Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013434.1

Orthogroup ID

OG0001358

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1441

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013434.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

atgctgacgttgatcgagtttcaggtaggacctaggctgaagaaggacagggagagattcccaccaaacaacgtgctgctgactttggcgggagcggggttgctgtggatgggatgggccggtttcaacggcggagatccgtatgcggccaacataacagcctccatggctgtcctcaacactaacatctgcgccgccacgagtctcgtggtgtggacggcgctcgatgtcatcttcttcaacaagccctccgtcatcggagcagtccagggaatgattaccggcctcgtcgtcattactcccgctgcaggtcttgtacaaggatgggcagcaatagtgatgggagtattggctggcagcgtgccatggttcaccatgatgatcgtagataaaaggtggagactcttagaagcagttgacgacaccctcggcgtcgtgcatacccacgcagtggccggattcctaggcggcatattgaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

160

Amino Acids

16.96

Weight (kDa)

6.71

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38290 AT2G38290
fragaria_vesca	FvH4_1g25720 FvH4_6g11040
malus_domestica	MD04G1162200.v1.1 MD12G1174700.v1.1 MD15G1139800.v1.1
prunus_persica	Prupe.4G283900_v2.0.a1 Prupe.4G285000_v2.0.a1 Prupe.4G285300_v2.0.a1 Prupe.4G285400_v2.0.a1 Prupe.6G281900_v2.0.a1
pyrus_communis	pycom04g14520 pycom15g12630
rosa_chinensis	RchiOBHm_Chr3g0462351 RchiOBHm_Chr3g0484601 RchiOBHm_Chr3g0484621 RchiOBHm_Chr3g0484631 RchiOBHm_Chr3g0484641
rosa_laevigata	RLG00000023210 RLG00000023213 RLG00000024864
rosa_multiflora	Rmu_co8101050.1_g000001 Rmu_sc0005467.1_g000003 Rmu_sc0005467.1_g000004 Rmu_sc0005467.1_g000010 Rmu_sc0005467.1_g000012 Rmu_sc0007199.1_g000001 Rmu_sc0007199.1_g000005 Rmu_sc0007199.1_g000006 Rmu_sc0007199.1_g000008 Rmu_sc0013434.1_g000001 Rmu_ssc0000061.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397570 Rroxscaffold_6G00397590
rosa_rugosa	Rorug03G0056100 Rorug03G0212700 Rorug03G0212800
rosa_samantha	Rh3AG114700 Rh3AG262800 Rh3AG262900 Rh3AG263100 Rh3BG117900 Rh3BG298300 Rh3BG298500 Rh3CG120700 Rh3CG295300 Rh3CG295600 Rh3CG295800 Rh3DG119900 Rh3DG291600 Rh3DG291800
rosa_wichuraiana	Rw3G009700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	451
AccBSI	CCGCTC	1 cut(s)	95
AciI	CCGC	7 cut(s)	89, 95, 132, 146, 195, 303, 468
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	2 cut(s)	147, 453
AcuI	CTGAAG	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	432
AdeI	CACNNNGTG	1 cut(s)	451
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	2 cut(s)	308, 451
AgsI	TTSAA	2 cut(s)	127, 241
AjnI	CCWGG	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	209, 394
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	4 cut(s)	117, 147, 283, 453
ApeKI	GCWGC	4 cut(s)	76, 305, 329, 357
AspA2I	CCTAGG	2 cut(s)	32, 463
AspLEI	GCGC	2 cut(s)	194, 223
AspS9I	GGNCC	2 cut(s)	29, 117
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	29
AvrII	CCTAGG	2 cut(s)	32, 463
BauI	CACGAG	2 cut(s)	199, 206
BbvI	GCAGC	4 cut(s)	63, 292, 341, 369
BccI	CCATC	4 cut(s)	103, 108, 318, 334
BceAI	ACGGC	2 cut(s)	145, 234
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	209, 394
BfaI	CTAG	2 cut(s)	33, 464
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	7 cut(s)	77, 147, 195, 306, 330, 358, 469
BlnI	CCTAGG	2 cut(s)	32, 463
BlsI	GCNGC	7 cut(s)	78, 148, 196, 307, 331, 359, 470
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 117
BmrFI	CCNGG	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	6 cut(s)	32, 165, 268, 365, 427, 463
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 451
Bse118I	RCCGGY	2 cut(s)	119, 281
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	6 cut(s)	32, 165, 268, 365, 427, 463
BseGI	GGATG	3 cut(s)	114, 119, 329
BseLI	CCNNNNNNNGG	2 cut(s)	308, 451
BseXI	GCAGC	4 cut(s)	63, 292, 341, 369
BshFI	GGCC	4 cut(s)	119, 149, 285, 455
BsiSI	CCGG	3 cut(s)	120, 282, 456
BslI	CCNNNNNNNGG	2 cut(s)	308, 451
BsmAI	GTCTC	2 cut(s)	209, 394
BsnI	GGCC	4 cut(s)	119, 149, 285, 455
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	12, 136, 381
Bsp19I	CCATGG	2 cut(s)	165, 365
BspACI	CCGC	7 cut(s)	89, 95, 132, 146, 195, 303, 468
BspANI	GGCC	4 cut(s)	119, 149, 285, 455
BspMAI	CTGCAG	1 cut(s)	310
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	95
BsrFI	RCCGGY	2 cut(s)	119, 281
BsrGI	TGTACA	1 cut(s)	316
BssAI	RCCGGY	2 cut(s)	119, 281
BssECI	CCNNGG	6 cut(s)	32, 165, 268, 365, 427, 463
BssMI	GATC	3 cut(s)	12, 136, 381
BssNI	GRCGYC	1 cut(s)	432
BssSI	CACGAG	2 cut(s)	199, 206
BssT1I	CCWWGG	4 cut(s)	32, 165, 365, 463
Bst2BI	CACGAG	2 cut(s)	199, 206
Bst2UI	CCWGG	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	355, 362
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	2 cut(s)	165, 365
BstF5I	GGATG	3 cut(s)	114, 119, 329
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	194, 223
BstKTI	GATC	3 cut(s)	15, 139, 384
BstMAI	GTCTC	2 cut(s)	209, 394
BstMBI	GATC	3 cut(s)	12, 136, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	63, 292, 341, 369
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	4 cut(s)	119, 149, 285, 455
BtgI	CCRYGG	2 cut(s)	165, 365
BtsCI	GGATG	3 cut(s)	114, 119, 329
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	355, 362
CfoI	GCGC	2 cut(s)	194, 223
Cfr10I	RCCGGY	2 cut(s)	119, 281
Cfr13I	GGNCC	2 cut(s)	29, 117
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	3 cut(s)	166, 366, 376
CviJI	RGCY	9 cut(s)	37, 119, 149, 161, 170, 247, 285, 353, 455
CviKI_1	RGCY	9 cut(s)	37, 119, 149, 161, 170, 247, 285, 353, 455
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	3 cut(s)	14, 138, 383
DpnII	GATC	3 cut(s)	12, 136, 381
DraIII	CACNNNGTG	1 cut(s)	451
EaeI	YGGCCR	2 cut(s)	147, 453
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	4 cut(s)	32, 165, 365, 463
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	4 cut(s)	32, 165, 365, 463
ErhI	CCWWGG	4 cut(s)	32, 165, 365, 463
FaeI	CATG	3 cut(s)	169, 369, 379
FaiI	YATR	7 cut(s)	144, 155, 167, 367, 377, 441, 473
FatI	CATG	3 cut(s)	165, 365, 375
FauI	CCCGC	3 cut(s)	82, 88, 310
Fnu4HI	GCNGC	7 cut(s)	77, 147, 195, 306, 330, 358, 469
FokI	GGATG	3 cut(s)	121, 126, 336
Fsp4HI	GCNGC	7 cut(s)	77, 147, 195, 306, 330, 358, 469
FspBI	CTAG	2 cut(s)	33, 464
GlaI	GCGC	2 cut(s)	193, 222
GluI	GCNGC	7 cut(s)	77, 147, 195, 306, 330, 358, 469
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	4 cut(s)	119, 149, 285, 455
HapII	CCGG	3 cut(s)	120, 282, 456
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	2 cut(s)	194, 223
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	3 cut(s)	169, 369, 379
Hin6I	GCGC	2 cut(s)	192, 221
HinP1I	GCGC	2 cut(s)	192, 221
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	4 cut(s)	57, 202, 402, 459
HpaII	CCGG	3 cut(s)	120, 282, 456
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	3 cut(s)	216, 372, 418
Hpy188I	TCNGA	1 cut(s)	260
Hpy8I	GTNNAC	3 cut(s)	216, 372, 418
Hpy99I	CGWCG	2 cut(s)	293, 437
HpyAV	CCTTC	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	8, 72
HpyCH4V	TGCA	2 cut(s)	308, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	406
HpySE526I	ACGT	2 cut(s)	8, 72
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	169, 369, 379
HspAI	GCGC	2 cut(s)	192, 221
Kzo9I	GATC	3 cut(s)	12, 136, 381
LmnI	GCTCC	2 cut(s)	92, 260
LpnPI	CCDG	9 cut(s)	8, 34, 133, 254, 281, 294, 295, 339, 469
Lsp1109I	GCAGC	4 cut(s)	63, 292, 341, 369
MaeI	CTAG	2 cut(s)	33, 464
MaeII	ACGT	2 cut(s)	8, 72
MalI	GATC	3 cut(s)	14, 138, 383
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	3 cut(s)	12, 136, 381
MboII	GAAGA	3 cut(s)	52, 226, 229
MflI	RGATCY	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	211, 396
MnlI	CCTC	5 cut(s)	172, 185, 259, 296, 437
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	3 cut(s)	120, 282, 456
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	167
NcoI	CCATGG	2 cut(s)	165, 365
NdeII	GATC	3 cut(s)	12, 136, 381
NlaIII	CATG	3 cut(s)	169, 369, 379
NmeAIII	GCCGAG	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	57, 459
PflMI	CCANNNNNTGG	1 cut(s)	451
PkrI	GCNGC	7 cut(s)	78, 148, 196, 307, 331, 359, 470
PleI	GAGTC	2 cut(s)	210, 396
PpsI	GAGTC	2 cut(s)	210, 396
PpuMI	RGGWCCY	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	29, 117
PspPPI	RGGWCCY	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	377
SatI	GCNGC	7 cut(s)	77, 147, 195, 306, 330, 358, 469
Sau3AI	GATC	3 cut(s)	12, 136, 381
Sau96I	GGNCC	2 cut(s)	29, 117
SchI	GAGTC	2 cut(s)	211, 396
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	6 cut(s)	11, 27, 34, 75, 313, 398
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	377
SsiI	CCGC	7 cut(s)	89, 95, 132, 146, 195, 303, 468
SspMI	CTAG	2 cut(s)	33, 464
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	4 cut(s)	32, 165, 365, 463
TaiI	ACGT	2 cut(s)	11, 75
TaqI	TCGA	2 cut(s)	15, 225
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	3 cut(s)	149, 197, 471
TfiI	GAWTC	2 cut(s)	57, 459
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	4 cut(s)	76, 305, 329, 357
TspGWI	ACGGA	2 cut(s)	129, 241
TspRI	CASTG	1 cut(s)	456
Van91I	CCANNNNNTGG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmaJI	CCTAGG	2 cut(s)	32, 463
XspI	CTAG	2 cut(s)	33, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.