Rh7AG123300

E3 ubiquitin-protein ligase RGLG2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000761
Physical Location & Seq
Reverse (-)
9667151 .. 9669719
2569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG123300.1

Sequence Viewer

Length: 1167 bp
ATGGGTGGGATAACTTCAAAAGCTAGTACATCGAGACAGTCTTCTTTTGCGTCTAGATCATCTTCTTGGAATCATCAGAATTATGAACAGGCGCCGTATGCACAACCATATGCACCTCCAAGCCATGACGCTGGGCAACAGCAGCATTATGCACCTCCATCTCAAAGCTATGGTGGCGGTGCTTGGGCATCAGAGTCAAAAAAGAAGTTGGAAAGAAAGTATTCGAAGATAGATGATAATTACAACAGCCTGGACCAGGTCACAGATGCATTGGCGCGTGCTGGTCTAGAGTCATCAAATCTTATTGTTGGTATTGATTTCACAAAGAGCAATGAGTGGACAGGTGCTAGGTCATTTCACCGGAAAAGCTTGCATCACATTGGAGAAGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGGAAAACATTATCTTCCTTCGATGAGGATAACATGATTCCTTGTTATGGATTTGGAGATGCATCAACCCACGACCAAGAAGTTTTCAGTTTCTACCCGGATGAGGACACTTATTGCAACGGATTTGAAGAAGTTTTAAGACGATATAGAGAATTAGTCCCTCAGCTACGACTTGCTGGGCCCACATCATTTGCCCCTATCGTTGAAATGGCCATCACTATAGTTGAACAGAGTGGTGGTCAGTATCATGTGTTAGTGATAATAGCTGATGGGCAGTTTGTGAATTTTACAGACATTATGTCAAAGAATACAGACCGCTCAAGAAAAGAAGCAGAATTTGCTCTTGCAGCCTTGATGGAAATACCCTCTCAGTATAAAGCAACGCTAGAGCTTGGTATATTGGGTGTTACAAGAGGGAAGGCTGTAGATAGGATCCCGCTTCCCCCTCCTCATTATGGTTCGGCTTCTTTTGGCACCTCAAAACCTTCACGTGCAAATAGTTTTCGTCCAACTGCACCTTCCAGGCCACAACATCAGGATGTTAGCAATAGCAGAGTGCCTCCTGCTGCTTCTGCTTCTGCTTCCTCTTCTGCTTCTGACAATCATGTCTGTCCCATTTGCCTAACCGATCCAAAGAATATGGCATTTGGTTGTGGACATCAGACATGCTGCGACTGTGGACAAGATCTTCAGTTATGCCCGATTTGCAGAAGTACCATCGAAACCAGGATAAAGCTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Copine zf-C3HC4_3

Protein Analysis

388

Amino Acids

42.59

Weight (kDa)

6.06

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Copine PF07002 123 - 233 5.7e-38 Copine
Copine PF07002 233 - 274 4.7e-06 Copine
zf-C3HC4_3 PF13920 342 - 383 1.9e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1028
AccB1I GGYRCC 2 cut(s) 91, 896
AccBSI CCGCTC 1 cut(s) 741
AccII CGCG 1 cut(s) 277
AciI CCGC 3 cut(s) 177, 739, 860
AclWI GGATC 3 cut(s) 850, 863, 1046
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 2 cut(s) 706, 758
AcuI CTGAAG 1 cut(s) 1097
AcvI CACGTG 1 cut(s) 914
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 2 cut(s) 28, 1138
AfiI CCNNNNNNNGG 4 cut(s) 256, 470, 526, 878
AgsI TTSAA 4 cut(s) 18, 551, 629, 650
AhdI GACNNNNNGTC 1 cut(s) 721
AjnI CCWGG 4 cut(s) 249, 255, 944, 1148
AjuI GAANNNNNNNTTGG 2 cut(s) 925, 957
AluBI AGCT 7 cut(s) 23, 168, 369, 589, 689, 814, 1159
AluI AGCT 7 cut(s) 23, 168, 369, 589, 689, 814, 1159
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 3 cut(s) 850, 863, 1046
AoxI GGCC 3 cut(s) 602, 633, 947
ApaI GGGCCC 1 cut(s) 606
ApeKI GCWGC 4 cut(s) 142, 770, 989, 1092
ApoI RAATTY 2 cut(s) 706, 758
Asp700I GAANNNNTTC 1 cut(s) 220
AspLEI GCGC 2 cut(s) 94, 277
AspS9I GGNCC 3 cut(s) 253, 602, 603
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 350
AsuII TTCGAA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 253
BaeGI GKGCMC 1 cut(s) 606
BalI TGGCCA 1 cut(s) 635
BamHI GGATCC 1 cut(s) 855
BanI GGYRCC 2 cut(s) 91, 896
BanII GRGCYC 1 cut(s) 606
BbrPI CACGTG 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 4 cut(s) 154, 782, 976, 1079
BccI CCATC 5 cut(s) 166, 644, 686, 772, 1148
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 4 cut(s) 251, 257, 946, 1150
BcnI CCSGG 1 cut(s) 521
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 5 cut(s) 24, 54, 287, 348, 809
BfmI CTRYAG 2 cut(s) 642, 846
BfoI RGCGCY 1 cut(s) 95
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 4 cut(s) 143, 771, 990, 1093
BlsI GCNGC 4 cut(s) 144, 772, 991, 1094
Bme1390I CCNGG 5 cut(s) 251, 257, 521, 946, 1150
Bme18I GGWCC 1 cut(s) 253
BmeRI GACNNNNNGTC 1 cut(s) 721
BmgT120I GGNCC 3 cut(s) 253, 602, 603
BmiI GGNNCC 4 cut(s) 93, 604, 857, 898
BmrFI CCNGG 5 cut(s) 251, 257, 521, 946, 1150
BmsI GCATC 5 cut(s) 197, 256, 382, 472, 494
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 727
BpuMI CCSGG 1 cut(s) 521
BsaAI YACGTR 1 cut(s) 914
BsaHI GRCGYC 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 360
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 470, 526, 878
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 4 cut(s) 251, 257, 946, 1150
BseGI GGATG 2 cut(s) 529, 967
BseLI CCNNNNNNNGG 4 cut(s) 256, 470, 526, 878
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 599, 806
BseRI GAGGAG 1 cut(s) 861
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 4 cut(s) 154, 782, 976, 1079
BseYI CCCAGC 2 cut(s) 131, 599
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 3 cut(s) 604, 635, 949
BshNI GGYRCC 2 cut(s) 91, 896
BsiSI CCGG 2 cut(s) 361, 521
BslFI GGGAC 2 cut(s) 566, 1020
BslI CCNNNNNNNGG 4 cut(s) 256, 470, 526, 878
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 2 cut(s) 566, 1020
BsnI GGCC 3 cut(s) 604, 635, 949
Bsp119I TTCGAA 1 cut(s) 224
Bsp120I GGGCCC 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 4 cut(s) 56, 855, 1051, 1108
BspACI CCGC 3 cut(s) 177, 739, 860
BspANI GGCC 3 cut(s) 604, 635, 949
BspCNI CTCAG 2 cut(s) 598, 805
BspFNI CGCG 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 93, 604, 857, 898
BspPI GGATC 3 cut(s) 850, 863, 1046
BspQI GCTCTTC 1 cut(s) 381
BspT104I TTCGAA 1 cut(s) 224
BspT107I GGYRCC 2 cut(s) 91, 896
BsrBI CCGCTC 1 cut(s) 741
BsrDI GCAATG 1 cut(s) 337
BssMI GATC 4 cut(s) 56, 855, 1051, 1108
BssNI GRCGYC 1 cut(s) 92
Bst2UI CCWGG 4 cut(s) 251, 257, 946, 1150
Bst4CI ACNGT 2 cut(s) 39, 1100
Bst6I CTCTTC 2 cut(s) 381, 1015
BstACI GRCGYC 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBAI YACGTR 1 cut(s) 914
BstBI TTCGAA 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 279, 371
BstDEI CTNAG 2 cut(s) 585, 792
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 529, 967
BstFNI CGCG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 2 cut(s) 94, 277
BstKTI GATC 4 cut(s) 59, 858, 1054, 1111
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 4 cut(s) 56, 855, 1051, 1108
BstMWI GCNNNNNNNGC 7 cut(s) 98, 142, 174, 761, 770, 995, 1128
BstNI CCWGG 4 cut(s) 251, 257, 946, 1150
BstNSI RCATGY 1 cut(s) 1092
BstSCI CCNGG 5 cut(s) 249, 255, 519, 944, 1148
BstSFI CTRYAG 2 cut(s) 642, 846
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 4 cut(s) 154, 782, 976, 1079
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 2 cut(s) 855, 1108
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 2 cut(s) 855, 1108
BsuRI GGCC 3 cut(s) 604, 635, 949
BtsCI GGATG 2 cut(s) 529, 967
Cac8I GCNNGC 2 cut(s) 279, 371
CfoI GCGC 2 cut(s) 94, 277
Cfr13I GGNCC 3 cut(s) 253, 602, 603
CseI GACGC 2 cut(s) 39, 137
CsiI ACCWGGT 1 cut(s) 255
Csp6I GTAC 2 cut(s) 27, 1137
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviAII CATG 5 cut(s) 125, 457, 671, 1028, 1089
CviQI GTAC 2 cut(s) 27, 1137
DdeI CTNAG 2 cut(s) 585, 792
DinI GGCGCC 1 cut(s) 93
DpnI GATC 4 cut(s) 58, 857, 1053, 1110
DpnII GATC 4 cut(s) 56, 855, 1051, 1108
DrdI GACNNNNNNGTC 1 cut(s) 1028
DriI GACNNNNNGTC 1 cut(s) 721
DseDI GACNNNNNNGTC 1 cut(s) 1028
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 2 cut(s) 381, 1015
Eam1105I GACNNNNNGTC 1 cut(s) 721
EarI CTCTTC 2 cut(s) 381, 1015
Eco24I GRGCYC 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 1097
Eco72I CACGTG 1 cut(s) 914
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoRII CCWGG 4 cut(s) 249, 255, 944, 1148
EcoT22I ATGCAT 2 cut(s) 271, 487
EcoT38I GRGCYC 1 cut(s) 606
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
FaeI CATG 5 cut(s) 128, 460, 674, 1031, 1092
FaqI GGGAC 2 cut(s) 566, 1020
FatI CATG 5 cut(s) 124, 456, 670, 1027, 1088
FauI CCCGC 1 cut(s) 867
FauNDI CATATG 1 cut(s) 109
Fnu4HI GCNGC 4 cut(s) 143, 771, 990, 1093
FokI GGATG 2 cut(s) 536, 974
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 4 cut(s) 143, 771, 990, 1093
FspBI CTAG 5 cut(s) 24, 54, 287, 348, 809
GlaI GCGC 2 cut(s) 93, 276
GluI GCNGC 4 cut(s) 143, 771, 990, 1093
GsaI CCCAGC 2 cut(s) 135, 603
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 3 cut(s) 604, 635, 949
HapII CCGG 2 cut(s) 361, 521
HgaI GACGC 2 cut(s) 39, 137
HhaI GCGC 2 cut(s) 94, 277
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 5 cut(s) 128, 460, 674, 1031, 1092
Hin6I GCGC 2 cut(s) 92, 275
HinP1I GCGC 2 cut(s) 92, 275
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 4 cut(s) 70, 194, 290, 460
HpaII CCGG 2 cut(s) 361, 521
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 339, 1079, 1103
Hpy188I TCNGA 4 cut(s) 78, 193, 1021, 1086
Hpy188III TCNNGA 5 cut(s) 33, 54, 287, 744, 959
Hpy8I GTNNAC 3 cut(s) 339, 1079, 1103
HpyAV CCTTC 4 cut(s) 451, 835, 918, 951
HpyCH4III ACNGT 2 cut(s) 39, 1100
HpyCH4IV ACGT 1 cut(s) 913
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 142, 174, 761, 770, 995, 1128
HpyF3I CTNAG 2 cut(s) 585, 792
HpySE526I ACGT 1 cut(s) 913
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 5 cut(s) 128, 460, 674, 1031, 1092
HspAI GCGC 2 cut(s) 92, 275
KasI GGCGCC 1 cut(s) 91
Kzo9I GATC 4 cut(s) 56, 855, 1051, 1108
LguI GCTCTTC 1 cut(s) 381
Lsp1109I GCAGC 4 cut(s) 154, 782, 976, 1079
LweI GCATC 5 cut(s) 197, 256, 382, 472, 494
MabI ACCWGGT 1 cut(s) 255
MaeI CTAG 5 cut(s) 24, 54, 287, 348, 809
MaeII ACGT 1 cut(s) 913
MaeIII GTNAC 2 cut(s) 259, 829
MalI GATC 4 cut(s) 58, 857, 1053, 1110
MbiI CCGCTC 1 cut(s) 741
MboI GATC 4 cut(s) 56, 855, 1051, 1108
MboII GAAGA 8 cut(s) 33, 54, 238, 398, 429, 563, 1002, 1103
MflI RGATCY 2 cut(s) 855, 1108
MhlI GDGCHC 1 cut(s) 606
MlsI TGGCCA 1 cut(s) 635
MluCI AATT 6 cut(s) 79, 238, 417, 575, 706, 758
MluNI TGGCCA 1 cut(s) 635
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 2 cut(s) 203, 299
MmeI TCCRAC 2 cut(s) 189, 956
Mox20I TGGCCA 1 cut(s) 635
Mph1103I ATGCAT 2 cut(s) 271, 487
MroXI GAANNNNTTC 1 cut(s) 220
MscI TGGCCA 1 cut(s) 635
MseI TTAA 1 cut(s) 560
MslI CAYNNNNRTG 1 cut(s) 960
Msp20I TGGCCA 1 cut(s) 635
MspI CCGG 2 cut(s) 361, 521
MspR9I CCNGG 5 cut(s) 251, 257, 521, 946, 1150
MvaI CCWGG 4 cut(s) 251, 257, 946, 1150
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 7 cut(s) 98, 142, 174, 761, 770, 995, 1128
NarI GGCGCC 1 cut(s) 92
NciI CCSGG 1 cut(s) 521
NdeI CATATG 1 cut(s) 109
NdeII GATC 4 cut(s) 56, 855, 1051, 1108
NlaIII CATG 5 cut(s) 128, 460, 674, 1031, 1092
NlaIV GGNNCC 4 cut(s) 93, 604, 857, 898
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 2 cut(s) 271, 487
NspI RCATGY 1 cut(s) 1092
NspV TTCGAA 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 70, 460
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 4 cut(s) 144, 772, 991, 1094
PleI GAGTC 2 cut(s) 202, 298
PluTI GGCGCC 1 cut(s) 95
PmaCI CACGTG 1 cut(s) 914
PmlI CACGTG 1 cut(s) 914
PpsI GAGTC 2 cut(s) 202, 298
Ppu21I YACGTR 1 cut(s) 914
Psp6I CCWGG 4 cut(s) 249, 255, 944, 1148
PspCI CACGTG 1 cut(s) 914
PspFI CCCAGC 2 cut(s) 131, 599
PspGI CCWGG 4 cut(s) 249, 255, 944, 1148
PspN4I GGNNCC 4 cut(s) 93, 604, 857, 898
PspOMI GGGCCC 1 cut(s) 602
PspPI GGNCC 3 cut(s) 253, 602, 603
PsuI RGATCY 2 cut(s) 855, 1108
PsyI GACNNNGTC 1 cut(s) 257
RsaI GTAC 2 cut(s) 28, 1138
RsaNI GTAC 2 cut(s) 27, 1137
RseI CAYNNNNRTG 1 cut(s) 960
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 4 cut(s) 143, 771, 990, 1093
Sau3AI GATC 4 cut(s) 56, 855, 1051, 1108
Sau96I GGNCC 3 cut(s) 253, 602, 603
SchI GAGTC 2 cut(s) 203, 299
ScrFI CCNGG 5 cut(s) 251, 257, 521, 946, 1150
SduI GDGCHC 1 cut(s) 606
SexAI ACCWGGT 1 cut(s) 255
SfaNI GCATC 5 cut(s) 197, 256, 382, 472, 494
SfcI CTRYAG 2 cut(s) 642, 846
SfoI GGCGCC 1 cut(s) 93
SfuI TTCGAA 1 cut(s) 224
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 1 cut(s) 742
SmoI CTYRAG 1 cut(s) 742
Sse9I AATT 6 cut(s) 79, 238, 417, 575, 706, 758
SsiI CCGC 3 cut(s) 177, 739, 860
SspDI GGCGCC 1 cut(s) 91
SspMI CTAG 5 cut(s) 24, 54, 287, 348, 809
StyD4I CCNGG 5 cut(s) 249, 255, 519, 944, 1148
TaaI ACNGT 2 cut(s) 39, 1100
TaiI ACGT 1 cut(s) 916
TaqI TCGA 4 cut(s) 32, 224, 444, 1143
TasI AATT 6 cut(s) 79, 238, 417, 575, 706, 758
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 2 cut(s) 70, 460
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 4 cut(s) 142, 770, 989, 1092
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 99, 417
TspGWI ACGGA 1 cut(s) 558
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 253
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 2 cut(s) 706, 758
XbaI TCTAGA 2 cut(s) 53, 286
XceI RCATGY 1 cut(s) 1092
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 5 cut(s) 24, 54, 287, 348, 809
Zsp2I ATGCAT 2 cut(s) 271, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.