Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000761

Physical Location & Seq

Genomic Coordinates Forward (+)

79912081 .. 79917154

Gene Structure 5074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG624800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTGGCAGGAGTTCAAAAGAGGATAGGAGTTTGAGGCAGAATAGTTATGGGTCCAGGTCGTCGTCTTCTTCTTGGAGTGGATATCCTCCAGTTCAATCACCATATGTAGAAAGTCAGGGGTATGCACCTCAGCAATCCTATCCTCCATCACAGTATTCATATCCGCCGCCGCCGCAGGATTATGGTCAAGAAACTCAGGCTTATTATCCACCCCAGCAGCCATCCTATCCATCATCATCACAGTATTCCAATCCCCCGCAGCCGCCGCCACCGGATTATGGGGGGCAAAGGAAGCTGGACAGGAGATATTCGAGAATTGCTGACAGTTACAATTCCCTCGAGGAGGTGACTGAGGCTCTTGCACGTGCTGGACTTGAGTCTTCGAATCTAATAGTCGGTATTGATTTCACAAAGAGCAATGAGTGGACAGGCAAGAACTCGTATAACAGAAGAAGCTTGCATCACATTGGGGATGGTCTAAATCCCTATGAACATGCAATTACCATTATTGGAAAAACCTTGGCTGCTTTTGATGAGGATAACATGATTCCGTGTTATGGTTTTGGAGATGCAACAACCCATGATCAAGATGTTTTTAGTTTCTACCCAAACGATCAACATTGCAATGGGTTTGAGGAAGTATTGACTCGCTACAAGGAAATTGTTCCTCATCTTCGCCTTGCAGGACCGACTTCATTTGCACCTGTAATTGAAATGGCCATGACTATTGTTGAGCAGAGTGGTGGCCAATACCATGTCCTATTGATAATTGCAGATGGCCAGGTAACTAGAAGTGTTGATACTGAGCGTGGCAGGCTAAGTCCACAGGAACAGAAGACAGTTGATGCAATTGTTGAAGCAAGCAAGTTCCCTCTATCAATTATATTGGTTGGTGTTGGAGATGGACCCTGGGACATGATGAAAGAGTTTGATGACAACATTCCTGCTCGGGCCTTTGATAATTTCCAATTTGTGAACTTTACGGAAATTATGTCAAAGAAATTGTCATCTTTGCGAAAGGAGACTGAATTTGCTCTAGCAGCATTGATGGAAATTCCGACTCAGTATAAAGCAACGATAGAGCTTAATCTCTTGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009308 GO:0009690 GO:0009850 GO:0009987 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0034754 GO:0036211 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

367

Amino Acids

41.03

Weight (kDa)

4.98

Isoelectric Point (pI)

61.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	153 - 366	2.5e-74	Copine

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01650 AT3G01650 AT5G14420 AT5G14420 AT5G14420 AT5G14420
fragaria_vesca	FvH4_5g06620 FvH4_5g06621 FvH4_5g06621 FvH4_5g06630 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970
malus_domestica	MD06G1162400.v1.1 MD09G1021400.v1.1 MD10G1071300.v1.1 MD14G1168100.v1.1 MD14G1168200.v1.1 MD17G1021400.v1.1
prunus_persica	Prupe.3G295000_v2.0.a1 Prupe.5G163000_v2.0.a1 Prupe.5G163100_v2.0.a1 Prupe.5G163100_v2.0.a1
pyrus_communis	pycom06g14510 pycom111g01780 pycom14g14020 pycom17g01850
rosa_chinensis	RchiOBHm_Chr2g0173441 RchiOBHm_Chr7g0192061 RchiOBHm_Chr7g0192071 RchiOBHm_Chr7g0192081
rosa_laevigata	RLG00000004403 RLG00000004404 RLG00000022190
rosa_multiflora	Rmu_sc0015463.1_g000001 Rmu_sc0019120.1_g000001 Rmu_ssc0000421.1_g000038 Rmu_ssc0000421.1_g000042 Rmu_ssc0000421.1_g000043
rosa_roxburghii	Rroxscaffold_2G00078850 Rroxscaffold_3G00263310 Rroxscaffold_3G00263320
rosa_rugosa	Rorug02G0570400 Rorug02G0570400 Rorug02G0570400 Rorug02G0570500 Rorug02G0570600 Rorug06G0512900 Rorug06G0513000 Rorug06G0513000 Rorug06G0513100 Rorug06G0513200
rosa_samantha	Rh2AG648900 Rh2BG659500 Rh2CG624800 Rh2DG674700 Rh7AG123300 Rh7BG124800 Rh7BG125000 Rh7CG127600 Rh7DG126600
rosa_wichuraiana	Rw0G003640 Rw0G003650 Rw2G053270 Rw7G010490 Rw7G010500 Rw7G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	341
AciI	CCGC	7 cut(s)	167, 170, 173, 176, 260, 266, 269
AcoI	YGGCCR	3 cut(s)	720, 748, 781
AcsI	RAATTY	2 cut(s)	1031, 1056
AcvI	CACGTG	1 cut(s)	368
AfiI	CCNNNNNNNGG	3 cut(s)	281, 346, 560
AgsI	TTSAA	4 cut(s)	18, 98, 716, 860
AjnI	CCWGG	3 cut(s)	56, 783, 911
AluBI	AGCT	3 cut(s)	298, 459, 1087
AluI	AGCT	3 cut(s)	298, 459, 1087
Alw26I	GTCTC	1 cut(s)	1019
Ama87I	CYCGRG	2 cut(s)	341, 951
AoxI	GGCC	4 cut(s)	720, 748, 781, 954
ApeKI	GCWGC	4 cut(s)	220, 262, 527, 1043
ApoI	RAATTY	2 cut(s)	1031, 1056
ArsI	GACNNNNNNTTYG	2 cut(s)	992, 1024
Asp700I	GAANNNNTTC	1 cut(s)	666
AspS9I	GGNCC	4 cut(s)	54, 689, 908, 954
AsuHPI	GGTGA	2 cut(s)	93, 361
AsuII	TTCGAA	1 cut(s)	386
AvaI	CYCGRG	2 cut(s)	341, 951
AvaII	GGWCC	3 cut(s)	54, 689, 908
BalI	TGGCCA	3 cut(s)	722, 750, 783
BarI	GAAGNNNNNNTAC	2 cut(s)	787, 819
BbrPI	CACGTG	1 cut(s)	368
BbsI	GAAGAC	3 cut(s)	60, 375, 845
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	4 cut(s)	232, 274, 514, 1055
BccI	CCATC	7 cut(s)	157, 232, 241, 470, 773, 899, 1045
BciT130I	CCWGG	3 cut(s)	58, 785, 913
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	1019
BfaI	CTAG	2 cut(s)	792, 1040
BisI	GCNGC	9 cut(s)	170, 173, 176, 221, 263, 266, 269, 528, 1044
BlsI	GCNGC	9 cut(s)	171, 174, 177, 222, 264, 267, 270, 529, 1045
Bme1390I	CCNGG	3 cut(s)	58, 785, 913
Bme18I	GGWCC	3 cut(s)	54, 689, 908
BmeT110I	CYCGRG	2 cut(s)	341, 951
BmgT120I	GGNCC	4 cut(s)	54, 689, 908, 954
BmiI	GGNNCC	2 cut(s)	55, 910
BmrFI	CCNGG	3 cut(s)	58, 785, 913
BmsI	GCATC	3 cut(s)	472, 562, 838
BoxI	GACNNNNGTC	1 cut(s)	379
BpiI	GAAGAC	3 cut(s)	60, 375, 845
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	398
BsaAI	YACGTR	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	522, 911, 912
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 346, 560
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	3 cut(s)	427, 622, 634
BseBI	CCWGG	3 cut(s)	58, 785, 913
BseDI	CCNNGG	3 cut(s)	522, 911, 912
BseGI	GGATG	2 cut(s)	224, 481
BseLI	CCNNNNNNNGG	3 cut(s)	281, 346, 560
BseMI	GCAATG	3 cut(s)	427, 622, 634
BseMII	CTCAG	5 cut(s)	146, 212, 345, 798, 1079
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	4 cut(s)	232, 274, 514, 1055
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	4 cut(s)	722, 750, 783, 956
BsiHKCI	CYCGRG	2 cut(s)	341, 951
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	929
BslI	CCNNNNNNNGG	3 cut(s)	281, 346, 560
BsmAI	GTCTC	1 cut(s)	1019
BsmFI	GGGAC	1 cut(s)	929
BsnI	GGCC	4 cut(s)	722, 750, 783, 956
BsoBI	CYCGRG	2 cut(s)	341, 951
Bsp119I	TTCGAA	1 cut(s)	386
Bsp143I	GATC	2 cut(s)	586, 616
BspACI	CCGC	7 cut(s)	167, 170, 173, 176, 260, 266, 269
BspANI	GGCC	4 cut(s)	722, 750, 783, 956
BspCNI	CTCAG	5 cut(s)	145, 211, 346, 799, 1078
BspLI	GGNNCC	2 cut(s)	55, 910
BspT104I	TTCGAA	1 cut(s)	386
BsrDI	GCAATG	3 cut(s)	427, 622, 634
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	522, 911, 912
BssMI	GATC	2 cut(s)	586, 616
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	3 cut(s)	58, 785, 913
Bst4CI	ACNGT	4 cut(s)	156, 246, 329, 844
BstBAI	YACGTR	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	461, 818, 865
BstDEI	CTNAG	6 cut(s)	132, 198, 354, 807, 821, 1065
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	224, 481
BstKTI	GATC	2 cut(s)	589, 619
BstMAI	GTCTC	1 cut(s)	1019
BstMBI	GATC	2 cut(s)	586, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 268, 295, 817, 1043
BstNI	CCWGG	3 cut(s)	58, 785, 913
BstNSI	RCATGY	1 cut(s)	500
BstPAI	GACNNNNGTC	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	56, 783, 911
BstV1I	GCAGC	4 cut(s)	232, 274, 514, 1055
BstV2I	GAAGAC	3 cut(s)	60, 375, 845
BsuRI	GGCC	4 cut(s)	722, 750, 783, 956
BtsCI	GGATG	2 cut(s)	224, 481
Cac8I	GCNNGC	3 cut(s)	461, 818, 865
Cfr13I	GGNCC	4 cut(s)	54, 689, 908, 954
CviAII	CATG	6 cut(s)	497, 547, 584, 724, 758, 919
DdeI	CTNAG	6 cut(s)	132, 198, 354, 807, 821, 1065
DpnI	GATC	2 cut(s)	588, 618
DpnII	GATC	2 cut(s)	586, 616
EaeI	YGGCCR	3 cut(s)	720, 748, 781
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	522
Eco32I	GATATC	1 cut(s)	86
Eco47I	GGWCC	3 cut(s)	54, 689, 908
Eco72I	CACGTG	1 cut(s)	368
Eco88I	CYCGRG	2 cut(s)	341, 951
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoRII	CCWGG	3 cut(s)	56, 783, 911
EcoRV	GATATC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	6 cut(s)	500, 550, 587, 727, 761, 922
FaqI	GGGAC	1 cut(s)	929
FatI	CATG	6 cut(s)	496, 546, 583, 723, 757, 918
FauI	CCCGC	1 cut(s)	267
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	9 cut(s)	170, 173, 176, 221, 263, 266, 269, 528, 1044
FokI	GGATG	2 cut(s)	211, 488
Fsp4HI	GCNGC	9 cut(s)	170, 173, 176, 221, 263, 266, 269, 528, 1044
FspBI	CTAG	2 cut(s)	792, 1040
GluI	GCNGC	9 cut(s)	170, 173, 176, 221, 263, 266, 269, 528, 1044
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	722, 750, 783, 956
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	6 cut(s)	500, 550, 587, 727, 761, 922
HindIII	AAGCTT	1 cut(s)	457
HinfI	GANTC	5 cut(s)	380, 388, 550, 649, 1063
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	2 cut(s)	93, 361
Hpy166II	GTNNAC	3 cut(s)	429, 827, 979
Hpy188I	TCNGA	1 cut(s)	1062
Hpy188III	TCNNGA	3 cut(s)	191, 315, 590
Hpy8I	GTNNAC	3 cut(s)	429, 827, 979
Hpy99I	CGWCG	1 cut(s)	67
HpyCH4III	ACNGT	4 cut(s)	156, 246, 329, 844
HpyCH4IV	ACGT	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 268, 295, 817, 1043
HpyF3I	CTNAG	6 cut(s)	132, 198, 354, 807, 821, 1065
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	6 cut(s)	500, 550, 587, 727, 761, 922
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	586, 616
Lsp1109I	GCAGC	4 cut(s)	232, 274, 514, 1055
LweI	GCATC	3 cut(s)	472, 562, 838
MaeI	CTAG	2 cut(s)	792, 1040
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	3 cut(s)	329, 349, 787
MalI	GATC	2 cut(s)	588, 618
MboI	GATC	2 cut(s)	586, 616
MboII	GAAGA	6 cut(s)	60, 63, 375, 465, 668, 850
MfeI	CAATTG	1 cut(s)	852
MlsI	TGGCCA	3 cut(s)	722, 750, 783
MluNI	TGGCCA	3 cut(s)	722, 750, 783
MlyI	GAGTC	3 cut(s)	389, 643, 1057
MmeI	TCCRAC	2 cut(s)	880, 1085
Mox20I	TGGCCA	3 cut(s)	722, 750, 783
MroXI	GAANNNNTTC	1 cut(s)	666
MscI	TGGCCA	3 cut(s)	722, 750, 783
MseI	TTAA	1 cut(s)	1089
MslI	CAYNNNNRTG	1 cut(s)	627
Msp20I	TGGCCA	3 cut(s)	722, 750, 783
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	3 cut(s)	58, 785, 913
MunI	CAATTG	1 cut(s)	852
MvaI	CCWGG	3 cut(s)	58, 785, 913
MwoI	GCNNNNNNNGC	5 cut(s)	175, 268, 295, 817, 1043
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	2 cut(s)	586, 616
NlaIII	CATG	6 cut(s)	500, 550, 587, 727, 761, 922
NlaIV	GGNNCC	2 cut(s)	55, 910
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	341
PasI	CCCWGGG	1 cut(s)	912
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	388, 550
PkrI	GCNGC	9 cut(s)	171, 174, 177, 222, 264, 267, 270, 529, 1045
PleI	GAGTC	3 cut(s)	388, 643, 1057
PmaCI	CACGTG	1 cut(s)	368
PmlI	CACGTG	1 cut(s)	368
PpsI	GAGTC	3 cut(s)	388, 643, 1057
Ppu21I	YACGTR	1 cut(s)	368
PshAI	GACNNNNGTC	1 cut(s)	379
Psp6I	CCWGG	3 cut(s)	56, 783, 911
PspCI	CACGTG	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	3 cut(s)	56, 783, 911
PspN4I	GGNNCC	2 cut(s)	55, 910
PspPI	GGNCC	4 cut(s)	54, 689, 908, 954
PspXI	VCTCGAGB	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	1089
SatI	GCNGC	9 cut(s)	170, 173, 176, 221, 263, 266, 269, 528, 1044
Sau3AI	GATC	2 cut(s)	586, 616
Sau96I	GGNCC	4 cut(s)	54, 689, 908, 954
SchI	GAGTC	3 cut(s)	389, 643, 1057
ScrFI	CCNGG	3 cut(s)	58, 785, 913
SfaNI	GCATC	3 cut(s)	472, 562, 838
Sfr274I	CTCGAG	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	3 cut(s)	54, 689, 908
SlaI	CTCGAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	341, 377
SmoI	CTYRAG	2 cut(s)	341, 377
SsiI	CCGC	7 cut(s)	167, 170, 173, 176, 260, 266, 269
SspMI	CTAG	2 cut(s)	792, 1040
StyD4I	CCNGG	3 cut(s)	56, 783, 911
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	156, 246, 329, 844
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	3 cut(s)	314, 342, 386
TaqII	GACCGA	1 cut(s)	706
TauI	GCSGC	5 cut(s)	172, 175, 178, 268, 271
TfiI	GAWTC	2 cut(s)	388, 550
Tru1I	TTAA	1 cut(s)	1089
Tru9I	TTAA	1 cut(s)	1089
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	4 cut(s)	220, 262, 527, 1043
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	150, 507, 687, 938
TspGWI	ACGGA	2 cut(s)	543, 1001
VpaK11BI	GGWCC	3 cut(s)	54, 689, 908
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	2 cut(s)	1031, 1056
XceI	RCATGY	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	2 cut(s)	792, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.