Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000761

Physical Location & Seq

Genomic Coordinates Reverse (-)

62774691 .. 62775844

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0512900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCCCTAGCCTCCATGGGGAACAAAGCCTCCAAGAATTCCGACAAGATCGGAGAGACTGAGAAAAAAGAGATTCTTGAAGTGGTTGTGGCCATTGGGGATGATAATGGTTTGATCTTGGAAAAGGAGAGCATGAGTTTTGAGTTGGTGACTGGTGGATTGGAAGATGGCTGGTCGCCGGATTGCTATGTGGTTCGGATTTCGGATTTGGAGGCGTCTCCAGTGGATGCAGCGGCTTTGTCGCTGGAGGGGGGTTTCGATAAGTTTAGTATTGACAGTGAGAAAGAATTGGTTAGGGGGAAGAGGATTAAGGGAAGTTCAGGGAGGGATTGTTGGTGGAAGCAGGACAATGGTGGAGGAGGAGGGTCTGAGTTTGGGAGGAAGGAGGAGTTCTGTGAAGAGCTTAGTAAGAAAAGGAAGAAGAAGAAGAAGAAGAGAGGTTTCGATTCGGGTTGTGATGGCAGAAGGATGAGGAGGATTGGGGGTCGGAAAGGAAGAAGAGGAAGAACACAAAGAAGCAAAGTCAGATGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

179

Amino Acids

19.95

Weight (kDa)

9.61

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01650 AT3G01650 AT5G14420 AT5G14420 AT5G14420 AT5G14420
fragaria_vesca	FvH4_5g06620 FvH4_5g06621 FvH4_5g06621 FvH4_5g06630 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970
malus_domestica	MD06G1162400.v1.1 MD09G1021400.v1.1 MD10G1071300.v1.1 MD14G1168100.v1.1 MD14G1168200.v1.1 MD17G1021400.v1.1
prunus_persica	Prupe.3G295000_v2.0.a1 Prupe.5G163000_v2.0.a1 Prupe.5G163100_v2.0.a1 Prupe.5G163100_v2.0.a1
pyrus_communis	pycom06g14510 pycom111g01780 pycom14g14020 pycom17g01850
rosa_chinensis	RchiOBHm_Chr2g0173441 RchiOBHm_Chr7g0192061 RchiOBHm_Chr7g0192071 RchiOBHm_Chr7g0192081
rosa_laevigata	RLG00000004403 RLG00000004404 RLG00000022190
rosa_multiflora	Rmu_sc0015463.1_g000001 Rmu_sc0019120.1_g000001 Rmu_ssc0000421.1_g000038 Rmu_ssc0000421.1_g000042 Rmu_ssc0000421.1_g000043
rosa_roxburghii	Rroxscaffold_2G00078850 Rroxscaffold_3G00263310 Rroxscaffold_3G00263320
rosa_rugosa	Rorug02G0570400 Rorug02G0570400 Rorug02G0570400 Rorug02G0570500 Rorug02G0570600 Rorug06G0512900 Rorug06G0513000 Rorug06G0513000 Rorug06G0513100 Rorug06G0513200
rosa_samantha	Rh2AG648900 Rh2BG659500 Rh2CG624800 Rh2DG674700 Rh7AG123300 Rh7BG124800 Rh7BG125000 Rh7CG127600 Rh7DG126600
rosa_wichuraiana	Rw0G003640 Rw0G003650 Rw2G053270 Rw7G010490 Rw7G010500 Rw7G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	80
AloI	GAACNNNNNNTCC	2 cut(s)	14, 46
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw26I	GTCTC	2 cut(s)	50, 222
AoxI	GGCC	2 cut(s)	3, 90
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	3 cut(s)	161, 452, 522
BcoDI	GTCTC	2 cut(s)	50, 222
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	2 cut(s)	231, 234
BlsI	GCNGC	2 cut(s)	232, 235
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	2 cut(s)	204, 266
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse1I	ACTGG	2 cut(s)	157, 221
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	3 cut(s)	106, 232, 474
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	51, 360
BseNI	ACTGG	2 cut(s)	157, 221
BseRI	GAGGAG	4 cut(s)	372, 375, 401, 487
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	2 cut(s)	5, 92
BsiSI	CCGG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	50, 222
BsmBI	CGTCTC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	5, 92
Bsp143I	GATC	2 cut(s)	48, 114
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	2 cut(s)	5, 92
BspCNI	CTCAG	2 cut(s)	52, 361
BspQI	GCTCTTC	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	157, 221
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	48, 114
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	4 cut(s)	296, 393, 428, 493
BstACI	GRCGYC	1 cut(s)	215
BstDEI	CTNAG	3 cut(s)	60, 369, 404
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	106, 232, 474
BstKTI	GATC	2 cut(s)	51, 117
BstMAI	GTCTC	2 cut(s)	50, 222
BstMBI	GATC	2 cut(s)	48, 114
BstV1I	GCAGC	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	5, 92
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	106, 232, 474
BtsIMutI	CAGTG	2 cut(s)	228, 283
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	204
CviAII	CATG	2 cut(s)	16, 133
CviJI	RGCY	7 cut(s)	5, 11, 29, 92, 171, 236, 403
CviKI_1	RGCY	7 cut(s)	5, 11, 29, 92, 171, 236, 403
DdeI	CTNAG	3 cut(s)	60, 369, 404
DpnI	GATC	2 cut(s)	50, 116
DpnII	GATC	2 cut(s)	48, 114
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	4 cut(s)	296, 393, 428, 493
EarI	CTCTTC	4 cut(s)	296, 393, 428, 493
Eco130I	CCWWGG	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	2 cut(s)	19, 136
FaiI	YATR	3 cut(s)	17, 134, 189
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	2 cut(s)	15, 132
Fnu4HI	GCNGC	2 cut(s)	231, 234
FokI	GGATG	3 cut(s)	113, 239, 481
Fsp4HI	GCNGC	2 cut(s)	231, 234
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	2 cut(s)	231, 234
GsuI	CTGGAG	2 cut(s)	204, 266
HaeIII	GGCC	2 cut(s)	5, 92
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	19, 136
HinfI	GANTC	2 cut(s)	73, 446
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	7 cut(s)	43, 53, 198, 205, 370, 489, 527
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	376, 459
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	1 cut(s)	230
HpyF3I	CTNAG	3 cut(s)	60, 369, 404
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	19, 136
Kzo9I	GATC	2 cut(s)	48, 114
LguI	GCTCTTC	1 cut(s)	393
LpnPI	CCDG	7 cut(s)	138, 157, 192, 230, 234, 306, 329
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	50, 116
MboI	GATC	2 cut(s)	48, 114
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	37, 287
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	66, 467
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	48, 114
NlaIII	CATG	2 cut(s)	19, 136
NmuCI	GTSAC	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	73, 446
PkrI	GCNGC	2 cut(s)	232, 235
PspPI	GGNCC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	231, 234
Sau3AI	GATC	2 cut(s)	48, 114
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	2 cut(s)	405, 442
SfaNI	GCATC	1 cut(s)	217
Sse9I	AATT	2 cut(s)	37, 287
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	258, 444
TasI	AATT	2 cut(s)	37, 287
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	73, 446
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	228, 283
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	148
TspRI	CASTG	2 cut(s)	228, 283
XapI	RAATTY	1 cut(s)	37
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.