Rh3CG120700

ammonium transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
9745123 .. 9748301
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG120700.1

Sequence Viewer

Length: 1221 bp
ATGGCGACCACTACTAGTTTTGCCTACAGTGCAGTCTCCCCGGCAGTCCCAGAGTGGCTAAACAAAGGCGATAACGCCTGGCAGCTCACCGCAGCCACATTGGTTGGGCTGCAGAGCATGCCGGGCCTCATCATCCTCTACGCCAGCATAGTCAAGAAGAAATGGGCCGTCAACTCAGCCTTCATGGCCCTCTACGCCTTCGCCGCCGTCCTAATTTGTTGGGTGCTCGTCGGCTACCGCATGGCCTTTGGAGACCAGCTCCTTCCATTTTGGGGTAAGGGAGCTCCTGCCCTTGGACAGAGATTTCTGATCCACCGAGCCAAGGTGCCCGAAAGCAAGCATTTATCGAGCCCGACGGTAGAGCCGTTTTACCCGATGGCGACGCTTGTGTACTTTCAGTTCACTTTTGCTGCCATCACGTTGATTTTGTTAGCTGGGTCGGTTCTTGGGCGCATGAATATTAAGGCTTGGATGGCTTTTGTCCCTCTTTGGCTCATCTTTTCTTACACTGTTGGGGCCTTTAGTCTCTGGGGTGGAGGGTTCCTCTATCATTGGGGTGTCATTGACTACTCCGGTGGTTATGTTATCCACCTCTCCTCAGGCATCGCGGGTTTCACGGCGGCTTATTGGGTTGGTCCAAGGTTGAAGAGTGATAGGGAGAGGTTTCCCCCAAACAACGTTTTGCTTATGCTCGCCGGAGCCGGGCTACTGTGGATGGGGTGGTCGGGTTTCAACGGTGGAGCACCATATGCTGCAAACATCAACGCTTCAATTGCGGTGTTGAACACAAACATATGTGCTGCCACGAGCCTTCTCGTCTGGACTTCTCTAGATGTCATGTTCTTTGGAAAGCCATCGGTGATCGGAGCCGTTCAAGGAATGATGACGGGACTTGTGTGCATTACGCCAGGAGCAGGATTGGTGCAATCGTGGGCGGCTATAGTGATGGGAATTGCTTCTGGAAGCATTCCATGGGTGTCCATGATGGTTCTTCACAAAAAGTCTTCCCTATTACAAAAGGTAAAGTTTCCTATTACTTTTGTGACTTTTCTAGTCTTGCGTTTTCATTCTCATGAGCTGCGTGATTCATATTATTTGAGTATTGACAAGTCACGAAGCATTGGGCAACGGCTACTTGTTCCCATTGTATACAAATTTTTTTTTTTTACCTATTTTAGTTTGTTCAAATCTCGTGTTTTATTTTTTCCTTTAATATATTGA

Protein Analysis

406

Amino Acids

44.73

Weight (kDa)

9.81

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 26 - 333 4.3e-58 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 1149
AccII CGCG 1 cut(s) 608
AciI CCGC 7 cut(s) 90, 204, 238, 608, 620, 776, 935
AclI AACGTT 1 cut(s) 678
AclWI GGATC 1 cut(s) 304
AcsI RAATTY 1 cut(s) 1154
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 5 cut(s) 272, 293, 322, 702, 914
AgsI TTSAA 6 cut(s) 646, 733, 771, 784, 875, 1186
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 2 cut(s) 77, 907
AluBI AGCT 5 cut(s) 85, 259, 284, 434, 1078
AluI AGCT 5 cut(s) 85, 259, 284, 434, 1078
Alw21I GWGCWC 3 cut(s) 228, 286, 745
Alw26I GTCTC 3 cut(s) 40, 246, 530
AlwI GGATC 1 cut(s) 304
AoxI GGCC 5 cut(s) 124, 165, 186, 243, 516
ApeKI GCWGC 7 cut(s) 82, 92, 109, 410, 752, 800, 1078
ApoI RAATTY 1 cut(s) 1154
Asp700I GAANNNNTTC 1 cut(s) 955
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 5 cut(s) 124, 165, 187, 516, 635
AsuC2I CCSGG 3 cut(s) 41, 123, 703
AsuHPI GGTGA 2 cut(s) 79, 871
AvaII GGWCC 1 cut(s) 635
AxyI CCTNAGG 1 cut(s) 598
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 2 cut(s) 286, 353
BauI CACGAG 2 cut(s) 805, 1191
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 3 cut(s) 228, 286, 745
BbvI GCAGC 7 cut(s) 94, 96, 104, 397, 739, 787, 1065
BccI CCATC 7 cut(s) 370, 422, 466, 709, 862, 940, 979
BceAI ACGGC 6 cut(s) 152, 191, 349, 633, 854, 1145
BciT130I CCWGG 2 cut(s) 79, 909
BcnI CCSGG 3 cut(s) 41, 123, 703
BcoDI GTCTC 3 cut(s) 40, 246, 530
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 3 cut(s) 15, 830, 1052
BfmI CTRYAG 3 cut(s) 25, 110, 939
BglI GCCNNNNNGGC 1 cut(s) 185
Bme1390I CCNGG 5 cut(s) 41, 79, 123, 703, 909
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 5 cut(s) 124, 165, 187, 516, 635
BmiI GGNNCC 5 cut(s) 327, 517, 542, 700, 868
BmrFI CCNGG 5 cut(s) 41, 79, 123, 703, 909
BmsI GCATC 1 cut(s) 612
BpiI GAAGAC 1 cut(s) 996
BplI GAGNNNNNCTC 4 cut(s) 243, 275, 528, 560
BpuMI CCSGG 3 cut(s) 41, 123, 703
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 5 cut(s) 39, 292, 321, 638, 971
BsaWI WCCGGW 1 cut(s) 572
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 293, 322, 702, 914
Bse21I CCTNAGG 1 cut(s) 598
BseBI CCWGG 2 cut(s) 79, 909
BseDI CCNNGG 5 cut(s) 39, 292, 321, 638, 971
BseGI GGATG 3 cut(s) 132, 477, 720
BseLI CCNNNNNNNGG 5 cut(s) 272, 293, 322, 702, 914
BseMII CTCAG 2 cut(s) 189, 612
BseRI GAGGAG 1 cut(s) 586
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 7 cut(s) 94, 96, 104, 397, 739, 787, 1065
BseYI CCCAGC 1 cut(s) 434
BsgI GTGCAG 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 608
BshFI GGCC 5 cut(s) 126, 167, 188, 245, 518
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 3 cut(s) 228, 286, 745
BsiSI CCGG 5 cut(s) 41, 122, 573, 696, 702
BslFI GGGAC 3 cut(s) 32, 467, 903
BslI CCNNNNNNNGG 5 cut(s) 272, 293, 322, 702, 914
BsmAI GTCTC 3 cut(s) 40, 246, 530
BsmFI GGGAC 3 cut(s) 32, 467, 903
BsmI GAATGC 1 cut(s) 966
BsnI GGCC 5 cut(s) 126, 167, 188, 245, 518
Bso31I GGTCTC 1 cut(s) 246
Bsp1286I GDGCHC 5 cut(s) 228, 286, 330, 353, 745
Bsp143I GATC 2 cut(s) 309, 861
Bsp19I CCATGG 1 cut(s) 971
BspACI CCGC 7 cut(s) 90, 204, 238, 608, 620, 776, 935
BspANI GGCC 5 cut(s) 126, 167, 188, 245, 518
BspCNI CTCAG 2 cut(s) 188, 611
BspFNI CGCG 1 cut(s) 608
BspHI TCATGA 1 cut(s) 1072
BspLI GGNNCC 5 cut(s) 327, 517, 542, 700, 868
BspMAI CTGCAG 1 cut(s) 114
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 246
BssECI CCNNGG 5 cut(s) 39, 292, 321, 638, 971
BssMI GATC 2 cut(s) 309, 861
BssNAI GTATAC 1 cut(s) 1150
BssSI CACGAG 2 cut(s) 805, 1191
BssT1I CCWWGG 4 cut(s) 292, 321, 638, 971
Bst1107I GTATAC 1 cut(s) 1150
Bst2BI CACGAG 2 cut(s) 805, 1191
Bst2UI CCWGG 2 cut(s) 79, 909
Bst4CI ACNGT 5 cut(s) 29, 358, 511, 711, 737
Bst6I CTCTTC 1 cut(s) 641
BstAPI GCANNNNNTGC 2 cut(s) 118, 749
BstC8I GCNNGC 4 cut(s) 119, 145, 338, 693
BstDEI CTNAG 2 cut(s) 175, 598
BstDSI CCRYGG 1 cut(s) 971
BstF5I GGATG 3 cut(s) 132, 477, 720
BstFNI CGCG 1 cut(s) 608
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 2 cut(s) 312, 864
BstMAI GTCTC 3 cut(s) 40, 246, 530
BstMBI GATC 2 cut(s) 309, 861
BstMWI GCNNNNNNNGC 9 cut(s) 29, 118, 123, 185, 194, 203, 473, 749, 773
BstNI CCWGG 2 cut(s) 79, 909
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 5 cut(s) 39, 77, 121, 701, 907
BstSFI CTRYAG 3 cut(s) 25, 110, 939
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 1 cut(s) 608
BstV1I GCAGC 7 cut(s) 94, 96, 104, 397, 739, 787, 1065
BstV2I GAAGAC 1 cut(s) 996
BstZ17I GTATAC 1 cut(s) 1150
Bsu36I CCTNAGG 1 cut(s) 598
BsuRI GGCC 5 cut(s) 126, 167, 188, 245, 518
BtgI CCRYGG 1 cut(s) 971
BtgZI GCGATG 1 cut(s) 589
BtsCI GGATG 3 cut(s) 132, 477, 720
BtsIMutI CAGTG 2 cut(s) 34, 507
Cac8I GCNNGC 4 cut(s) 119, 145, 338, 693
CciI TCATGA 1 cut(s) 1072
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 5 cut(s) 124, 165, 187, 516, 635
CseI GACGC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 391
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 8 cut(s) 118, 184, 241, 454, 838, 972, 982, 1073
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 175, 598
DpnI GATC 2 cut(s) 311, 863
DpnII GATC 2 cut(s) 309, 861
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 4 cut(s) 292, 321, 638, 971
Eco24I GRGCYC 2 cut(s) 286, 353
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 635
Eco53kI GAGCTC 1 cut(s) 284
Eco81I CCTNAGG 1 cut(s) 598
EcoICRI GAGCTC 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 77, 907
EcoT14I CCWWGG 4 cut(s) 292, 321, 638, 971
EcoT38I GRGCYC 2 cut(s) 286, 353
ErhI CCWWGG 4 cut(s) 292, 321, 638, 971
FaeI CATG 8 cut(s) 121, 187, 244, 457, 841, 975, 985, 1076
FaqI GGGAC 3 cut(s) 32, 467, 903
FatI CATG 8 cut(s) 117, 183, 240, 453, 837, 971, 981, 1072
FauI CCCGC 1 cut(s) 601
FauNDI CATATG 2 cut(s) 748, 794
FblI GTMKAC 1 cut(s) 1149
FokI GGATG 3 cut(s) 119, 484, 727
FriOI GRGCYC 2 cut(s) 286, 353
FspBI CTAG 3 cut(s) 15, 830, 1052
GlaI GCGC 1 cut(s) 452
GsaI CCCAGC 1 cut(s) 438
HaeIII GGCC 5 cut(s) 126, 167, 188, 245, 518
HapII CCGG 5 cut(s) 41, 122, 573, 696, 702
HgaI GACGC 1 cut(s) 391
HhaI GCGC 1 cut(s) 453
Hin1II CATG 8 cut(s) 121, 187, 244, 457, 841, 975, 985, 1076
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 1085
HpaII CCGG 5 cut(s) 41, 122, 573, 696, 702
HphI GGTGA 2 cut(s) 79, 871
Hpy166II GTNNAC 4 cut(s) 172, 391, 402, 1150
Hpy188I TCNGA 2 cut(s) 309, 866
Hpy188III TCNNGA 6 cut(s) 154, 820, 830, 960, 1073, 1113
Hpy8I GTNNAC 4 cut(s) 172, 391, 402, 1150
Hpy99I CGWCG 3 cut(s) 233, 358, 385
HpyAV CCTTC 4 cut(s) 190, 208, 272, 821
HpyCH4III ACNGT 5 cut(s) 29, 358, 511, 711, 737
HpyCH4IV ACGT 2 cut(s) 419, 678
HpyCH4V TGCA 5 cut(s) 32, 112, 755, 900, 925
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 118, 123, 185, 194, 203, 473, 749, 773
HpyF3I CTNAG 2 cut(s) 175, 598
HpySE526I ACGT 2 cut(s) 419, 678
Hsp92II CATG 8 cut(s) 121, 187, 244, 457, 841, 975, 985, 1076
HspAI GCGC 1 cut(s) 451
Kzo9I GATC 2 cut(s) 309, 861
LmnI GCTCC 7 cut(s) 264, 281, 289, 698, 740, 866, 911
Lsp1109I GCAGC 7 cut(s) 94, 96, 104, 397, 739, 787, 1065
LweI GCATC 1 cut(s) 612
MaeI CTAG 3 cut(s) 15, 830, 1052
MaeII ACGT 2 cut(s) 419, 678
MaeIII GTNAC 2 cut(s) 1042, 1110
MalI GATC 2 cut(s) 311, 863
MboI GATC 2 cut(s) 309, 861
MboII GAAGA 4 cut(s) 169, 658, 983, 996
MfeI CAATTG 1 cut(s) 771
MhlI GDGCHC 5 cut(s) 228, 286, 330, 353, 745
MluCI AATT 4 cut(s) 213, 771, 951, 1154
MnlI CCTC 9 cut(s) 137, 146, 200, 495, 530, 554, 602, 607, 654
MroXI GAANNNNTTC 1 cut(s) 955
MseI TTAA 2 cut(s) 462, 1211
MslI CAYNNNNRTG 2 cut(s) 555, 1071
MspI CCGG 5 cut(s) 41, 122, 573, 696, 702
MspR9I CCNGG 5 cut(s) 41, 79, 123, 703, 909
MunI CAATTG 1 cut(s) 771
Mva1269I GAATGC 1 cut(s) 966
MvaI CCWGG 2 cut(s) 79, 909
MvnI CGCG 1 cut(s) 608
MwoI GCNNNNNNNGC 9 cut(s) 29, 118, 123, 185, 194, 203, 473, 749, 773
NciI CCSGG 3 cut(s) 41, 123, 703
NcoI CCATGG 1 cut(s) 971
NdeI CATATG 2 cut(s) 748, 794
NdeII GATC 2 cut(s) 309, 861
NlaIII CATG 8 cut(s) 121, 187, 244, 457, 841, 975, 985, 1076
NlaIV GGNNCC 5 cut(s) 327, 517, 542, 700, 868
NmuCI GTSAC 2 cut(s) 1042, 1110
NspI RCATGY 1 cut(s) 121
PaeI GCATGC 1 cut(s) 121
PagI TCATGA 1 cut(s) 1072
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PctI GAATGC 1 cut(s) 966
PdmI GAANNNNTTC 1 cut(s) 955
PfeI GAWTC 1 cut(s) 1085
Psp124BI GAGCTC 1 cut(s) 286
Psp1406I AACGTT 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 77, 907
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 2 cut(s) 77, 907
PspN4I GGNNCC 5 cut(s) 327, 517, 542, 700, 868
PspPI GGNCC 5 cut(s) 124, 165, 187, 516, 635
PsrI GAACNNNNNNTAC 2 cut(s) 383, 415
PstI CTGCAG 1 cut(s) 114
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 2 cut(s) 555, 1071
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 2 cut(s) 462, 1211
Sau3AI GATC 2 cut(s) 309, 861
Sau96I GGNCC 5 cut(s) 124, 165, 187, 516, 635
ScrFI CCNGG 5 cut(s) 41, 79, 123, 703, 909
SduI GDGCHC 5 cut(s) 228, 286, 330, 353, 745
SfaNI GCATC 1 cut(s) 612
SfcI CTRYAG 3 cut(s) 25, 110, 939
SinI GGWCC 1 cut(s) 635
SmiMI CAYNNNNRTG 2 cut(s) 555, 1071
SpeI ACTAGT 1 cut(s) 14
SphI GCATGC 1 cut(s) 121
Sse9I AATT 4 cut(s) 213, 771, 951, 1154
SsiI CCGC 7 cut(s) 90, 204, 238, 608, 620, 776, 935
SspI AATATT 1 cut(s) 460
SspMI CTAG 3 cut(s) 15, 830, 1052
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 5 cut(s) 39, 77, 121, 701, 907
StyI CCWWGG 4 cut(s) 292, 321, 638, 971
TaaI ACNGT 5 cut(s) 29, 358, 511, 711, 737
TaiI ACGT 2 cut(s) 422, 681
TaqI TCGA 1 cut(s) 347
TasI AATT 4 cut(s) 213, 771, 951, 1154
TatI WGTACW 1 cut(s) 390
TauI GCSGC 3 cut(s) 206, 623, 938
TfiI GAWTC 1 cut(s) 1085
Tru1I TTAA 2 cut(s) 462, 1211
Tru9I TTAA 2 cut(s) 462, 1211
TscAI CASTG 2 cut(s) 34, 514
TseFI GTSAC 2 cut(s) 1042, 1110
TseI GCWGC 7 cut(s) 82, 92, 109, 410, 752, 800, 1078
Tsp45I GTSAC 2 cut(s) 1042, 1110
TspDTI ATGAA 4 cut(s) 172, 470, 1055, 1077
TspRI CASTG 2 cut(s) 34, 514
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 1 cut(s) 1154
XbaI TCTAGA 1 cut(s) 829
XceI RCATGY 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 1149
XmnI GAANNNNTTC 1 cut(s) 955
XspI CTAG 3 cut(s) 15, 830, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.