Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001358

Physical Location & Seq

Genomic Coordinates Reverse (-)

39882969 .. 39885787

Gene Structure 2819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCGACCACAACTAGTTTTGCCTACAGTGCAGTCTCCCCGGCAGTCCCAGAGTGGCTAAACAAAGGCGATAACGCCTGGCAGCTCACCGCAGCCACATTGGTTGGGCTGCAGAGCATGCCGGGCCTCATCATCCTCTACGCCAGCATAGTCAAGAAGAAATGGGCCGTCAACTCAGCCTTCATGGCCCTCTACGCCTTCGCCGCCGTCCTAATTTGTTGGGTGCTCGTCGGCTACCGCATGGCCTTTGGAGACCAGCTCCTTCCATTTTGGGGTAAGGGAGCTCCGGCCCTCGGACAGAGATTTCTGATCCATCAAGCCAAGGTGCCCGAAAGCAAGCATTTATCGAGCCCGCCGGTAGAGCCGCTTTACCCTATGGCGTCGCTTGTGTACTTTCAGTTCACTTTTGCTGCCATCACGTTGATTTTGTTAGCTGGGTCGGTTCTTGGGCGCATGAACATAAAGGCTTGGATGGCTTTTGTCCCTCTTTGGCTCATCTTTTCTTACACTGTTGGGGCCTTTAGTCTCTGGGGTGGAGGGTTCCTCTATCATTGGGGTGTCATTGACTACTCCGGTGGTTATGTCATCCACCTCTCCTCAGGCATCGCGGGTTTCACGGCGGCTTATTGGGTTGGTCCAAGGTTGAAGAGTGATAGGGAGAGGTTTCCCCCAAACAACGTTTTGCTTATGCTCGCCGGAGCCGGGTTACTGTGGATGGGGTGGTCGGGTTTCAACGGTGGAGCACCATATGCTGCAAACATCAACGCTTCAATTGCGGTGTTGAACACAAACATATGTGCTGCCACGAGCCTTCTCGTCTGGACTTCTCTAGATGTCATGTTCTTTGGAAAGCCATCGGTGATCGGAGCCGTTCAAGGAATGATGACGGGACTCGTGTGCATTACGCCAGGAGCAGGGTTGGTGCAATCGTGGGCGGCTATAGTGATGGGAATTGCTTCTGGAAGCATTCCATGGGTGTCCATGATGGTTCTTCACAAAAAGTCTTCCCTATTACAAAAGGTAGAGTTTCCTAGTCTTGCGTTTTCATTCTCTTTTGGCATGAGCTGCGTGATTCATATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015291 GO:0015398 GO:0015696 GO:0016020 GO:0022804 GO:0022857 GO:0030054 GO:0034220 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

362

Amino Acids

38.89

Weight (kDa)

9.41

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ammonium_transp	PF00909	26 - 333	8.1e-59	Ammonium Transporter Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38290 AT2G38290
fragaria_vesca	FvH4_1g25720 FvH4_6g11040
malus_domestica	MD04G1162200.v1.1 MD12G1174700.v1.1 MD15G1139800.v1.1
prunus_persica	Prupe.4G283900_v2.0.a1 Prupe.4G285000_v2.0.a1 Prupe.4G285300_v2.0.a1 Prupe.4G285400_v2.0.a1 Prupe.6G281900_v2.0.a1
pyrus_communis	pycom04g14520 pycom15g12630
rosa_chinensis	RchiOBHm_Chr3g0462351 RchiOBHm_Chr3g0484601 RchiOBHm_Chr3g0484621 RchiOBHm_Chr3g0484631 RchiOBHm_Chr3g0484641
rosa_laevigata	RLG00000023210 RLG00000023213 RLG00000024864
rosa_multiflora	Rmu_co8101050.1_g000001 Rmu_sc0005467.1_g000003 Rmu_sc0005467.1_g000004 Rmu_sc0005467.1_g000010 Rmu_sc0005467.1_g000012 Rmu_sc0007199.1_g000001 Rmu_sc0007199.1_g000005 Rmu_sc0007199.1_g000006 Rmu_sc0007199.1_g000008 Rmu_sc0013434.1_g000001 Rmu_ssc0000061.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397570 Rroxscaffold_6G00397590
rosa_rugosa	Rorug03G0056100 Rorug03G0212700 Rorug03G0212800
rosa_samantha	Rh3AG114700 Rh3AG262800 Rh3AG262900 Rh3AG263100 Rh3BG117900 Rh3BG298300 Rh3BG298500 Rh3CG120700 Rh3CG295300 Rh3CG295600 Rh3CG295800 Rh3DG119900 Rh3DG291600 Rh3DG291800
rosa_wichuraiana	Rw3G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	608
AciI	CCGC	9 cut(s)	90, 204, 238, 353, 365, 608, 620, 776, 935
AclI	AACGTT	1 cut(s)	678
AclWI	GGATC	1 cut(s)	304
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	4 cut(s)	272, 293, 702, 914
AgsI	TTSAA	5 cut(s)	646, 733, 771, 784, 875
AhlI	ACTAGT	1 cut(s)	14
AjnI	CCWGG	2 cut(s)	77, 907
AluBI	AGCT	5 cut(s)	85, 259, 284, 434, 1065
AluI	AGCT	5 cut(s)	85, 259, 284, 434, 1065
Alw21I	GWGCWC	3 cut(s)	228, 286, 745
Alw26I	GTCTC	3 cut(s)	40, 246, 530
AlwI	GGATC	1 cut(s)	304
AoxI	GGCC	6 cut(s)	124, 165, 186, 243, 288, 516
ApeKI	GCWGC	7 cut(s)	82, 92, 109, 410, 752, 800, 1065
Asp700I	GAANNNNTTC	1 cut(s)	955
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	6 cut(s)	124, 165, 187, 289, 516, 635
AsuC2I	CCSGG	3 cut(s)	41, 123, 703
AsuHPI	GGTGA	2 cut(s)	79, 871
AvaII	GGWCC	1 cut(s)	635
AxyI	CCTNAGG	1 cut(s)	598
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	325
BanII	GRGCYC	2 cut(s)	286, 353
BauI	CACGAG	2 cut(s)	805, 893
BbsI	GAAGAC	1 cut(s)	996
Bbv12I	GWGCWC	3 cut(s)	228, 286, 745
BbvI	GCAGC	7 cut(s)	94, 96, 104, 397, 739, 787, 1052
BccI	CCATC	7 cut(s)	321, 422, 466, 709, 862, 940, 979
BceAI	ACGGC	4 cut(s)	152, 191, 633, 854
BciT130I	CCWGG	2 cut(s)	79, 909
BcnI	CCSGG	3 cut(s)	41, 123, 703
BcoDI	GTCTC	3 cut(s)	40, 246, 530
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	3 cut(s)	15, 830, 1032
BfmI	CTRYAG	3 cut(s)	25, 110, 939
BglI	GCCNNNNNGGC	1 cut(s)	185
Bme1390I	CCNGG	5 cut(s)	41, 79, 123, 703, 909
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	6 cut(s)	124, 165, 187, 289, 516, 635
BmiI	GGNNCC	5 cut(s)	327, 517, 542, 700, 868
BmrFI	CCNGG	5 cut(s)	41, 79, 123, 703, 909
BmsI	GCATC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	996
BplI	GAGNNNNNCTC	4 cut(s)	243, 275, 528, 560
BpuMI	CCSGG	3 cut(s)	41, 123, 703
BsaHI	GRCGYC	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	5 cut(s)	39, 292, 321, 638, 971
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	4 cut(s)	272, 293, 702, 914
Bse118I	RCCGGY	1 cut(s)	355
Bse21I	CCTNAGG	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	79, 909
BseDI	CCNNGG	5 cut(s)	39, 292, 321, 638, 971
BseGI	GGATG	4 cut(s)	132, 477, 585, 720
BseLI	CCNNNNNNNGG	4 cut(s)	272, 293, 702, 914
BseMII	CTCAG	2 cut(s)	189, 612
BseRI	GAGGAG	1 cut(s)	586
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	7 cut(s)	94, 96, 104, 397, 739, 787, 1052
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	6 cut(s)	126, 167, 188, 245, 290, 518
BshNI	GGYRCC	1 cut(s)	325
BsiHKAI	GWGCWC	3 cut(s)	228, 286, 745
BsiSI	CCGG	7 cut(s)	41, 122, 287, 356, 573, 696, 702
BslFI	GGGAC	3 cut(s)	32, 467, 903
BslI	CCNNNNNNNGG	4 cut(s)	272, 293, 702, 914
BsmAI	GTCTC	3 cut(s)	40, 246, 530
BsmFI	GGGAC	3 cut(s)	32, 467, 903
BsmI	GAATGC	1 cut(s)	966
BsnI	GGCC	6 cut(s)	126, 167, 188, 245, 290, 518
Bso31I	GGTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	5 cut(s)	228, 286, 330, 353, 745
Bsp143I	GATC	2 cut(s)	309, 861
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	9 cut(s)	90, 204, 238, 353, 365, 608, 620, 776, 935
BspANI	GGCC	6 cut(s)	126, 167, 188, 245, 290, 518
BspCNI	CTCAG	2 cut(s)	188, 611
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	5 cut(s)	327, 517, 542, 700, 868
BspMAI	CTGCAG	1 cut(s)	114
BspPI	GGATC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	5 cut(s)	39, 292, 321, 638, 971
BssMI	GATC	2 cut(s)	309, 861
BssNI	GRCGYC	1 cut(s)	380
BssSI	CACGAG	2 cut(s)	805, 893
BssT1I	CCWWGG	3 cut(s)	321, 638, 971
Bst2BI	CACGAG	2 cut(s)	805, 893
Bst2UI	CCWGG	2 cut(s)	79, 909
Bst4CI	ACNGT	4 cut(s)	29, 511, 711, 737
Bst6I	CTCTTC	1 cut(s)	641
BstACI	GRCGYC	1 cut(s)	380
BstAPI	GCANNNNNTGC	3 cut(s)	118, 749, 1065
BstC8I	GCNNGC	5 cut(s)	119, 145, 338, 353, 693
BstDEI	CTNAG	2 cut(s)	175, 598
BstDSI	CCRYGG	1 cut(s)	971
BstF5I	GGATG	4 cut(s)	132, 477, 585, 720
BstFNI	CGCG	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	2 cut(s)	312, 864
BstMAI	GTCTC	3 cut(s)	40, 246, 530
BstMBI	GATC	2 cut(s)	309, 861
BstNI	CCWGG	2 cut(s)	79, 909
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	5 cut(s)	39, 77, 121, 701, 907
BstSFI	CTRYAG	3 cut(s)	25, 110, 939
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	7 cut(s)	94, 96, 104, 397, 739, 787, 1052
BstV2I	GAAGAC	1 cut(s)	996
Bsu36I	CCTNAGG	1 cut(s)	598
BsuRI	GGCC	6 cut(s)	126, 167, 188, 245, 290, 518
BtgI	CCRYGG	1 cut(s)	971
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	132, 477, 585, 720
BtsIMutI	CAGTG	2 cut(s)	34, 507
Cac8I	GCNNGC	5 cut(s)	119, 145, 338, 353, 693
CfoI	GCGC	1 cut(s)	453
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	6 cut(s)	124, 165, 187, 289, 516, 635
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	391
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	8 cut(s)	118, 184, 241, 454, 838, 972, 982, 1060
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	175, 598
DpnI	GATC	2 cut(s)	311, 863
DpnII	GATC	2 cut(s)	309, 861
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Ecl136II	GAGCTC	1 cut(s)	284
Eco130I	CCWWGG	3 cut(s)	321, 638, 971
Eco24I	GRGCYC	2 cut(s)	286, 353
Eco31I	GGTCTC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	635
Eco53kI	GAGCTC	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	516
EcoRII	CCWGG	2 cut(s)	77, 907
EcoT14I	CCWWGG	3 cut(s)	321, 638, 971
EcoT38I	GRGCYC	2 cut(s)	286, 353
ErhI	CCWWGG	3 cut(s)	321, 638, 971
FaeI	CATG	8 cut(s)	121, 187, 244, 457, 841, 975, 985, 1063
FaqI	GGGAC	3 cut(s)	32, 467, 903
FatI	CATG	8 cut(s)	117, 183, 240, 453, 837, 971, 981, 1059
FauI	CCCGC	2 cut(s)	360, 601
FauNDI	CATATG	2 cut(s)	748, 794
FokI	GGATG	4 cut(s)	119, 484, 572, 727
FriOI	GRGCYC	2 cut(s)	286, 353
FspBI	CTAG	3 cut(s)	15, 830, 1032
GlaI	GCGC	1 cut(s)	452
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	6 cut(s)	126, 167, 188, 245, 290, 518
HapII	CCGG	7 cut(s)	41, 122, 287, 356, 573, 696, 702
HgaI	GACGC	1 cut(s)	369
HhaI	GCGC	1 cut(s)	453
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	8 cut(s)	121, 187, 244, 457, 841, 975, 985, 1063
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	891, 1072
HpaII	CCGG	7 cut(s)	41, 122, 287, 356, 573, 696, 702
HphI	GGTGA	2 cut(s)	79, 871
Hpy166II	GTNNAC	3 cut(s)	172, 391, 402
Hpy188I	TCNGA	3 cut(s)	296, 309, 866
Hpy188III	TCNNGA	4 cut(s)	154, 820, 830, 960
Hpy8I	GTNNAC	3 cut(s)	172, 391, 402
Hpy99I	CGWCG	2 cut(s)	233, 385
HpyAV	CCTTC	4 cut(s)	190, 208, 272, 821
HpyCH4III	ACNGT	4 cut(s)	29, 511, 711, 737
HpyCH4IV	ACGT	2 cut(s)	419, 678
HpyCH4V	TGCA	5 cut(s)	32, 112, 755, 900, 925
HpyF3I	CTNAG	2 cut(s)	175, 598
HpySE526I	ACGT	2 cut(s)	419, 678
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	8 cut(s)	121, 187, 244, 457, 841, 975, 985, 1063
HspAI	GCGC	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	309, 861
LmnI	GCTCC	7 cut(s)	264, 281, 289, 698, 740, 866, 911
Lsp1109I	GCAGC	7 cut(s)	94, 96, 104, 397, 739, 787, 1052
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	3 cut(s)	15, 830, 1032
MaeII	ACGT	2 cut(s)	419, 678
MaeIII	GTNAC	1 cut(s)	705
MalI	GATC	2 cut(s)	311, 863
MboI	GATC	2 cut(s)	309, 861
MboII	GAAGA	4 cut(s)	169, 658, 983, 996
MfeI	CAATTG	1 cut(s)	771
MhlI	GDGCHC	5 cut(s)	228, 286, 330, 353, 745
MluCI	AATT	3 cut(s)	213, 771, 951
MlyI	GAGTC	1 cut(s)	885
MroXI	GAANNNNTTC	1 cut(s)	955
MslI	CAYNNNNRTG	1 cut(s)	555
MspI	CCGG	7 cut(s)	41, 122, 287, 356, 573, 696, 702
MspR9I	CCNGG	5 cut(s)	41, 79, 123, 703, 909
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	1 cut(s)	966
MvaI	CCWGG	2 cut(s)	79, 909
MvnI	CGCG	1 cut(s)	608
NciI	CCSGG	3 cut(s)	41, 123, 703
NcoI	CCATGG	1 cut(s)	971
NdeI	CATATG	2 cut(s)	748, 794
NdeII	GATC	2 cut(s)	309, 861
NlaIII	CATG	8 cut(s)	121, 187, 244, 457, 841, 975, 985, 1063
NlaIV	GGNNCC	5 cut(s)	327, 517, 542, 700, 868
NspI	RCATGY	1 cut(s)	121
PaeI	GCATGC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	966
PdmI	GAANNNNTTC	1 cut(s)	955
PfeI	GAWTC	1 cut(s)	1072
PleI	GAGTC	1 cut(s)	885
PpsI	GAGTC	1 cut(s)	885
Psp124BI	GAGCTC	1 cut(s)	286
Psp1406I	AACGTT	1 cut(s)	678
Psp6I	CCWGG	2 cut(s)	77, 907
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	2 cut(s)	77, 907
PspN4I	GGNNCC	5 cut(s)	327, 517, 542, 700, 868
PspPI	GGNCC	6 cut(s)	124, 165, 187, 289, 516, 635
PsrI	GAACNNNNNNTAC	2 cut(s)	383, 415
PstI	CTGCAG	1 cut(s)	114
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	286
Sau3AI	GATC	2 cut(s)	309, 861
Sau96I	GGNCC	6 cut(s)	124, 165, 187, 289, 516, 635
SchI	GAGTC	1 cut(s)	885
ScrFI	CCNGG	5 cut(s)	41, 79, 123, 703, 909
SduI	GDGCHC	5 cut(s)	228, 286, 330, 353, 745
SfaNI	GCATC	1 cut(s)	612
SfcI	CTRYAG	3 cut(s)	25, 110, 939
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	555
SpeI	ACTAGT	1 cut(s)	14
SphI	GCATGC	1 cut(s)	121
Sse9I	AATT	3 cut(s)	213, 771, 951
SsiI	CCGC	9 cut(s)	90, 204, 238, 353, 365, 608, 620, 776, 935
SspMI	CTAG	3 cut(s)	15, 830, 1032
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	5 cut(s)	39, 77, 121, 701, 907
StyI	CCWWGG	3 cut(s)	321, 638, 971
TaaI	ACNGT	4 cut(s)	29, 511, 711, 737
TaiI	ACGT	2 cut(s)	422, 681
TaqI	TCGA	1 cut(s)	347
TasI	AATT	3 cut(s)	213, 771, 951
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	4 cut(s)	206, 367, 623, 938
TfiI	GAWTC	1 cut(s)	1072
TscAI	CASTG	2 cut(s)	34, 514
TseI	GCWGC	7 cut(s)	82, 92, 109, 410, 752, 800, 1065
TspDTI	ATGAA	4 cut(s)	172, 470, 1035, 1064
TspRI	CASTG	2 cut(s)	34, 514
VpaK11BI	GGWCC	1 cut(s)	635
XbaI	TCTAGA	1 cut(s)	829
XceI	RCATGY	1 cut(s)	121
XmnI	GAANNNNTTC	1 cut(s)	955
XspI	CTAG	3 cut(s)	15, 830, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.