E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1294 |
| AbsI | CCTCGAGG | 1 cut(s) | 305 |
| Acc36I | ACCTGC | 1 cut(s) | 1294 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 524 |
| AccII | CGCG | 2 cut(s) | 331, 1193 |
| AcoI | YGGCCR | 3 cut(s) | 684, 712, 745 |
| AcsI | RAATTY | 5 cut(s) | 403, 893, 995, 1020, 1336 |
| AcuI | CTGAAG | 1 cut(s) | 1382 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 238, 245, 310, 524, 1115, 1416 |
| AflIII | ACRYGT | 1 cut(s) | 1373 |
| AgsI | TTSAA | 8 cut(s) | 18, 680, 824, 1132, 1140, 1176, 1212, 1341 |
| AjiI | CACGTC | 2 cut(s) | 1374, 1404 |
| AjnI | CCWGG | 2 cut(s) | 747, 875 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 245, 277 |
| AleI | CACNNNNGTG | 1 cut(s) | 1116 |
| AluBI | AGCT | 5 cut(s) | 423, 784, 1051, 1274, 1280 |
| AluI | AGCT | 5 cut(s) | 423, 784, 1051, 1274, 1280 |
| Alw26I | GTCTC | 1 cut(s) | 983 |
| Ama87I | CYCGRG | 2 cut(s) | 305, 915 |
| AoxI | GGCC | 5 cut(s) | 684, 712, 745, 872, 1350 |
| ApaI | GGGCCC | 1 cut(s) | 876 |
| ApeKI | GCWGC | 4 cut(s) | 110, 196, 491, 1007 |
| ApoI | RAATTY | 5 cut(s) | 403, 893, 995, 1020, 1336 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1337, 1369 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 630 |
| AspLEI | GCGC | 2 cut(s) | 331, 1195 |
| AspS9I | GGNCC | 3 cut(s) | 653, 872, 873 |
| AsuHPI | GGTGA | 1 cut(s) | 325 |
| AvaI | CYCGRG | 2 cut(s) | 305, 915 |
| AvaII | GGWCC | 1 cut(s) | 653 |
| BaeGI | GKGCMC | 2 cut(s) | 876, 1409 |
| BalI | TGGCCA | 3 cut(s) | 686, 714, 747 |
| BanII | GRGCYC | 2 cut(s) | 876, 1424 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 751, 783 |
| BbsI | GAAGAC | 3 cut(s) | 339, 809, 1257 |
| BbvCI | CCTCAGC | 1 cut(s) | 117 |
| BbvI | GCAGC | 4 cut(s) | 97, 208, 478, 1019 |
| BccI | CCATC | 8 cut(s) | 20, 217, 737, 863, 1009, 1168, 1204, 1331 |
| BceAI | ACGGC | 1 cut(s) | 958 |
| BciT130I | CCWGG | 2 cut(s) | 749, 877 |
| BclI | TGATCA | 1 cut(s) | 550 |
| BcoDI | GTCTC | 1 cut(s) | 983 |
| BfaI | CTAG | 3 cut(s) | 728, 756, 1004 |
| BfmI | CTRYAG | 3 cut(s) | 619, 1269, 1275 |
| BfuAI | ACCTGC | 1 cut(s) | 1294 |
| BglII | AGATCT | 1 cut(s) | 1393 |
| BisI | GCNGC | 7 cut(s) | 111, 155, 197, 236, 492, 1008, 1191 |
| BlsI | GCNGC | 7 cut(s) | 112, 156, 198, 237, 493, 1009, 1192 |
| Bme1390I | CCNGG | 2 cut(s) | 749, 877 |
| Bme18I | GGWCC | 1 cut(s) | 653 |
| BmeT110I | CYCGRG | 2 cut(s) | 305, 915 |
| BmgBI | CACGTC | 2 cut(s) | 1374, 1404 |
| BmgT120I | GGNCC | 3 cut(s) | 653, 872, 873 |
| BmiI | GGNNCC | 3 cut(s) | 874, 1095, 1421 |
| BmrFI | CCNGG | 2 cut(s) | 749, 877 |
| BmsI | GCATC | 5 cut(s) | 436, 526, 802, 1130, 1375 |
| BoxI | GACNNNNGTC | 1 cut(s) | 343 |
| BpiI | GAAGAC | 3 cut(s) | 339, 809, 1257 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1222, 1254 |
| Bpu10I | CCTNAGC | 1 cut(s) | 117 |
| BpuEI | CTTGAG | 1 cut(s) | 362 |
| BsaJI | CCNNGG | 4 cut(s) | 486, 875, 876, 1060 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 238, 245, 310, 524, 1115, 1416 |
| Bse1I | ACTGG | 3 cut(s) | 225, 400, 1293 |
| Bse3DI | GCAATG | 3 cut(s) | 391, 586, 598 |
| BseBI | CCWGG | 2 cut(s) | 749, 877 |
| BseDI | CCNNGG | 4 cut(s) | 486, 875, 876, 1060 |
| BseGI | GGATG | 1 cut(s) | 31 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 238, 245, 310, 524, 1115, 1416 |
| BseMI | GCAATG | 3 cut(s) | 391, 586, 598 |
| BseMII | CTCAG | 4 cut(s) | 131, 309, 762, 1043 |
| BseNI | ACTGG | 3 cut(s) | 225, 400, 1293 |
| BseRI | GAGGAG | 1 cut(s) | 323 |
| BseSI | GKGCMC | 2 cut(s) | 876, 1409 |
| BseXI | GCAGC | 4 cut(s) | 97, 208, 478, 1019 |
| BseYI | CCCAGC | 1 cut(s) | 192 |
| BsgI | GTGCAG | 1 cut(s) | 96 |
| Bsh1236I | CGCG | 2 cut(s) | 331, 1193 |
| BshFI | GGCC | 5 cut(s) | 686, 714, 747, 874, 1352 |
| BsiHKCI | CYCGRG | 2 cut(s) | 305, 915 |
| BsiSI | CCGG | 2 cut(s) | 239, 1417 |
| BslFI | GGGAC | 2 cut(s) | 213, 893 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 238, 245, 310, 524, 1115, 1416 |
| BsmAI | GTCTC | 1 cut(s) | 983 |
| BsmFI | GGGAC | 2 cut(s) | 213, 893 |
| BsmI | GAATGC | 1 cut(s) | 1388 |
| BsnI | GGCC | 5 cut(s) | 686, 714, 747, 874, 1352 |
| BsoBI | CYCGRG | 2 cut(s) | 305, 915 |
| Bsp120I | GGGCCC | 1 cut(s) | 872 |
| Bsp1286I | GDGCHC | 3 cut(s) | 876, 1409, 1424 |
| Bsp143I | GATC | 2 cut(s) | 550, 1393 |
| BspANI | GGCC | 5 cut(s) | 686, 714, 747, 874, 1352 |
| BspCNI | CTCAG | 4 cut(s) | 130, 310, 763, 1042 |
| BspFNI | CGCG | 2 cut(s) | 331, 1193 |
| BspHI | TCATGA | 2 cut(s) | 547, 1222 |
| BspLI | GGNNCC | 3 cut(s) | 874, 1095, 1421 |
| BspMI | ACCTGC | 1 cut(s) | 1294 |
| BsrDI | GCAATG | 3 cut(s) | 391, 586, 598 |
| BsrI | ACTGG | 3 cut(s) | 225, 400, 1293 |
| BssECI | CCNNGG | 4 cut(s) | 486, 875, 876, 1060 |
| BssMI | GATC | 2 cut(s) | 550, 1393 |
| BssT1I | CCWWGG | 2 cut(s) | 486, 1060 |
| Bst2UI | CCWGG | 2 cut(s) | 749, 877 |
| Bst4CI | ACNGT | 4 cut(s) | 141, 219, 808, 1259 |
| BstC8I | GCNNGC | 5 cut(s) | 333, 425, 462, 782, 829 |
| BstDEI | CTNAG | 5 cut(s) | 117, 318, 771, 785, 1029 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 308 |
| BstF5I | GGATG | 1 cut(s) | 31 |
| BstFNI | CGCG | 2 cut(s) | 331, 1193 |
| BstHHI | GCGC | 2 cut(s) | 331, 1195 |
| BstKTI | GATC | 2 cut(s) | 553, 1396 |
| BstMAI | GTCTC | 1 cut(s) | 983 |
| BstMBI | GATC | 2 cut(s) | 550, 1393 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 790, 979, 1007, 1286, 1326, 1413 |
| BstNI | CCWGG | 2 cut(s) | 749, 877 |
| BstNSI | RCATGY | 1 cut(s) | 464 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 343 |
| BstSCI | CCNGG | 2 cut(s) | 747, 875 |
| BstSFI | CTRYAG | 3 cut(s) | 619, 1269, 1275 |
| BstSLI | GKGCMC | 2 cut(s) | 876, 1409 |
| BstUI | CGCG | 2 cut(s) | 331, 1193 |
| BstV1I | GCAGC | 4 cut(s) | 97, 208, 478, 1019 |
| BstV2I | GAAGAC | 3 cut(s) | 339, 809, 1257 |
| BstX2I | RGATCY | 1 cut(s) | 1393 |
| BstYI | RGATCY | 1 cut(s) | 1393 |
| BsuRI | GGCC | 5 cut(s) | 686, 714, 747, 874, 1352 |
| BtrI | CACGTC | 2 cut(s) | 1374, 1404 |
| BtsCI | GGATG | 1 cut(s) | 31 |
| BveI | ACCTGC | 1 cut(s) | 1294 |
| Cac8I | GCNNGC | 5 cut(s) | 333, 425, 462, 782, 829 |
| CciI | TCATGA | 2 cut(s) | 547, 1222 |
| CfoI | GCGC | 2 cut(s) | 331, 1195 |
| Cfr13I | GGNCC | 3 cut(s) | 653, 872, 873 |
| CviAII | CATG | 9 cut(s) | 92, 461, 519, 548, 688, 722, 883, 1223, 1348 |
| DdeI | CTNAG | 5 cut(s) | 117, 318, 771, 785, 1029 |
| DpnI | GATC | 2 cut(s) | 552, 1395 |
| DpnII | GATC | 2 cut(s) | 550, 1393 |
| EaeI | YGGCCR | 3 cut(s) | 684, 712, 745 |
| EciI | GGCGGA | 2 cut(s) | 141, 1014 |
| Eco130I | CCWWGG | 2 cut(s) | 486, 1060 |
| Eco24I | GRGCYC | 2 cut(s) | 876, 1424 |
| Eco47I | GGWCC | 1 cut(s) | 653 |
| Eco57I | CTGAAG | 1 cut(s) | 1382 |
| Eco88I | CYCGRG | 2 cut(s) | 305, 915 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 308 |
| EcoO109I | RGGNCCY | 1 cut(s) | 873 |
| EcoRI | GAATTC | 1 cut(s) | 403 |
| EcoRII | CCWGG | 2 cut(s) | 747, 875 |
| EcoT14I | CCWWGG | 2 cut(s) | 486, 1060 |
| EcoT38I | GRGCYC | 2 cut(s) | 876, 1424 |
| ErhI | CCWWGG | 2 cut(s) | 486, 1060 |
| FaeI | CATG | 9 cut(s) | 95, 464, 522, 551, 691, 725, 886, 1226, 1351 |
| FaqI | GGGAC | 2 cut(s) | 213, 893 |
| FatI | CATG | 9 cut(s) | 91, 460, 518, 547, 687, 721, 882, 1222, 1347 |
| FauI | CCCGC | 3 cut(s) | 139, 240, 242 |
| FauNDI | CATATG | 2 cut(s) | 106, 1412 |
| FbaI | TGATCA | 1 cut(s) | 550 |
| Fnu4HI | GCNGC | 7 cut(s) | 111, 155, 197, 236, 492, 1008, 1191 |
| FokI | GGATG | 1 cut(s) | 38 |
| FriOI | GRGCYC | 2 cut(s) | 876, 1424 |
| Fsp4HI | GCNGC | 7 cut(s) | 111, 155, 197, 236, 492, 1008, 1191 |
| FspBI | CTAG | 3 cut(s) | 728, 756, 1004 |
| GlaI | GCGC | 2 cut(s) | 330, 1194 |
| GluI | GCNGC | 7 cut(s) | 111, 155, 197, 236, 492, 1008, 1191 |
| GsaI | CCCAGC | 1 cut(s) | 196 |
| HaeIII | GGCC | 5 cut(s) | 686, 714, 747, 874, 1352 |
| HapII | CCGG | 2 cut(s) | 239, 1417 |
| HhaI | GCGC | 2 cut(s) | 331, 1195 |
| Hin1II | CATG | 9 cut(s) | 95, 464, 522, 551, 691, 725, 886, 1226, 1351 |
| Hin6I | GCGC | 2 cut(s) | 329, 1193 |
| HinP1I | GCGC | 2 cut(s) | 329, 1193 |
| HindIII | AAGCTT | 1 cut(s) | 421 |
| HinfI | GANTC | 4 cut(s) | 175, 344, 448, 613 |
| HpaII | CCGG | 2 cut(s) | 239, 1417 |
| HphI | GGTGA | 1 cut(s) | 325 |
| Hpy166II | GTNNAC | 2 cut(s) | 393, 943 |
| Hpy188I | TCNGA | 5 cut(s) | 447, 1071, 1371, 1401, 1431 |
| Hpy188III | TCNNGA | 5 cut(s) | 170, 548, 554, 1132, 1223 |
| Hpy8I | GTNNAC | 2 cut(s) | 393, 943 |
| HpyAV | CCTTC | 6 cut(s) | 921, 979, 1066, 1155, 1191, 1227 |
| HpyCH4III | ACNGT | 4 cut(s) | 141, 219, 808, 1259 |
| HpyCH4IV | ACGT | 2 cut(s) | 1373, 1403 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 790, 979, 1007, 1286, 1326, 1413 |
| HpyF3I | CTNAG | 5 cut(s) | 117, 318, 771, 785, 1029 |
| HpySE526I | ACGT | 2 cut(s) | 1373, 1403 |
| Hsp92II | CATG | 9 cut(s) | 95, 464, 522, 551, 691, 725, 886, 1226, 1351 |
| HspAI | GCGC | 2 cut(s) | 329, 1193 |
| Ksp22I | TGATCA | 1 cut(s) | 550 |
| Kzo9I | GATC | 2 cut(s) | 550, 1393 |
| LmnI | GCTCC | 2 cut(s) | 1285, 1419 |
| Lsp1109I | GCAGC | 4 cut(s) | 97, 208, 478, 1019 |
| LweI | GCATC | 5 cut(s) | 436, 526, 802, 1130, 1375 |
| MaeI | CTAG | 3 cut(s) | 728, 756, 1004 |
| MaeII | ACGT | 2 cut(s) | 1373, 1403 |
| MaeIII | GTNAC | 2 cut(s) | 313, 751 |
| MalI | GATC | 2 cut(s) | 552, 1395 |
| MboI | GATC | 2 cut(s) | 550, 1393 |
| MfeI | CAATTG | 1 cut(s) | 816 |
| MflI | RGATCY | 1 cut(s) | 1393 |
| MhlI | GDGCHC | 3 cut(s) | 876, 1409, 1424 |
| MlsI | TGGCCA | 3 cut(s) | 686, 714, 747 |
| MluNI | TGGCCA | 3 cut(s) | 686, 714, 747 |
| MlyI | GAGTC | 3 cut(s) | 184, 353, 607 |
| MmeI | TCCRAC | 2 cut(s) | 243, 844 |
| Mox20I | TGGCCA | 3 cut(s) | 686, 714, 747 |
| MroXI | GAANNNNTTC | 1 cut(s) | 630 |
| MscI | TGGCCA | 3 cut(s) | 686, 714, 747 |
| MseI | TTAA | 2 cut(s) | 411, 1053 |
| MslI | CAYNNNNRTG | 2 cut(s) | 591, 1116 |
| Msp20I | TGGCCA | 3 cut(s) | 686, 714, 747 |
| MspI | CCGG | 2 cut(s) | 239, 1417 |
| MspR9I | CCNGG | 2 cut(s) | 749, 877 |
| MunI | CAATTG | 1 cut(s) | 816 |
| Mva1269I | GAATGC | 1 cut(s) | 1388 |
| MvaI | CCWGG | 2 cut(s) | 749, 877 |
| MvnI | CGCG | 2 cut(s) | 331, 1193 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 790, 979, 1007, 1286, 1326, 1413 |
| NdeI | CATATG | 2 cut(s) | 106, 1412 |
| NdeII | GATC | 2 cut(s) | 550, 1393 |
| NlaIII | CATG | 9 cut(s) | 95, 464, 522, 551, 691, 725, 886, 1226, 1351 |
| NlaIV | GGNNCC | 3 cut(s) | 874, 1095, 1421 |
| NmeAIII | GCCGAG | 1 cut(s) | 1254 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| NspI | RCATGY | 1 cut(s) | 464 |
| OliI | CACNNNNGTG | 1 cut(s) | 1116 |
| PaeI | GCATGC | 1 cut(s) | 464 |
| PaeR7I | CTCGAG | 1 cut(s) | 305 |
| PagI | TCATGA | 2 cut(s) | 547, 1222 |
| PaqCI | CACCTGC | 1 cut(s) | 1294 |
| PasI | CCCWGGG | 1 cut(s) | 876 |
| PctI | GAATGC | 1 cut(s) | 1388 |
| PdmI | GAANNNNTTC | 1 cut(s) | 630 |
| PfeI | GAWTC | 1 cut(s) | 448 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 524 |
| PkrI | GCNGC | 7 cut(s) | 112, 156, 198, 237, 493, 1009, 1192 |
| PleI | GAGTC | 3 cut(s) | 183, 352, 607 |
| PpsI | GAGTC | 3 cut(s) | 183, 352, 607 |
| PshAI | GACNNNNGTC | 1 cut(s) | 343 |
| Psp6I | CCWGG | 2 cut(s) | 747, 875 |
| PspFI | CCCAGC | 1 cut(s) | 192 |
| PspGI | CCWGG | 2 cut(s) | 747, 875 |
| PspN4I | GGNNCC | 3 cut(s) | 874, 1095, 1421 |
| PspOMI | GGGCCC | 1 cut(s) | 872 |
| PspPI | GGNCC | 3 cut(s) | 653, 872, 873 |
| PspXI | VCTCGAGB | 1 cut(s) | 305 |
| PsuI | RGATCY | 1 cut(s) | 1393 |
| RseI | CAYNNNNRTG | 2 cut(s) | 591, 1116 |
| SaqAI | TTAA | 2 cut(s) | 411, 1053 |
| SatI | GCNGC | 7 cut(s) | 111, 155, 197, 236, 492, 1008, 1191 |
| Sau3AI | GATC | 2 cut(s) | 550, 1393 |
| Sau96I | GGNCC | 3 cut(s) | 653, 872, 873 |
| SchI | GAGTC | 3 cut(s) | 184, 353, 607 |
| ScrFI | CCNGG | 2 cut(s) | 749, 877 |
| SduI | GDGCHC | 3 cut(s) | 876, 1409, 1424 |
| SfaNI | GCATC | 5 cut(s) | 436, 526, 802, 1130, 1375 |
| SfcI | CTRYAG | 3 cut(s) | 619, 1269, 1275 |
| Sfr274I | CTCGAG | 1 cut(s) | 305 |
| SinI | GGWCC | 1 cut(s) | 653 |
| SlaI | CTCGAG | 1 cut(s) | 305 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 591, 1116 |
| SmlI | CTYRAG | 2 cut(s) | 305, 341 |
| SmoI | CTYRAG | 2 cut(s) | 305, 341 |
| SphI | GCATGC | 1 cut(s) | 464 |
| SspMI | CTAG | 3 cut(s) | 728, 756, 1004 |
| StyD4I | CCNGG | 2 cut(s) | 747, 875 |
| StyI | CCWWGG | 2 cut(s) | 486, 1060 |
| TaaI | ACNGT | 4 cut(s) | 141, 219, 808, 1259 |
| TaiI | ACGT | 2 cut(s) | 1376, 1406 |
| TaqI | TCGA | 2 cut(s) | 278, 306 |
| TaqII | GACCGA | 1 cut(s) | 670 |
| TauI | GCSGC | 3 cut(s) | 157, 238, 1193 |
| TfiI | GAWTC | 1 cut(s) | 448 |
| Tru1I | TTAA | 2 cut(s) | 411, 1053 |
| Tru9I | TTAA | 2 cut(s) | 411, 1053 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| TseI | GCWGC | 4 cut(s) | 110, 196, 491, 1007 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 3 cut(s) | 135, 902, 1263 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 524 |
| VpaK11BI | GGWCC | 1 cut(s) | 653 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 308 |
| XapI | RAATTY | 5 cut(s) | 403, 893, 995, 1020, 1336 |
| XceI | RCATGY | 1 cut(s) | 464 |
| XhoI | CTCGAG | 1 cut(s) | 305 |
| XmnI | GAANNNNTTC | 1 cut(s) | 630 |
| XspI | CTAG | 3 cut(s) | 728, 756, 1004 |