Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000761

Physical Location & Seq

Genomic Coordinates Reverse (-)

16807614 .. 16808938

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGCATCACTATTGTTGAGCAAAGTGGCGGTCAGTACCATGTGTTGGTGATAATAGCTGATGGGCAGGTGACCAGAAGTGTTGATACCGGGCATGGCCAGTTAAGCCCGCAGGAAAGGAAAACTGTTGAAGCAATTGTTAAAGCGAGCGACTATCCCTTATCAATTATACTAGTTGGTGTCGGAGATGGACCATGGGATATGATGAAAGAATTTGATGATAACATCCCTGCTCGGGCCTTCGATAACTTTCAGTTTGTGAATTTTACGGAAATTATGGCAAAGAATATTGACCGTTCGAGAAAAGAAGCAGAATTTGCTCTTGCAGCACTGATGGAAATACCTTCACAGTATAAAGCAACACTAGAACTTAATATATTAGGTGCCACAAGAGGGAAGGCTATAGATAGGGTACCTCTGCCCCCACCTCATTATGGTTCATCTTCTTTTAGCTCCCCCAAAACTTCGCGATCAAGTAGTTTTCGTCCAAGTGCACCTTCTAGGCAACGTGATGAGTTTGTTAGCACAGCACATCCTGCCGGTTCAACTTCTGACAATCATGTCTGTCCCATTTGCCTAACCGATCCGAAGAATATGGCATTTGGTTGTGGACATCAGACATGCTGTGACTGTGGAGAAGATCTTGACTTATGTCCCATATGCAGAACCAGCATAATCACCCGAATAAAGCTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

233

Amino Acids

25.37

Weight (kDa)

5.86

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01650 AT3G01650 AT5G14420 AT5G14420 AT5G14420 AT5G14420
fragaria_vesca	FvH4_5g06620 FvH4_5g06621 FvH4_5g06621 FvH4_5g06630 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970
malus_domestica	MD06G1162400.v1.1 MD09G1021400.v1.1 MD10G1071300.v1.1 MD14G1168100.v1.1 MD14G1168200.v1.1 MD17G1021400.v1.1
prunus_persica	Prupe.3G295000_v2.0.a1 Prupe.5G163000_v2.0.a1 Prupe.5G163100_v2.0.a1 Prupe.5G163100_v2.0.a1
pyrus_communis	pycom06g14510 pycom111g01780 pycom14g14020 pycom17g01850
rosa_chinensis	RchiOBHm_Chr2g0173441 RchiOBHm_Chr7g0192061 RchiOBHm_Chr7g0192071 RchiOBHm_Chr7g0192081
rosa_laevigata	RLG00000004403 RLG00000004404 RLG00000022190
rosa_multiflora	Rmu_sc0015463.1_g000001 Rmu_sc0019120.1_g000001 Rmu_ssc0000421.1_g000038 Rmu_ssc0000421.1_g000042 Rmu_ssc0000421.1_g000043
rosa_roxburghii	Rroxscaffold_2G00078850 Rroxscaffold_3G00263310 Rroxscaffold_3G00263320
rosa_rugosa	Rorug02G0570400 Rorug02G0570400 Rorug02G0570400 Rorug02G0570500 Rorug02G0570600 Rorug06G0512900 Rorug06G0513000 Rorug06G0513000 Rorug06G0513100 Rorug06G0513200
rosa_samantha	Rh2AG648900 Rh2BG659500 Rh2CG624800 Rh2DG674700 Rh7AG123300 Rh7BG124800 Rh7BG125000 Rh7CG127600 Rh7DG126600
rosa_wichuraiana	Rw0G003640 Rw0G003650 Rw2G053270 Rw7G010490 Rw7G010500 Rw7G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	58
AasI	GACNNNNNNGTC	1 cut(s)	560
Acc36I	ACCTGC	1 cut(s)	58
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	2 cut(s)	383, 412
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccII	CGCG	1 cut(s)	469
AciI	CCGC	2 cut(s)	30, 110
AclWI	GGATC	1 cut(s)	578
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	3 cut(s)	212, 262, 314
AfaI	GTAC	2 cut(s)	38, 414
AfiI	CCNNNNNNNGG	4 cut(s)	46, 235, 393, 434
AgsI	TTSAA	2 cut(s)	131, 546
AhlI	ACTAGT	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	481, 513
AluBI	AGCT	3 cut(s)	59, 453, 691
AluI	AGCT	3 cut(s)	59, 453, 691
Alw21I	GWGCWC	1 cut(s)	496
Alw44I	GTGCAC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	2 cut(s)	97, 237
ApaLI	GTGCAC	1 cut(s)	492
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	3 cut(s)	212, 262, 314
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
Asp718I	GGTACC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	191, 237
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	3 cut(s)	61, 82, 670
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	496
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	2 cut(s)	383, 412
BarI	GAAGNNNNNNTAC	2 cut(s)	70, 102
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	3 cut(s)	56, 182, 328
BcnI	CCSGG	1 cut(s)	91
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	3 cut(s)	173, 365, 501
BfmI	CTRYAG	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	58
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	191, 237
BmiI	GGNNCC	2 cut(s)	385, 414
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	15
BoxI	GACNNNNGTC	1 cut(s)	651
BpuMI	CCSGG	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 235, 393, 434
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	2 cut(s)	225, 532
BseLI	CCNNNNNNNGG	4 cut(s)	46, 235, 393, 434
BseNI	ACTGG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	2 cut(s)	99, 239
BshNI	GGYRCC	2 cut(s)	383, 412
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	90, 540
BslFI	GGGAC	2 cut(s)	552, 639
BslI	CCNNNNNNNGG	4 cut(s)	46, 235, 393, 434
BsmFI	GGGAC	2 cut(s)	552, 639
BsnI	GGCC	2 cut(s)	99, 239
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	470, 583, 640
Bsp19I	CCATGG	1 cut(s)	194
Bsp68I	TCGCGA	1 cut(s)	469
BspACI	CCGC	2 cut(s)	30, 110
BspANI	GGCC	2 cut(s)	99, 239
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	385, 414
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	578
BspT107I	GGYRCC	2 cut(s)	383, 412
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	3 cut(s)	470, 583, 640
BssT1I	CCWWGG	1 cut(s)	194
Bst4CI	ACNGT	4 cut(s)	127, 296, 351, 632
BstAPI	GCANNNNNTGC	2 cut(s)	317, 536
BstC8I	GCNNGC	2 cut(s)	110, 148
BstDSI	CCRYGG	1 cut(s)	194
BstEII	GGTNACC	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	225, 532
BstFNI	CGCG	1 cut(s)	469
BstKTI	GATC	3 cut(s)	473, 586, 643
BstMBI	GATC	3 cut(s)	470, 583, 640
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 317, 326, 536, 669
BstNSI	RCATGY	1 cut(s)	624
BstPAI	GACNNNNGTC	1 cut(s)	651
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	496
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	99, 239
BtgI	CCRYGG	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	225, 532
BtsIMutI	CAGTG	1 cut(s)	329
BtuMI	TCGCGA	1 cut(s)	469
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	110, 148
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	191, 237
Csp6I	GTAC	2 cut(s)	37, 413
CviAII	CATG	5 cut(s)	41, 95, 195, 560, 621
CviJI	RGCY	7 cut(s)	59, 99, 108, 239, 401, 453, 691
CviKI_1	RGCY	7 cut(s)	59, 99, 108, 239, 401, 453, 691
CviQI	GTAC	2 cut(s)	37, 413
DpnI	GATC	3 cut(s)	472, 585, 642
DpnII	GATC	3 cut(s)	470, 583, 640
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	194
FaeI	CATG	5 cut(s)	44, 98, 198, 563, 624
FalI	AAGNNNNNCTT	2 cut(s)	481, 513
FaqI	GGGAC	2 cut(s)	552, 639
FatI	CATG	5 cut(s)	40, 94, 194, 559, 620
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	659
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	212, 519
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	3 cut(s)	173, 365, 501
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	99, 239
HapII	CCGG	2 cut(s)	90, 540
Hin1II	CATG	5 cut(s)	44, 98, 198, 563, 624
HpaII	CCGG	2 cut(s)	90, 540
HphI	GGTGA	3 cut(s)	61, 82, 670
Hpy166II	GTNNAC	2 cut(s)	494, 611
Hpy188I	TCNGA	4 cut(s)	185, 553, 588, 618
Hpy188III	TCNNGA	3 cut(s)	300, 468, 644
Hpy8I	GTNNAC	2 cut(s)	494, 611
HpyAV	CCTTC	4 cut(s)	250, 354, 391, 507
HpyCH4III	ACNGT	4 cut(s)	127, 296, 351, 632
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	326, 494, 663
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 317, 326, 536, 669
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	5 cut(s)	44, 98, 198, 563, 624
KpnI	GGTACC	1 cut(s)	416
Kzo9I	GATC	3 cut(s)	470, 583, 640
LmnI	GCTCC	1 cut(s)	458
LpnPI	CCDG	9 cut(s)	53, 88, 98, 103, 113, 243, 549, 553, 682
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	3 cut(s)	173, 365, 501
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	2 cut(s)	70, 626
MalI	GATC	3 cut(s)	472, 585, 642
MboI	GATC	3 cut(s)	470, 583, 640
MboII	GAAGA	3 cut(s)	435, 601, 650
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	496
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	6 cut(s)	135, 165, 212, 262, 273, 314
MluNI	TGGCCA	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	3 cut(s)	386, 426, 438
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	4 cut(s)	104, 141, 372, 697
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	2 cut(s)	90, 540
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	5 cut(s)	105, 317, 326, 536, 669
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	194
NdeI	CATATG	1 cut(s)	659
NdeII	GATC	3 cut(s)	470, 583, 640
NlaIII	CATG	5 cut(s)	44, 98, 198, 563, 624
NlaIV	GGNNCC	2 cut(s)	385, 414
NmuCI	GTSAC	2 cut(s)	70, 626
NruI	TCGCGA	1 cut(s)	469
NspI	RCATGY	1 cut(s)	624
PaqCI	CACCTGC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	328
PshAI	GACNNNNGTC	1 cut(s)	651
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	385, 414
PspPI	GGNCC	2 cut(s)	191, 237
PsuI	RGATCY	1 cut(s)	640
RruI	TCGCGA	1 cut(s)	469
RsaI	GTAC	2 cut(s)	38, 414
RsaNI	GTAC	2 cut(s)	37, 413
SaqAI	TTAA	4 cut(s)	104, 141, 372, 697
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	3 cut(s)	470, 583, 640
Sau96I	GGNCC	2 cut(s)	191, 237
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	15
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	172
Sse9I	AATT	6 cut(s)	135, 165, 212, 262, 273, 314
SsiI	CCGC	2 cut(s)	30, 110
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	3 cut(s)	173, 365, 501
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	194
TaaI	ACNGT	4 cut(s)	127, 296, 351, 632
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	243, 299
TasI	AATT	6 cut(s)	135, 165, 212, 262, 273, 314
Tru1I	TTAA	4 cut(s)	104, 141, 372, 697
Tru9I	TTAA	4 cut(s)	104, 141, 372, 697
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	70, 626
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	2 cut(s)	70, 626
TspDTI	ATGAA	2 cut(s)	221, 429
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	336
Van91I	CCANNNNNTGG	1 cut(s)	46
VneI	GTGCAC	1 cut(s)	492
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	3 cut(s)	212, 262, 314
XceI	RCATGY	1 cut(s)	624
XspI	CTAG	3 cut(s)	173, 365, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.