15G1139800.v1.1
prunus_persica	Prupe.4G283900_v2.0.a1 Prupe.4G285000_v2.0.a1 Prupe.4G285300_v2.0.a1 Prupe.4G285400_v2.0.a1 Prupe.6G281900_v2.0.a1
pyrus_communis	pycom04g14520 pycom15g12630
rosa_chinensis	RchiOBHm_Chr3g0462351 RchiOBHm_Chr3g0484601 RchiOBHm_Chr3g0484621 RchiOBHm_Chr3g0484631 RchiOBHm_Chr3g0484641
rosa_laevigata	RLG00000023210 RLG00000023213 RLG00000024864
rosa_multiflora	Rmu_co8101050.1_g000001 Rmu_sc0005467.1_g000003 Rmu_sc0005467.1_g000004 Rmu_sc0005467.1_g000010 Rmu_sc0005467.1_g000012 Rmu_sc0007199.1_g000001 Rmu_sc0007199.1_g000005 Rmu_sc0007199.1_g000006 Rmu_sc0007199.1_g000008 Rmu_sc0013434.1_g000001 Rmu_ssc0000061.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397570 Rroxscaffold_6G00397590
rosa_rugosa	Rorug03G0056100 Rorug03G0212700 Rorug03G0212800
rosa_samantha	Rh3AG114700 Rh3AG262800 Rh3AG262900 Rh3AG263100 Rh3BG117900 Rh3BG298300 Rh3BG298500 Rh3CG120700 Rh3CG295300 Rh3CG295600 Rh3CG295800 Rh3DG119900 Rh3DG291600 Rh3DG291800
rosa_wichuraiana	Rw3G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	198
AciI	CCGC	4 cut(s)	72, 129, 198, 243
AcoI	YGGCCR	2 cut(s)	114, 183
AcyI	GRCGYC	1 cut(s)	93
AdeI	CACNNNGTG	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	439
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	440
AluBI	AGCT	2 cut(s)	400, 451
AluI	AGCT	2 cut(s)	400, 451
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	3 cut(s)	114, 183, 372
ApeKI	GCWGC	1 cut(s)	18
AsiGI	ACCGGT	1 cut(s)	140
AspA2I	CCTAGG	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	25, 286, 401
AvrII	CCTAGG	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	255, 386
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	125
BisI	GCNGC	3 cut(s)	19, 130, 243
BlnI	CCTAGG	1 cut(s)	124
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	3 cut(s)	20, 131, 244
BmgBI	CACGTC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	26, 88, 124
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	6 cut(s)	320, 323, 339, 350, 353, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	2 cut(s)	140, 181
Bse1I	ACTGG	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	26, 88, 124
BseGI	GGATG	3 cut(s)	216, 266, 409
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	116, 185, 374
BshTI	ACCGGT	1 cut(s)	140
BsiSI	CCGG	4 cut(s)	117, 141, 182, 326
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	3 cut(s)	116, 185, 374
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	42, 406
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	4 cut(s)	72, 129, 198, 243
BspANI	GGCC	3 cut(s)	116, 185, 374
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	179
BsrFI	RCCGGY	2 cut(s)	140, 181
BsrI	ACTGG	1 cut(s)	456
BssAI	RCCGGY	2 cut(s)	140, 181
BssECI	CCNNGG	3 cut(s)	26, 88, 124
BssMI	GATC	2 cut(s)	42, 406
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	26, 124
Bst6I	CTCTTC	2 cut(s)	179, 363
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	3 cut(s)	16, 23, 323
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	26
BstEII	GGTNACC	1 cut(s)	274
BstF5I	GGATG	3 cut(s)	216, 266, 409
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	45, 409
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	42, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	325
BstPI	GGTNACC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	116, 185, 374
BtgI	CCRYGG	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	216, 266, 409
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	3 cut(s)	16, 23, 323
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	2 cut(s)	140, 181
CseI	GACGC	1 cut(s)	82
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	4 cut(s)	27, 37, 322, 362
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	2 cut(s)	44, 408
DpnII	GATC	2 cut(s)	42, 406
DraIII	CACNNNGTG	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	114, 183
Eam1104I	CTCTTC	2 cut(s)	179, 363
EarI	CTCTTC	2 cut(s)	179, 363
Eco130I	CCWWGG	2 cut(s)	26, 124
Eco147I	AGGCCT	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	26, 124
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	2 cut(s)	26, 124
FaeI	CATG	4 cut(s)	30, 40, 325, 365
FaiI	YATR	9 cut(s)	28, 38, 102, 134, 166, 323, 363, 405, 425
FatI	CATG	4 cut(s)	26, 36, 321, 361
FauI	CCCGC	1 cut(s)	191
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	19, 130, 243
FokI	GGATG	3 cut(s)	203, 273, 396
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	19, 130, 243
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	3 cut(s)	19, 130, 243
HaeIII	GGCC	3 cut(s)	116, 185, 374
HapII	CCGG	4 cut(s)	117, 141, 182, 326
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	30, 40, 325, 365
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	63, 120
HpaII	CCGG	4 cut(s)	117, 141, 182, 326
HphI	GGTGA	3 cut(s)	25, 286, 401
Hpy166II	GTNNAC	3 cut(s)	33, 49, 79
Hpy188I	TCNGA	1 cut(s)	260
Hpy8I	GTNNAC	3 cut(s)	33, 49, 79
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	423
HpyCH4IV	ACGT	2 cut(s)	354, 439
HpyCH4V	TGCA	2 cut(s)	100, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	2 cut(s)	354, 439
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	30, 40, 325, 365
HspAI	GCGC	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	42, 406
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	3 cut(s)	5, 331, 397
LpnPI	CCDG	5 cut(s)	130, 154, 195, 260, 339
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	354, 439
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	44, 408
MboI	GATC	2 cut(s)	42, 406
MboII	GAAGA	2 cut(s)	166, 380
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	98, 289, 322, 324, 364
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	4 cut(s)	38, 221, 272, 290
MspI	CCGG	4 cut(s)	117, 141, 182, 326
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	331
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	42, 406
NlaIII	CATG	4 cut(s)	30, 40, 325, 365
NlaIV	GGNNCC	1 cut(s)	312
NmeAIII	GCCGAG	2 cut(s)	69, 178
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	325
PaeI	GCATGC	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	120
PflMI	CCANNNNNTGG	1 cut(s)	112
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	20, 131, 244
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	425
PspEI	GGTNACC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	312
RseI	CAYNNNNRTG	4 cut(s)	38, 221, 272, 290
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	3 cut(s)	19, 130, 243
Sau3AI	GATC	2 cut(s)	42, 406
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	59, 281, 357, 402, 442, 453
SfaNI	GCATC	1 cut(s)	225
SmiMI	CAYNNNNRTG	4 cut(s)	38, 221, 272, 290
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	1 cut(s)	297
SseBI	AGGCCT	1 cut(s)	374
SsiI	CCGC	4 cut(s)	72, 129, 198, 243
SspMI	CTAG	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	374
StyI	CCWWGG	2 cut(s)	26, 124
TaiI	ACGT	2 cut(s)	357, 442
TasI	AATT	1 cut(s)	297
TauI	GCSGC	2 cut(s)	132, 245
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	112
XceI	RCATGY	1 cut(s)	325
XmaJI	CCTAGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.