Prupe.5G163000_v2.0.a1

Domain of unknown function (DUF1929)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000761
Physical Location & Seq
Reverse (-)
14243631 .. 14245233
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G163000.1

Sequence Viewer

Length: 1545 bp
ATGCATATGGCATTGACACATGACAACACTGTCGTTATATTTGATCAAACAGAAGCTGGCCCCTCTGTGTACAGGCTTCGAAGGCGCCACAATGGAAACAGATGCACAGAGAGCCATGACGATTTAGCAGACTCATCCTGCTATGCTCACTCCGTGGAGTATGACATTTCAAGCAACAAAGTTAGACCTCTGAGGCTTTACACTGATACCTGGTGCTCCTCAGGCTCTTTCTTGAGCAACGGGACACTTCTACAAACGGGTGGATATGGAAGTGGCACTCGAAGAATTCGATACTTCAAGCCTTGTGGGGATGGCCAGTGTGATTGGAGGCAATCGGAGAGATCACTGGCTGATGATCGTTGGTACGCTTCCAATCAATTGCTCCCAGAACATGATAGGATCATTGTGGTTGGTGGAAGAAGGACCTTTACTTATGAATTTGTACCAAAAATGTCTTCCAATGAAGGCTCTCATGACCTATCATTCTTGCACCAAACTTATGACAGAAGTGAAGGAGGGAACAACCTCTATCCCTTCCTTCACCTCTCTTCGGATGGAAATTTGTTCATCTTTGCCAACCGGGACTCCATTCTCTTCAATTACAGAAGTAACATAGTGATCAAGACCTTCCCTCGAATACCCGGTGATGGCTCTAGGAACTATCCAGGCTCTGGCTCATCAGTGATCCTCCCATTAGACCACACAAACAATTTCGAAAGAATGGAAGTCATGGTGTGTGGTGGTGCTGCCTCTGGAGCCCACAGAGCAGCAGGACAAAACAGATTCTTGAAAGGCCTAAGCTCCTGTGGAAGAATGGTGATCACAGGCAACAGACACAAGTGGAACATGGAGAACATGCCGGGCTCTCGTCTTCTCAGCGACATGCTGATCCTCCCAACTGGGAATGTTTTGATCATCAATGGTGCCAAAAGAGGCTCTGGAGGATGGAACAATGCAAGAAATGCTTCCCTCCAGCCTTATCTCTACAACCCAAATCACAAATTAGGCAAAAGATTCTCTGTCCTCAAGTCCACAAAAATTGCTAGAATGTATCACTCCTCAGCCATTCTTTTACCTGATGGGAGGGTCTTGGTTGGTGGGGGCAACCCTCATGAATGCTACACTTTCAGCAATGTGGCCTACCCAACTGAGCTTAGGCTCCAAGCATTTGCCCCACACTACATGGGAAGGCAATACCATACATATAGACCAATAAATTTGACCATAAACTATGGCCATGGTGATCTCTCTGGTGTAAGGTATGGGGTAGATTTTAATGTGAGCTTTTGGTTGGGGAGGAAGCCAAGCAAAGTGGTGGAGTTTAATGCTTATGCACCACCATTCACAACACACTCCATATCCATGAACCAGAGGTTGCTGAAATTGAGGTGCAAGAAAGTGGTGAGAGCTGAAGGTGGATTGGTGCATGCAGTTTTGGAGGCTCCCCCATCTCCTAATGTTGCTCCCTCTGGTTATTATATGCTCACTGTTGTGAATGGTGGAATTCCTAGCATATCTCAGTGGGTTAGGTTCCTACATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

515

Amino Acids

57.56

Weight (kDa)

9.55

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 29
AccB1I GGYRCC 2 cut(s) 84, 923
AccB7I CCANNNNNTGG 1 cut(s) 671
AclWI GGATC 3 cut(s) 407, 679, 883
AcoI YGGCCR 2 cut(s) 313, 1234
AcsI RAATTY 5 cut(s) 285, 437, 559, 1216, 1503
AcuI CTGAAG 1 cut(s) 1431
AcyI GRCGYC 1 cut(s) 85
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 3 cut(s) 71, 365, 444
AfiI CCNNNNNNNGG 3 cut(s) 550, 647, 671
AgsI TTSAA 4 cut(s) 171, 298, 598, 790
AjnI CCWGG 2 cut(s) 209, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AleI CACNNNNGTG 1 cut(s) 1490
AluBI AGCT 5 cut(s) 56, 801, 1153, 1284, 1409
AluI AGCT 5 cut(s) 56, 801, 1153, 1284, 1409
Alw21I GWGCWC 1 cut(s) 218
AlwI GGATC 3 cut(s) 407, 679, 883
AlwNI CAGNNNCTG 2 cut(s) 56, 671
AoxI GGCC 5 cut(s) 58, 313, 793, 1137, 1234
ApeKI GCWGC 2 cut(s) 746, 767
ApoI RAATTY 5 cut(s) 285, 437, 559, 1216, 1503
Asp700I GAANNNNTTC 1 cut(s) 964
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 59, 423
AsuC2I CCSGG 3 cut(s) 581, 642, 861
AsuHPI GGTGA 5 cut(s) 533, 656, 829, 1253, 1414
AsuII TTCGAA 2 cut(s) 79, 714
AvaII GGWCC 1 cut(s) 423
AxyI CCTNAGG 1 cut(s) 220
BalI TGGCCA 2 cut(s) 315, 1236
BanI GGYRCC 2 cut(s) 84, 923
BanII GRGCYC 2 cut(s) 760, 866
BarI GAAGNNNNNNTAC 2 cut(s) 412, 444
BbsI GAAGAC 2 cut(s) 447, 863
Bbv12I GWGCWC 1 cut(s) 218
BbvCI CCTCAGC 1 cut(s) 1060
BbvI GCAGC 2 cut(s) 733, 779
BccI CCATC 6 cut(s) 305, 548, 641, 939, 1073, 1456
BciT130I CCWGG 2 cut(s) 211, 666
BclI TGATCA 4 cut(s) 43, 618, 819, 912
BcnI CCSGG 3 cut(s) 581, 642, 861
BfaI CTAG 3 cut(s) 654, 1044, 1509
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 2 cut(s) 747, 768
BlsI GCNGC 2 cut(s) 748, 769
Bme1390I CCNGG 5 cut(s) 211, 581, 642, 666, 861
Bme18I GGWCC 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 59, 423
BmiI GGNNCC 7 cut(s) 61, 86, 757, 925, 1160, 1443, 1532
BmrFI CCNGG 5 cut(s) 211, 581, 642, 666, 861
BmrI ACTGGG 1 cut(s) 909
BmsI GCATC 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 909
BpiI GAAGAC 2 cut(s) 447, 863
BpmI CTGGAG 3 cut(s) 774, 956, 960
Bpu10I CCTNAGC 3 cut(s) 797, 1060, 1154
Bpu14I TTCGAA 2 cut(s) 79, 714
BpuEI CTTGAG 2 cut(s) 253, 1010
BpuMI CCSGG 3 cut(s) 581, 642, 861
BsaHI GRCGYC 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 153, 1237
BsaXI ACNNNNNCTCC 2 cut(s) 569, 599
Bsc4I CCNNNNNNNGG 3 cut(s) 550, 647, 671
Bse1I ACTGG 3 cut(s) 316, 351, 904
Bse21I CCTNAGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 1138
BseBI CCWGG 2 cut(s) 211, 666
BseDI CCNNGG 2 cut(s) 153, 1237
BseGI GGATG 4 cut(s) 134, 316, 559, 950
BseLI CCNNNNNNNGG 3 cut(s) 550, 647, 671
BseMI GCAATG 1 cut(s) 1138
BseMII CTCAG 6 cut(s) 182, 234, 889, 1074, 1140, 1532
BseNI ACTGG 3 cut(s) 316, 351, 904
BseRI GAGGAG 2 cut(s) 208, 1048
BseXI GCAGC 2 cut(s) 733, 779
BshFI GGCC 5 cut(s) 60, 315, 795, 1139, 1236
BshNI GGYRCC 2 cut(s) 84, 923
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 3 cut(s) 580, 642, 860
BslFI GGGAC 2 cut(s) 256, 596
BslI CCNNNNNNNGG 3 cut(s) 550, 647, 671
BsmFI GGGAC 2 cut(s) 256, 596
BsmI GAATGC 1 cut(s) 1121
BsnI GGCC 5 cut(s) 60, 315, 795, 1139, 1236
Bsp119I TTCGAA 2 cut(s) 79, 714
Bsp1286I GDGCHC 3 cut(s) 218, 760, 866
Bsp1407I TGTACA 1 cut(s) 69
Bsp19I CCATGG 1 cut(s) 1237
BspANI GGCC 5 cut(s) 60, 315, 795, 1139, 1236
BspCNI CTCAG 6 cut(s) 183, 233, 888, 1073, 1141, 1531
BspHI TCATGA 2 cut(s) 472, 1111
BspLI GGNNCC 7 cut(s) 61, 86, 757, 925, 1160, 1443, 1532
BspPI GGATC 3 cut(s) 407, 679, 883
BspT104I TTCGAA 2 cut(s) 79, 714
BspT107I GGYRCC 2 cut(s) 84, 923
BsrDI GCAATG 1 cut(s) 1138
BsrGI TGTACA 1 cut(s) 69
BsrI ACTGG 3 cut(s) 316, 351, 904
BssECI CCNNGG 2 cut(s) 153, 1237
BssNI GRCGYC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 1237
Bst2UI CCWGG 2 cut(s) 211, 666
Bst4CI ACNGT 2 cut(s) 31, 1489
Bst6I CTCTTC 2 cut(s) 553, 599
BstACI GRCGYC 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 962
BstAUI TGTACA 1 cut(s) 69
BstBI TTCGAA 2 cut(s) 79, 714
BstC8I GCNNGC 2 cut(s) 58, 1428
BstDEI CTNAG 8 cut(s) 191, 220, 797, 875, 1060, 1149, 1154, 1518
BstDSI CCRYGG 2 cut(s) 153, 1237
BstF5I GGATG 4 cut(s) 134, 316, 559, 950
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstMWI GCNNNNNNNGC 6 cut(s) 82, 111, 222, 755, 764, 962
BstNI CCWGG 2 cut(s) 211, 666
BstNSI RCATGY 3 cut(s) 859, 886, 1430
BstSCI CCNGG 5 cut(s) 209, 579, 640, 664, 859
BstV1I GCAGC 2 cut(s) 733, 779
BstV2I GAAGAC 2 cut(s) 447, 863
Bsu36I CCTNAGG 1 cut(s) 220
BsuRI GGCC 5 cut(s) 60, 315, 795, 1139, 1236
BtgI CCRYGG 2 cut(s) 153, 1237
BtsCI GGATG 4 cut(s) 134, 316, 559, 950
BtsIMutI CAGTG 7 cut(s) 27, 201, 323, 344, 687, 1485, 1526
Cac8I GCNNGC 2 cut(s) 58, 1428
CaiI CAGNNNCTG 2 cut(s) 56, 671
CciI TCATGA 2 cut(s) 472, 1111
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 59, 423
CsiI ACCWGGT 1 cut(s) 209
Csp6I GTAC 3 cut(s) 70, 364, 443
CspCI CAANNNNNGTGG 6 cut(s) 286, 321, 1021, 1056, 1293, 1328
CviQI GTAC 3 cut(s) 70, 364, 443
DdeI CTNAG 8 cut(s) 191, 220, 797, 875, 1060, 1149, 1154, 1518
DinI GGCGCC 1 cut(s) 86
DraIII CACNNNGTG 1 cut(s) 154
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
EaeI YGGCCR 2 cut(s) 313, 1234
Eam1104I CTCTTC 2 cut(s) 553, 599
EarI CTCTTC 2 cut(s) 553, 599
Eco130I CCWWGG 1 cut(s) 1237
Eco147I AGGCCT 1 cut(s) 795
Eco24I GRGCYC 2 cut(s) 760, 866
Eco47I GGWCC 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 1431
Eco81I CCTNAGG 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 423
EcoRI GAATTC 2 cut(s) 285, 1503
EcoRII CCWGG 2 cut(s) 209, 664
EcoT14I CCWWGG 1 cut(s) 1237
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 760, 866
EgeI GGCGCC 1 cut(s) 86
EheI GGCGCC 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 1237
FalI AAGNNNNNCTT 2 cut(s) 949, 981
FaqI GGGAC 2 cut(s) 256, 596
FauNDI CATATG 1 cut(s) 6
FbaI TGATCA 4 cut(s) 43, 618, 819, 912
Fnu4HI GCNGC 2 cut(s) 747, 768
FokI GGATG 4 cut(s) 121, 323, 566, 957
FriOI GRGCYC 2 cut(s) 760, 866
Fsp4HI GCNGC 2 cut(s) 747, 768
FspBI CTAG 3 cut(s) 654, 1044, 1509
GlaI GCGC 1 cut(s) 86
GluI GCNGC 2 cut(s) 747, 768
GsuI CTGGAG 3 cut(s) 774, 956, 960
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 5 cut(s) 60, 315, 795, 1139, 1236
HapII CCGG 3 cut(s) 580, 642, 860
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 85
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 4 cut(s) 131, 584, 783, 1014
HpaII CCGG 3 cut(s) 580, 642, 860
HphI GGTGA 5 cut(s) 533, 656, 829, 1253, 1414
Hpy166II GTNNAC 2 cut(s) 70, 1032
Hpy188I TCNGA 3 cut(s) 192, 337, 553
Hpy188III TCNNGA 7 cut(s) 232, 473, 622, 753, 787, 939, 1112
Hpy8I GTNNAC 2 cut(s) 70, 1032
HpyAV CCTTC 9 cut(s) 75, 414, 458, 506, 544, 548, 637, 1182, 1406
HpyCH4III ACNGT 2 cut(s) 31, 1489
HpyCH4V TGCA 8 cut(s) 4, 105, 490, 956, 1334, 1392, 1426, 1430
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 111, 222, 755, 764, 962
HpyF3I CTNAG 8 cut(s) 191, 220, 797, 875, 1060, 1149, 1154, 1518
Hsp92I GRCGYC 1 cut(s) 85
HspAI GCGC 1 cut(s) 85
KasI GGCGCC 1 cut(s) 84
Ksp22I TGATCA 4 cut(s) 43, 618, 819, 912
LmnI GCTCC 7 cut(s) 221, 387, 755, 806, 1164, 1447, 1468
Lsp1109I GCAGC 2 cut(s) 733, 779
LweI GCATC 1 cut(s) 92
MabI ACCWGGT 1 cut(s) 209
MaeI CTAG 3 cut(s) 654, 1044, 1509
MaeIII GTNAC 1 cut(s) 608
MboII GAAGA 7 cut(s) 294, 429, 447, 540, 586, 822, 863
MfeI CAATTG 1 cut(s) 377
MhlI GDGCHC 3 cut(s) 218, 760, 866
MlsI TGGCCA 2 cut(s) 315, 1236
MluNI TGGCCA 2 cut(s) 315, 1236
Mly113I GGCGCC 1 cut(s) 85
MlyI GAGTC 2 cut(s) 125, 578
Mox20I TGGCCA 2 cut(s) 315, 1236
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 964
MscI TGGCCA 2 cut(s) 315, 1236
MseI TTAA 2 cut(s) 1275, 1323
MslI CAYNNNNRTG 2 cut(s) 1361, 1490
Msp20I TGGCCA 2 cut(s) 315, 1236
MspI CCGG 3 cut(s) 580, 642, 860
MspR9I CCNGG 5 cut(s) 211, 581, 642, 666, 861
MunI CAATTG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 1121
MvaI CCWGG 2 cut(s) 211, 666
MwoI GCNNNNNNNGC 6 cut(s) 82, 111, 222, 755, 764, 962
NarI GGCGCC 1 cut(s) 85
NciI CCSGG 3 cut(s) 581, 642, 861
NcoI CCATGG 1 cut(s) 1237
NdeI CATATG 1 cut(s) 6
NlaIV GGNNCC 7 cut(s) 61, 86, 757, 925, 1160, 1443, 1532
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 859, 886, 1430
NspV TTCGAA 2 cut(s) 79, 714
OliI CACNNNNGTG 1 cut(s) 1490
PaeI GCATGC 1 cut(s) 1430
PagI TCATGA 2 cut(s) 472, 1111
PceI AGGCCT 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PctI GAATGC 1 cut(s) 1121
PdmI GAANNNNTTC 1 cut(s) 964
PfeI GAWTC 2 cut(s) 783, 1014
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 2 cut(s) 748, 769
PleI GAGTC 2 cut(s) 125, 578
PluTI GGCGCC 1 cut(s) 88
PpsI GAGTC 2 cut(s) 125, 578
PpuMI RGGWCCY 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 209, 664
PspGI CCWGG 2 cut(s) 209, 664
PspN4I GGNNCC 7 cut(s) 61, 86, 757, 925, 1160, 1443, 1532
PspPI GGNCC 2 cut(s) 59, 423
PspPPI RGGWCCY 1 cut(s) 423
PstNI CAGNNNCTG 2 cut(s) 56, 671
RsaI GTAC 3 cut(s) 71, 365, 444
RsaNI GTAC 3 cut(s) 70, 364, 443
RseI CAYNNNNRTG 2 cut(s) 1361, 1490
SaqAI TTAA 2 cut(s) 1275, 1323
SatI GCNGC 2 cut(s) 747, 768
Sau96I GGNCC 2 cut(s) 59, 423
SchI GAGTC 2 cut(s) 125, 578
ScrFI CCNGG 5 cut(s) 211, 581, 642, 666, 861
SduI GDGCHC 3 cut(s) 218, 760, 866
SexAI ACCWGGT 1 cut(s) 209
SfaNI GCATC 1 cut(s) 92
SfoI GGCGCC 1 cut(s) 86
SfuI TTCGAA 2 cut(s) 79, 714
SinI GGWCC 1 cut(s) 423
SmiMI CAYNNNNRTG 2 cut(s) 1361, 1490
SmlI CTYRAG 2 cut(s) 232, 1025
SmoI CTYRAG 2 cut(s) 232, 1025
SphI GCATGC 1 cut(s) 1430
SseBI AGGCCT 1 cut(s) 795
SspDI GGCGCC 1 cut(s) 84
SspMI CTAG 3 cut(s) 654, 1044, 1509
StuI AGGCCT 1 cut(s) 795
StyD4I CCNGG 5 cut(s) 209, 579, 640, 664, 859
StyI CCWWGG 1 cut(s) 1237
TaaI ACNGT 2 cut(s) 31, 1489
TaqI TCGA 5 cut(s) 79, 280, 289, 634, 714
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 2 cut(s) 783, 1014
Tru1I TTAA 2 cut(s) 1275, 1323
Tru9I TTAA 2 cut(s) 1275, 1323
TscAI CASTG 7 cut(s) 34, 208, 323, 351, 687, 1492, 1526
TseI GCWGC 2 cut(s) 746, 767
TspDTI ATGAA 5 cut(s) 450, 477, 556, 1128, 1379
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 7 cut(s) 34, 208, 323, 351, 687, 1492, 1526
Van91I CCANNNNNTGG 1 cut(s) 671
VpaK11BI GGWCC 1 cut(s) 423
XapI RAATTY 5 cut(s) 285, 437, 559, 1216, 1503
XceI RCATGY 3 cut(s) 859, 886, 1430
XmnI GAANNNNTTC 1 cut(s) 964
XspI CTAG 3 cut(s) 654, 1044, 1509
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.