Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000761

Physical Location & Seq

Genomic Coordinates Forward (+)

9918322 .. 9918800

Gene Structure 479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1071300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTATGGAGCGTCATCTTTCAGTAGCTCAAAAACTTCCCGTGCTACCAGTTTTAGTTCGCCATCTTTCACGAAACCTTCCCATACCAGTTACGAGCCAAGTGTTCCTCCTTATTATGGAAACAGTAGTTTTGTCGGTATAGCTCCACTTGCTCCTAGTTCTACCTATGATAATCAGGTTTGCCCCATTTGCCTTACAAATCCGAAAGACATGGCCTTTGGTTGCGGGCATCAGACATGTTGCGAATGCGGACAAGATCTTCAGTCGTGCCCAATTGCCGAAGTGCAATCCAAACCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009308 GO:0009690 GO:0009850 GO:0009987 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0034754 GO:0036211 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

101

Amino Acids

10.54

Weight (kDa)

6.0

Isoelectric Point (pI)

68.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	58 - 92	6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01650 AT3G01650 AT5G14420 AT5G14420 AT5G14420 AT5G14420
fragaria_vesca	FvH4_5g06620 FvH4_5g06621 FvH4_5g06621 FvH4_5g06630 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970
malus_domestica	MD06G1162400.v1.1 MD09G1021400.v1.1 MD10G1071300.v1.1 MD14G1168100.v1.1 MD14G1168200.v1.1 MD17G1021400.v1.1
prunus_persica	Prupe.3G295000_v2.0.a1 Prupe.5G163000_v2.0.a1 Prupe.5G163100_v2.0.a1 Prupe.5G163100_v2.0.a1
pyrus_communis	pycom06g14510 pycom111g01780 pycom14g14020 pycom17g01850
rosa_chinensis	RchiOBHm_Chr2g0173441 RchiOBHm_Chr7g0192061 RchiOBHm_Chr7g0192071 RchiOBHm_Chr7g0192081
rosa_laevigata	RLG00000004403 RLG00000004404 RLG00000022190
rosa_multiflora	Rmu_sc0015463.1_g000001 Rmu_sc0019120.1_g000001 Rmu_ssc0000421.1_g000038 Rmu_ssc0000421.1_g000042 Rmu_ssc0000421.1_g000043
rosa_roxburghii	Rroxscaffold_2G00078850 Rroxscaffold_3G00263310 Rroxscaffold_3G00263320
rosa_rugosa	Rorug02G0570400 Rorug02G0570400 Rorug02G0570400 Rorug02G0570500 Rorug02G0570600 Rorug06G0512900 Rorug06G0513000 Rorug06G0513000 Rorug06G0513100 Rorug06G0513200
rosa_samantha	Rh2AG648900 Rh2BG659500 Rh2CG624800 Rh2DG674700 Rh7AG123300 Rh7BG124800 Rh7BG125000 Rh7CG127600 Rh7DG126600
rosa_wichuraiana	Rw0G003640 Rw0G003650 Rw2G053270 Rw7G010490 Rw7G010500 Rw7G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	225, 249
AcuI	CTGAAG	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	27, 143
AluI	AGCT	2 cut(s)	27, 143
AoxI	GGCC	1 cut(s)	213
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
BaeGI	GKGCMC	1 cut(s)	272
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	297
BfaI	CTAG	1 cut(s)	156
BglII	AGATCT	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	48, 87
BseBI	CCWGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	48, 87
BseSI	GKGCMC	1 cut(s)	272
BshFI	GGCC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	2 cut(s)	225, 249
BspANI	GGCC	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	48, 87
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 189
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	295
BstSLI	GKGCMC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	227
CviAII	CATG	2 cut(s)	211, 237
CviJI	RGCY	4 cut(s)	27, 97, 143, 215
CviKI_1	RGCY	4 cut(s)	27, 97, 143, 215
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	214, 240
FaiI	YATR	7 cut(s)	6, 84, 117, 140, 168, 212, 238
FatI	CATG	2 cut(s)	210, 236
FauI	CCCGC	1 cut(s)	218
FspBI	CTAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	214, 240
Hpy188I	TCNGA	2 cut(s)	204, 234
Hpy188III	TCNNGA	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 189
Hsp92II	CATG	2 cut(s)	214, 240
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	3 cut(s)	8, 148, 157
LpnPI	CCDG	4 cut(s)	61, 100, 161, 282
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	1 cut(s)	251
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	1 cut(s)	273
MnlI	CCTC	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	149, 189
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	214, 240
NspI	RCATGY	1 cut(s)	240
PciI	ACATGT	1 cut(s)	236
PctI	GAATGC	1 cut(s)	251
PscI	ACATGT	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	256
Sau3AI	GATC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	6 cut(s)	29, 79, 145, 167, 180, 298
SfaNI	GCATC	1 cut(s)	238
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	2 cut(s)	225, 249
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	1 cut(s)	273
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.