FvH4_6g51970

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
38423533 .. 38432895
9363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51970.t6

Sequence Viewer

Length: 1452 bp
ATGGGTGGGAGAAGTTCAAAGGAGGATGGGAGTTTCAGGCAGAATAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGGAGTGGTTATCCTCATGTGCAACCACCATATGCTGCACCTCAGCAATCCTATCCCGCACCACAGTATTCATATCCGCCGCAGGATTATGGTCAAGAGAGTCAGGGATATGCACCCCAGCAGCAATCATATCCATCATCACAGTATTCCAGTCCCCCGCCGCCGGATTATGGCGGGAAAAGGAAGTTGGACAGGAGATATTCGAGGATTGCTGACAATTACAATTCCCTCGAGGAGGTGACTGAGGCACTTGCGCGTGCTGGACTTGAGTCTTCCAATTTGATAGTTGGTATTGATTTCACAAAGAGCAATGAGTGGACTGGCAAGAATTCGTTTAACAGAAGAAGCTTGCATCACATTGGGGGTGGTCAGAATCCCTATGAGCATGCAATAACCATTATTGGAAAAACCTTGGCTGCTTTTGATGAGGATAACATCATTCCATGTTATGGTTTTGGAGATGCAACAACTCATGATCAAGATGTTTTTAGTTTCTACCCAGACGATAGACATTGCAATGGGTTTGAGGAAGTATTGACTCGCTACAGGGAAATTGTTCCTAATCTTCGCCTTGCAGGACCGACTTCTTTTGCACCTGTAATTGAAATGGCCATGACTATTGTTGAGCAGAGTGGTGGCCAATACCATGTCCTAGTGATAATTGCAGATGGCCAGGTAACTAGAAGTGTTGATACTGAGGGTGGCAAGCTAAGTCCGCAGGAACAGAAGACAGTTGATGCAATTGTTGAAGCAAGCAAGTTCCCTCTATCAATTATATTAGTTGGTGTTGGAGATGGGCCCTGGGACATGATGAAAGAATTTGATGACAACATTCCTTCTCGGGCATTTGATAATTTCCAATTTGTGAACTTTACTGAAATAATGTCAAAGAATGTGCCGTCCTTGCGGAAGGAGACTGAATTTGCTCTAGCAGCCTTGATGGAAATTCCGCCTCAGTATAAAGCGACAATAGAGCTTAATCTCCTTGGTGGTCAGAAGGGCAATTCTCCCCACAGGGTTCCTCTCCCACCACCTCACTATGGTGCATCATCTTTCAAGAGTTCAAAACCTTCCTATGCCACGCCATCTTTCAGCAGTTCAAAACCTTCCTATGCCGCGCCATCTTTCAGCAGTTCAAAACCTTCTCATGAGCCGAGTGTTCCTCCTTATTATGAAGACAACAGTTCTTTCACTACAGCTACAGCTCCACCTGCTACCAGTTCTACTTATGATAATCAGGTCTGCCCCATCTGCCTTACAAATTCAAAAGACATGGCCTTTGGTTGTGGGCATCAGACGTGTTGCGAATGCGGACAAGATCTTCAGACGTGCCCCATATGCCGGAGCCCAATTCAGACCAGAATAAAACTCTATTGA

Protein Analysis

484

Amino Acids

53.01

Weight (kDa)

5.43

Isoelectric Point (pI)

66.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Copine PF07002 141 - 354 3.6e-73 Copine
zf-C3HC4_3 PF13920 437 - 478 2.4e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1294
AbsI CCTCGAGG 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 1294
AccB7I CCANNNNNTGG 1 cut(s) 524
AccII CGCG 2 cut(s) 331, 1193
AcoI YGGCCR 3 cut(s) 684, 712, 745
AcsI RAATTY 5 cut(s) 403, 893, 995, 1020, 1336
AcuI CTGAAG 1 cut(s) 1382
AfiI CCNNNNNNNGG 6 cut(s) 238, 245, 310, 524, 1115, 1416
AflIII ACRYGT 1 cut(s) 1373
AgsI TTSAA 8 cut(s) 18, 680, 824, 1132, 1140, 1176, 1212, 1341
AjiI CACGTC 2 cut(s) 1374, 1404
AjnI CCWGG 2 cut(s) 747, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AleI CACNNNNGTG 1 cut(s) 1116
AluBI AGCT 5 cut(s) 423, 784, 1051, 1274, 1280
AluI AGCT 5 cut(s) 423, 784, 1051, 1274, 1280
Alw26I GTCTC 1 cut(s) 983
Ama87I CYCGRG 2 cut(s) 305, 915
AoxI GGCC 5 cut(s) 684, 712, 745, 872, 1350
ApaI GGGCCC 1 cut(s) 876
ApeKI GCWGC 4 cut(s) 110, 196, 491, 1007
ApoI RAATTY 5 cut(s) 403, 893, 995, 1020, 1336
ArsI GACNNNNNNTTYG 2 cut(s) 1337, 1369
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 2 cut(s) 331, 1195
AspS9I GGNCC 3 cut(s) 653, 872, 873
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 2 cut(s) 305, 915
AvaII GGWCC 1 cut(s) 653
BaeGI GKGCMC 2 cut(s) 876, 1409
BalI TGGCCA 3 cut(s) 686, 714, 747
BanII GRGCYC 2 cut(s) 876, 1424
BarI GAAGNNNNNNTAC 2 cut(s) 751, 783
BbsI GAAGAC 3 cut(s) 339, 809, 1257
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 4 cut(s) 97, 208, 478, 1019
BccI CCATC 8 cut(s) 20, 217, 737, 863, 1009, 1168, 1204, 1331
BceAI ACGGC 1 cut(s) 958
BciT130I CCWGG 2 cut(s) 749, 877
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 1 cut(s) 983
BfaI CTAG 3 cut(s) 728, 756, 1004
BfmI CTRYAG 3 cut(s) 619, 1269, 1275
BfuAI ACCTGC 1 cut(s) 1294
BglII AGATCT 1 cut(s) 1393
BisI GCNGC 7 cut(s) 111, 155, 197, 236, 492, 1008, 1191
BlsI GCNGC 7 cut(s) 112, 156, 198, 237, 493, 1009, 1192
Bme1390I CCNGG 2 cut(s) 749, 877
Bme18I GGWCC 1 cut(s) 653
BmeT110I CYCGRG 2 cut(s) 305, 915
BmgBI CACGTC 2 cut(s) 1374, 1404
BmgT120I GGNCC 3 cut(s) 653, 872, 873
BmiI GGNNCC 3 cut(s) 874, 1095, 1421
BmrFI CCNGG 2 cut(s) 749, 877
BmsI GCATC 5 cut(s) 436, 526, 802, 1130, 1375
BoxI GACNNNNGTC 1 cut(s) 343
BpiI GAAGAC 3 cut(s) 339, 809, 1257
BplI GAGNNNNNCTC 2 cut(s) 1222, 1254
Bpu10I CCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 362
BsaJI CCNNGG 4 cut(s) 486, 875, 876, 1060
Bsc4I CCNNNNNNNGG 6 cut(s) 238, 245, 310, 524, 1115, 1416
Bse1I ACTGG 3 cut(s) 225, 400, 1293
Bse3DI GCAATG 3 cut(s) 391, 586, 598
BseBI CCWGG 2 cut(s) 749, 877
BseDI CCNNGG 4 cut(s) 486, 875, 876, 1060
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 6 cut(s) 238, 245, 310, 524, 1115, 1416
BseMI GCAATG 3 cut(s) 391, 586, 598
BseMII CTCAG 4 cut(s) 131, 309, 762, 1043
BseNI ACTGG 3 cut(s) 225, 400, 1293
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 2 cut(s) 876, 1409
BseXI GCAGC 4 cut(s) 97, 208, 478, 1019
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 2 cut(s) 331, 1193
BshFI GGCC 5 cut(s) 686, 714, 747, 874, 1352
BsiHKCI CYCGRG 2 cut(s) 305, 915
BsiSI CCGG 2 cut(s) 239, 1417
BslFI GGGAC 2 cut(s) 213, 893
BslI CCNNNNNNNGG 6 cut(s) 238, 245, 310, 524, 1115, 1416
BsmAI GTCTC 1 cut(s) 983
BsmFI GGGAC 2 cut(s) 213, 893
BsmI GAATGC 1 cut(s) 1388
BsnI GGCC 5 cut(s) 686, 714, 747, 874, 1352
BsoBI CYCGRG 2 cut(s) 305, 915
Bsp120I GGGCCC 1 cut(s) 872
Bsp1286I GDGCHC 3 cut(s) 876, 1409, 1424
Bsp143I GATC 2 cut(s) 550, 1393
BspANI GGCC 5 cut(s) 686, 714, 747, 874, 1352
BspCNI CTCAG 4 cut(s) 130, 310, 763, 1042
BspFNI CGCG 2 cut(s) 331, 1193
BspHI TCATGA 2 cut(s) 547, 1222
BspLI GGNNCC 3 cut(s) 874, 1095, 1421
BspMI ACCTGC 1 cut(s) 1294
BsrDI GCAATG 3 cut(s) 391, 586, 598
BsrI ACTGG 3 cut(s) 225, 400, 1293
BssECI CCNNGG 4 cut(s) 486, 875, 876, 1060
BssMI GATC 2 cut(s) 550, 1393
BssT1I CCWWGG 2 cut(s) 486, 1060
Bst2UI CCWGG 2 cut(s) 749, 877
Bst4CI ACNGT 4 cut(s) 141, 219, 808, 1259
BstC8I GCNNGC 5 cut(s) 333, 425, 462, 782, 829
BstDEI CTNAG 5 cut(s) 117, 318, 771, 785, 1029
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 2 cut(s) 331, 1193
BstHHI GCGC 2 cut(s) 331, 1195
BstKTI GATC 2 cut(s) 553, 1396
BstMAI GTCTC 1 cut(s) 983
BstMBI GATC 2 cut(s) 550, 1393
BstMWI GCNNNNNNNGC 6 cut(s) 790, 979, 1007, 1286, 1326, 1413
BstNI CCWGG 2 cut(s) 749, 877
BstNSI RCATGY 1 cut(s) 464
BstPAI GACNNNNGTC 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 747, 875
BstSFI CTRYAG 3 cut(s) 619, 1269, 1275
BstSLI GKGCMC 2 cut(s) 876, 1409
BstUI CGCG 2 cut(s) 331, 1193
BstV1I GCAGC 4 cut(s) 97, 208, 478, 1019
BstV2I GAAGAC 3 cut(s) 339, 809, 1257
BstX2I RGATCY 1 cut(s) 1393
BstYI RGATCY 1 cut(s) 1393
BsuRI GGCC 5 cut(s) 686, 714, 747, 874, 1352
BtrI CACGTC 2 cut(s) 1374, 1404
BtsCI GGATG 1 cut(s) 31
BveI ACCTGC 1 cut(s) 1294
Cac8I GCNNGC 5 cut(s) 333, 425, 462, 782, 829
CciI TCATGA 2 cut(s) 547, 1222
CfoI GCGC 2 cut(s) 331, 1195
Cfr13I GGNCC 3 cut(s) 653, 872, 873
CviAII CATG 9 cut(s) 92, 461, 519, 548, 688, 722, 883, 1223, 1348
DdeI CTNAG 5 cut(s) 117, 318, 771, 785, 1029
DpnI GATC 2 cut(s) 552, 1395
DpnII GATC 2 cut(s) 550, 1393
EaeI YGGCCR 3 cut(s) 684, 712, 745
EciI GGCGGA 2 cut(s) 141, 1014
Eco130I CCWWGG 2 cut(s) 486, 1060
Eco24I GRGCYC 2 cut(s) 876, 1424
Eco47I GGWCC 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 1382
Eco88I CYCGRG 2 cut(s) 305, 915
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 873
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 747, 875
EcoT14I CCWWGG 2 cut(s) 486, 1060
EcoT38I GRGCYC 2 cut(s) 876, 1424
ErhI CCWWGG 2 cut(s) 486, 1060
FaeI CATG 9 cut(s) 95, 464, 522, 551, 691, 725, 886, 1226, 1351
FaqI GGGAC 2 cut(s) 213, 893
FatI CATG 9 cut(s) 91, 460, 518, 547, 687, 721, 882, 1222, 1347
FauI CCCGC 3 cut(s) 139, 240, 242
FauNDI CATATG 2 cut(s) 106, 1412
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 7 cut(s) 111, 155, 197, 236, 492, 1008, 1191
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 2 cut(s) 876, 1424
Fsp4HI GCNGC 7 cut(s) 111, 155, 197, 236, 492, 1008, 1191
FspBI CTAG 3 cut(s) 728, 756, 1004
GlaI GCGC 2 cut(s) 330, 1194
GluI GCNGC 7 cut(s) 111, 155, 197, 236, 492, 1008, 1191
GsaI CCCAGC 1 cut(s) 196
HaeIII GGCC 5 cut(s) 686, 714, 747, 874, 1352
HapII CCGG 2 cut(s) 239, 1417
HhaI GCGC 2 cut(s) 331, 1195
Hin1II CATG 9 cut(s) 95, 464, 522, 551, 691, 725, 886, 1226, 1351
Hin6I GCGC 2 cut(s) 329, 1193
HinP1I GCGC 2 cut(s) 329, 1193
HindIII AAGCTT 1 cut(s) 421
HinfI GANTC 4 cut(s) 175, 344, 448, 613
HpaII CCGG 2 cut(s) 239, 1417
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 393, 943
Hpy188I TCNGA 5 cut(s) 447, 1071, 1371, 1401, 1431
Hpy188III TCNNGA 5 cut(s) 170, 548, 554, 1132, 1223
Hpy8I GTNNAC 2 cut(s) 393, 943
HpyAV CCTTC 6 cut(s) 921, 979, 1066, 1155, 1191, 1227
HpyCH4III ACNGT 4 cut(s) 141, 219, 808, 1259
HpyCH4IV ACGT 2 cut(s) 1373, 1403
HpyF10VI GCNNNNNNNGC 6 cut(s) 790, 979, 1007, 1286, 1326, 1413
HpyF3I CTNAG 5 cut(s) 117, 318, 771, 785, 1029
HpySE526I ACGT 2 cut(s) 1373, 1403
Hsp92II CATG 9 cut(s) 95, 464, 522, 551, 691, 725, 886, 1226, 1351
HspAI GCGC 2 cut(s) 329, 1193
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 2 cut(s) 550, 1393
LmnI GCTCC 2 cut(s) 1285, 1419
Lsp1109I GCAGC 4 cut(s) 97, 208, 478, 1019
LweI GCATC 5 cut(s) 436, 526, 802, 1130, 1375
MaeI CTAG 3 cut(s) 728, 756, 1004
MaeII ACGT 2 cut(s) 1373, 1403
MaeIII GTNAC 2 cut(s) 313, 751
MalI GATC 2 cut(s) 552, 1395
MboI GATC 2 cut(s) 550, 1393
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 1 cut(s) 1393
MhlI GDGCHC 3 cut(s) 876, 1409, 1424
MlsI TGGCCA 3 cut(s) 686, 714, 747
MluNI TGGCCA 3 cut(s) 686, 714, 747
MlyI GAGTC 3 cut(s) 184, 353, 607
MmeI TCCRAC 2 cut(s) 243, 844
Mox20I TGGCCA 3 cut(s) 686, 714, 747
MroXI GAANNNNTTC 1 cut(s) 630
MscI TGGCCA 3 cut(s) 686, 714, 747
MseI TTAA 2 cut(s) 411, 1053
MslI CAYNNNNRTG 2 cut(s) 591, 1116
Msp20I TGGCCA 3 cut(s) 686, 714, 747
MspI CCGG 2 cut(s) 239, 1417
MspR9I CCNGG 2 cut(s) 749, 877
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 1388
MvaI CCWGG 2 cut(s) 749, 877
MvnI CGCG 2 cut(s) 331, 1193
MwoI GCNNNNNNNGC 6 cut(s) 790, 979, 1007, 1286, 1326, 1413
NdeI CATATG 2 cut(s) 106, 1412
NdeII GATC 2 cut(s) 550, 1393
NlaIII CATG 9 cut(s) 95, 464, 522, 551, 691, 725, 886, 1226, 1351
NlaIV GGNNCC 3 cut(s) 874, 1095, 1421
NmeAIII GCCGAG 1 cut(s) 1254
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 1 cut(s) 464
OliI CACNNNNGTG 1 cut(s) 1116
PaeI GCATGC 1 cut(s) 464
PaeR7I CTCGAG 1 cut(s) 305
PagI TCATGA 2 cut(s) 547, 1222
PaqCI CACCTGC 1 cut(s) 1294
PasI CCCWGGG 1 cut(s) 876
PctI GAATGC 1 cut(s) 1388
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 448
PflMI CCANNNNNTGG 1 cut(s) 524
PkrI GCNGC 7 cut(s) 112, 156, 198, 237, 493, 1009, 1192
PleI GAGTC 3 cut(s) 183, 352, 607
PpsI GAGTC 3 cut(s) 183, 352, 607
PshAI GACNNNNGTC 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 747, 875
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 2 cut(s) 747, 875
PspN4I GGNNCC 3 cut(s) 874, 1095, 1421
PspOMI GGGCCC 1 cut(s) 872
PspPI GGNCC 3 cut(s) 653, 872, 873
PspXI VCTCGAGB 1 cut(s) 305
PsuI RGATCY 1 cut(s) 1393
RseI CAYNNNNRTG 2 cut(s) 591, 1116
SaqAI TTAA 2 cut(s) 411, 1053
SatI GCNGC 7 cut(s) 111, 155, 197, 236, 492, 1008, 1191
Sau3AI GATC 2 cut(s) 550, 1393
Sau96I GGNCC 3 cut(s) 653, 872, 873
SchI GAGTC 3 cut(s) 184, 353, 607
ScrFI CCNGG 2 cut(s) 749, 877
SduI GDGCHC 3 cut(s) 876, 1409, 1424
SfaNI GCATC 5 cut(s) 436, 526, 802, 1130, 1375
SfcI CTRYAG 3 cut(s) 619, 1269, 1275
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 2 cut(s) 591, 1116
SmlI CTYRAG 2 cut(s) 305, 341
SmoI CTYRAG 2 cut(s) 305, 341
SphI GCATGC 1 cut(s) 464
SspMI CTAG 3 cut(s) 728, 756, 1004
StyD4I CCNGG 2 cut(s) 747, 875
StyI CCWWGG 2 cut(s) 486, 1060
TaaI ACNGT 4 cut(s) 141, 219, 808, 1259
TaiI ACGT 2 cut(s) 1376, 1406
TaqI TCGA 2 cut(s) 278, 306
TaqII GACCGA 1 cut(s) 670
TauI GCSGC 3 cut(s) 157, 238, 1193
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 2 cut(s) 411, 1053
Tru9I TTAA 2 cut(s) 411, 1053
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 110, 196, 491, 1007
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 3 cut(s) 135, 902, 1263
Van91I CCANNNNNTGG 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 653
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 5 cut(s) 403, 893, 995, 1020, 1336
XceI RCATGY 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 3 cut(s) 728, 756, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.